# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00001.fasta.nr -Q ../query/FLJ00001.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00001, 155 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826319 sequences Expectation_n fit: rho(ln(x))= 5.2692+/-0.000188; mu= 7.1699+/- 0.010 mean_var=80.5058+/-15.418, 0's: 44 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.142942 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|7209303|dbj|BAA92226.1| FLJ00001 protein [Homo ( 155) 1083 231.8 3.2e-59 >>gi|7209303|dbj|BAA92226.1| FLJ00001 protein [Homo sapi (155 aa) initn: 1083 init1: 1083 opt: 1083 Z-score: 1219.4 bits: 231.8 E(): 3.2e-59 Smith-Waterman score: 1083; 100.000% identity (100.000% similar) in 155 aa overlap (1-155:1-155) 10 20 30 40 50 60 FLJ000 LICVCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 LICVCCSDQRLLTCLCDDQLSSKNLTHHGVTLRAPGSCPGRPVTPTGSLRSLLSPTRADP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 TKPLSLFLEDPEGRQLCLGLSRVADPPRPRAARNKFLSAGSHSSPEKTWEEEASGPGVDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|720 TKPLSLFLEDPEGRQLCLGLSRVADPPRPRAARNKFLSAGSHSSPEKTWEEEASGPGVDP 70 80 90 100 110 120 130 140 150 FLJ000 ALWTSHGLVTQSPGSRGAAPLPPVEGLLLSGEEDG ::::::::::::::::::::::::::::::::::: gi|720 ALWTSHGLVTQSPGSRGAAPLPPVEGLLLSGEEDG 130 140 150 155 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:27:42 2009 done: Fri Feb 27 10:32:04 2009 Total Scan time: 601.740 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]