# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00001.fasta.huge -Q ../query/FLJ00001.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00001, 155 aa vs ./tmplib.10216 library 2210839 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3789+/-0.00506; mu= 11.9614+/- 0.342 mean_var=148.3985+/-32.207, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.105283 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1138 ( 1239 res) hj05928 (1239) 116 28.4 1.4 KIAA1753 ( 818 res) pj02614 ( 818) 113 27.7 1.5 KIAA1608 ( 872 res) fj20142 ( 872) 108 26.9 2.6 FLJ00224 ( 896 res) sj06244 ( 896) 108 26.9 2.6 KIAA0213 ( 1626 res) ha04841s1 (1626) 111 27.8 2.7 KIAA0616 ( 634 res) hg03623 ( 634) 100 25.5 5 KIAA0157 ( 419 res) ha03221 ( 419) 97 24.8 5.5 FLJ00037 ( 145 res) as00037 ( 145) 91 23.2 5.6 KIAA1848 ( 445 res) bm03548 ( 445) 96 24.7 6.3 KIAA0346 ( 1682 res) hg01508s1 (1682) 103 26.6 6.4 KIAA1545 ( 968 res) fj14026s1 ( 968) 100 25.8 6.4 KIAA1133 ( 891 res) hg03758b ( 891) 96 25.1 9.3 KIAA0665 ( 760 res) hk02064 ( 760) 94 24.7 10 FLJ00139 ( 585 res) sh03241 ( 585) 91 24.1 12 KIAA0599 ( 697 res) hj03137 ( 697) 91 24.2 14 FLJ00212 ( 407 res) sj05073 ( 407) 88 23.4 14 KIAA2009 ( 501 res) fj05611 ( 501) 88 23.5 16 KIAA1471 ( 1421 res) fj02383s1 (1421) 93 25.0 17 KIAA1614 ( 1208 res) fj12973 (1208) 92 24.7 17 FLJ00153 ( 497 res) sh06127 ( 497) 86 23.2 19 FLJ00328 ( 238 res) sj02853 ( 238) 82 22.2 19 KIAA0161 ( 326 res) ha02800 ( 326) 83 22.5 21 KIAA1986 ( 334 res) pg00636 ( 334) 83 22.5 21 KIAA2030 ( 1023 res) ef00583 (1023) 89 24.1 21 KIAA1741 ( 1777 res) fh23254 (1777) 91 24.8 23 FLJ00038 ( 199 res) as00038 ( 199) 79 21.6 24 FLJ00267 ( 1110 res) sj04085 (1110) 88 24.0 24 KIAA0338 ( 934 res) hg01242 ( 934) 87 23.8 24 KIAA1828 ( 496 res) ha06249 ( 496) 83 22.8 26 KIAA0355 ( 1082 res) hg01881 (1082) 87 23.9 27 KIAA1139 ( 1124 res) hk00330 (1124) 87 23.9 27 KIAA0269 ( 567 res) ha06751 ( 567) 83 22.9 28 KIAA1188 ( 339 res) hg02860a ( 339) 80 22.1 29 KIAA0561 ( 1308 res) hh01676 (1308) 87 24.0 30 KIAA0812 ( 1364 res) hg01044 (1364) 87 24.0 30 FLJ00201 ( 705 res) sj04110 ( 705) 83 23.0 32 KIAA0140 ( 439 res) ha00520 ( 439) 80 22.3 33 KIAA0371 ( 1203 res) hh00252 (1203) 85 23.6 35 KIAA0612 ( 1810 res) hg00654s1 (1810) 87 24.2 36 KIAA0967 ( 1578 res) hj06404 (1578) 86 24.0 36 KIAA1841 ( 523 res) fj20412(revised) ( 523) 80 22.4 37 KIAA0150 ( 944 res) ha01348 ( 944) 83 23.2 37 KIAA0689 ( 547 res) hk03417 ( 547) 80 22.4 38 KIAA0344 ( 2066 res) hg01568 (2066) 87 24.3 38 KIAA1667 ( 505 res) fg05049 ( 505) 79 22.2 40 FLJ00409 ( 210 res) sj08819 ( 210) 74 20.9 41 KIAA2035 ( 1135 res) ff09201 (1135) 83 23.3 41 FLJ00296 ( 187 res) sh03944 ( 187) 73 20.7 43 KIAA0239 ( 849 res) ha06313 ( 849) 80 22.7 48 FLJ00230 ( 414 res) sj06557 ( 414) 76 21.6 49 >>KIAA1138 ( 1239 res) hj05928 (1239 aa) initn: 74 init1: 51 opt: 116 Z-score: 104.0 bits: 28.4 E(): 1.4 Smith-Waterman score: 116; 30.172% identity (58.621% similar) in 116 aa overlap (34-146:477-583) 10 20 30 40 50 60 FLJ000 VCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADPTKP .: : .::.. : : : : : . : KIAA11 RPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTKAP 450 460 470 480 490 500 70 80 90 100 110 120 FLJ000 LSLFLEDPEGRQLCLGLSRVADPPRPRAARNKFLSAGSHSSPEKTWEEEASGPGVDPALW . ..: ..:.: : :. : :. ... :: .. . :. :.::.:::: :..: KIAA11 SGKLVER-KARSLDEGASQ--DAPK---LKKRALSHADLFGDES--EDEAAGPGV-PSVW 510 520 530 540 550 130 140 150 FLJ000 TSH--GLVTQSPG-SRGAAPLPPVEGLLLSGEEDG : .: ..: . : .. .: ..: KIAA11 PSALPSLSSDSDSDSDSSLGFPEAQGPPKRLKASPPPSPAPSSSSSSSSSTSSAGADVDY 560 570 580 590 600 610 >>KIAA1753 ( 818 res) pj02614 (818 aa) initn: 109 init1: 61 opt: 113 Z-score: 103.3 bits: 27.7 E(): 1.5 Smith-Waterman score: 113; 33.696% identity (58.696% similar) in 92 aa overlap (42-127:567-651) 20 30 40 50 60 FLJ000 LTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADPTKPLSL---FL ::. ::: : : :.:. :.:: :: KIAA17 VAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFL 540 550 560 570 580 590 70 80 90 100 110 120 FLJ000 EDPEGRQLCLGLSRVADPPRPRAARNKFLSAGSHSSPEKTWEEEASG---PGVDPALWTS ..:.:. ::. . .: . :. .. .: . ::. ::: ::..::. .. KIAA17 QQPQGH-----LSQSENTFLGTSASHGSLGLNGMNS--SIWEHFASGSFSPGTSPAFLSG 600 610 620 630 640 130 140 150 FLJ000 HGLVTQSPGSRGAAPLPPVEGLLLSGEEDG : KIAA17 PGAAELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELARE 650 660 670 680 690 700 >>KIAA1608 ( 872 res) fj20142 (872 aa) initn: 96 init1: 44 opt: 108 Z-score: 98.9 bits: 26.9 E(): 2.6 Smith-Waterman score: 110; 26.573% identity (51.049% similar) in 143 aa overlap (18-146:499-636) 10 20 30 40 FLJ000 LICVCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTG ..: : . .. . :.. : .: . : KIAA16 PGTFDYQRLDLGGSERSRGVTVALKLTHPYNKLWSLGQDDMAIPSKPPAASPEKPSALLG 470 480 490 500 510 520 50 60 70 80 90 FLJ000 -SLR---------SLLSPTRAD--PTKPL-SLFLEDPEGRQL-CLGLSRVADPPRPRAAR :: :.:.:. . :: : :. . :.::. ::. : :: :: :. KIAA16 NSLALPRRPQNRDSILNPSDKEEVPTPTLGSITIPRPQGRKTPELGI--VPPPPIPRPAK 530 540 550 560 570 580 100 110 120 130 140 150 FLJ000 NKFLSAGSHSSPEKTWEEEASGPGVDPALWTSHGLVTQSPGSRGAAPLPPVEGLLLSGEE . .:. . :. .. ...:.: :.: :.: .. :: : : KIAA16 LQAAGAALGDVSERLQTDRDRRAALSPGLLP--GVVPQGP-TELLQPLSPGPGAAGTSSD 590 600 610 620 630 640 FLJ000 DG KIAA16 ALLALLDPLSTAWSGSTLPSRPATPNVATPFTPQFSFPPAGTPTPFPQPPLNPFVPSMPA 650 660 670 680 690 700 >>FLJ00224 ( 896 res) sj06244 (896 aa) initn: 96 init1: 44 opt: 108 Z-score: 98.8 bits: 26.9 E(): 2.6 Smith-Waterman score: 110; 26.573% identity (51.049% similar) in 143 aa overlap (18-146:523-660) 10 20 30 40 FLJ000 LICVCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTG ..: : . .. . :.. : .: . : FLJ002 PGTFDYQRLDLGGSERSRGVTVALKLTHPYNKLWSLGQDDMAIPSKPPAASPEKPSALLG 500 510 520 530 540 550 50 60 70 80 90 FLJ000 -SLR---------SLLSPTRAD--PTKPL-SLFLEDPEGRQL-CLGLSRVADPPRPRAAR :: :.:.:. . :: : :. . :.::. ::. : :: :: :. FLJ002 NSLALPRRPQNRDSILNPSDKEEVPTPTLGSITIPRPQGRKTPELGI--VPPPPIPRPAK 560 570 580 590 600 610 100 110 120 130 140 150 FLJ000 NKFLSAGSHSSPEKTWEEEASGPGVDPALWTSHGLVTQSPGSRGAAPLPPVEGLLLSGEE . .:. . :. .. ...:.: :.: :.: .. :: : : FLJ002 LQAAGAALGDVSERLQTDRDRRAALSPGLLP--GVVPQGP-TELLQPLSPGPGAAGTSSD 620 630 640 650 660 FLJ000 DG FLJ002 ALLALLDPLSTAWSGSTLPSRPATPNVATPFTPQFSFPPAGTPTPFPQPPLNPFVPSMPA 670 680 690 700 710 720 >>KIAA0213 ( 1626 res) ha04841s1 (1626 aa) initn: 53 init1: 53 opt: 111 Z-score: 98.7 bits: 27.8 E(): 2.7 Smith-Waterman score: 111; 29.932% identity (49.660% similar) in 147 aa overlap (17-147:1181-1315) 10 20 30 40 FLJ000 LICVCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTP- :: :: . : .. . : :.: .: KIAA02 SGRGTRPRWATQGFDFLQAIEPAFISALPEDDFLSLQALMNECI-----GHVIGKPHSPV 1160 1170 1180 1190 1200 50 60 70 80 90 FLJ000 TG--------SLRSLLSPT-RADPTKPLSLFLEDPEGRQLCLGLSRVADPPR--PRAARN :: : : . : ..:: .: :.. ::: . : : : . : ::. KIAA02 TGLYLAIHRNSPRPMKVPRCHSDPPNP-HLIIPTPEGFR---G-SSVPENDRLASIAAEL 1210 1220 1230 1240 1250 1260 100 110 120 130 140 150 FLJ000 KFLSAGSHSSPEKTWEEEA----SGPGVDPALWTSHGLVTQSPGSRGAAPLPPVEGLLLS .: : . :::: . .: : .. : : . :..:: . :. : :.:.. KIAA02 QFRSLSRHSSPTEERDEPAYPRGDSSGSTRRSWELRTLISQSKDT--ASKLGPIEAIQKS 1270 1280 1290 1300 1310 FLJ000 GEEDG KIAA02 VRLFEEKRYREMRRKNIIGQVCDTPKSYDNVMHVGLRKVTFKWQRGNKIGEGQYGKVYTC 1320 1330 1340 1350 1360 1370 >>KIAA0616 ( 634 res) hg03623 (634 aa) initn: 63 init1: 63 opt: 100 Z-score: 93.8 bits: 25.5 E(): 5 Smith-Waterman score: 100; 30.851% identity (54.255% similar) in 94 aa overlap (39-129:394-483) 10 20 30 40 50 60 FLJ000 QRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADPTKPLSLFL :: :. :..:: .: : : :: KIAA06 PPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVTVPSSLPQ 370 380 390 400 410 420 70 80 90 100 110 120 FLJ000 EDPEGR-QLCLGLSRVADPPRPRAARNKFLSAGS--HSSPEKTWEEEASGPGVDPALWTS ::. : .:.. .:. : . :. :::: ..:: . ... .:: .: .. KIAA06 SPPENPGQPSMGID-IASAPALQQYRT---SAGSPANQSPTSPVSNQGFSPGSSPQHTST 430 440 450 460 470 130 140 150 FLJ000 HGLVTQSPGSRGAAPLPPVEGLLLSGEEDG : : KIAA06 LGSVFGDAYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLTG 480 490 500 510 520 530 >>KIAA0157 ( 419 res) ha03221 (419 aa) initn: 68 init1: 46 opt: 97 Z-score: 93.1 bits: 24.8 E(): 5.5 Smith-Waterman score: 97; 33.654% identity (55.769% similar) in 104 aa overlap (53-153:279-375) 30 40 50 60 70 80 FLJ000 KNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADPTKPLSLFLEDPEGRQLCLGLSR :.:. . : : : : :::. :: .. KIAA01 RRQITQRKNEKEQERRLQQAVLSRQMPSESLDPAFS-PRMPSSGFA--AEGRST-LGDAE 250 260 270 280 290 300 90 100 110 120 130 FLJ000 VADPPRPRAAR--NKFLSAGSHSSPEKT-WEEEASGPGVDPALWTSHGLVTQSPGSRGAA ..::: : . :. :. ::: :.. . . .. : . :: :: . ::: . KIAA01 ASDPPPPYSDFHPNNQESTLSHSRMERSVFMPRPQAVGSSNYASTSAGL--KYPGSGADL 310 320 330 340 350 360 140 150 FLJ000 PLPPVEGLLLSGEEDG : :: .. :::. KIAA01 P-PPQRAAGDSGEDSDDSDYENLIDPTEPSNSEYSHSKDSRPMAHPDEDPRNTQTSQI 370 380 390 400 410 >>FLJ00037 ( 145 res) as00037 (145 aa) initn: 37 init1: 37 opt: 91 Z-score: 92.9 bits: 23.2 E(): 5.6 Smith-Waterman score: 91; 36.667% identity (55.000% similar) in 60 aa overlap (39-91:6-65) 10 20 30 40 50 60 FLJ000 QRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPV--TPTGSLRSLLSPTRADP-TKPLS ::::. . :: : .:. :.: ..: FLJ000 GCPRDPGRPAGWSVGGSRPSCAGPSAANPHSRPSL 10 20 30 70 80 90 100 110 120 FLJ000 LFLEDPEGRQLCLG---LSRV-ADPPRPRAARNKFLSAGSHSSPEKTWEEEASGPGVDPA : . .: : : .: : : ::.: : FLJ000 PFPSATNPKQTCCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMA 40 50 60 70 80 90 >>KIAA1848 ( 445 res) bm03548 (445 aa) initn: 60 init1: 38 opt: 96 Z-score: 92.1 bits: 24.7 E(): 6.3 Smith-Waterman score: 96; 28.333% identity (47.500% similar) in 120 aa overlap (35-147:332-444) 10 20 30 40 50 60 FLJ000 CCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPG--RPVTPTGSLRSLLSPTRADPTK ::. : .:..: : : . . . :. KIAA18 VKSQTTYYAQCYRHMLDLQKQLGSSQGAIFPGTFVGTTEPASPPLSSTSPTTAAATMPVV 310 320 330 340 350 360 70 80 90 100 110 FLJ000 PLSLFLEDPEGRQLCLGLSRVADPPR-PRAARNKFLSAGSHSSPEKTWEEEA----SGPG : : : .:: : .:: : : :: . .. :: .: : :: KIAA18 PSVASLAPPGEASLC--LEEVAPPASGTRKARVLYDYEAADSSELALLADELITVYSLPG 370 380 390 400 410 120 130 140 150 FLJ000 VDPALWTSHGLVTQSPGSRGAAPLPPVEGLLLSGEEDG .:: : :. . ...: .:. .: : KIAA18 MDPD-W----LIGERGNKKGKVPVTYLELLS 420 430 440 >>KIAA0346 ( 1682 res) hg01508s1 (1682 aa) initn: 87 init1: 55 opt: 103 Z-score: 91.9 bits: 26.6 E(): 6.4 Smith-Waterman score: 103; 35.294% identity (48.529% similar) in 68 aa overlap (80-146:4-68) 50 60 70 80 90 100 FLJ000 RSLLSPTRADPTKPLSLFLEDPEGRQLCLGLSRVADPPRPRAARNKFLSAGSHSSPEKTW . :..::: ::::. : .: : .: KIAA03 PGWMHRAVDPPGARAAREAFALGGL--SCAGAW 10 20 30 110 120 130 140 150 FLJ000 EEEASGPGVDPALWTSHGLVTQSPGSRG-AAPLPPVEGLLLSGEEDG : : : : . : :. ::::: .: KIAA03 SSCPPHPPPRSA-WLPGGRCSASIGQPPLPAPLPPSHGSSSGHPSKPYYAPGAPTPRPLH 40 50 60 70 80 90 KIAA03 GKLESLHGCVQALLREPAQPGLWEQLGQLYESEHDSEEATRCYHSALRYGGSFAELGPRI 100 110 120 130 140 150 155 residues in 1 query sequences 2210839 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:25:45 2009 done: Fri Feb 27 10:25:45 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]