# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00028.fasta.huge -Q ../query/FLJ00028.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00028, 91 aa vs ./tmplib.10216 library 2210903 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.8210+/-0.00477; mu= 12.8884+/- 0.323 mean_var=127.1937+/-28.228, 0's: 0 Z-trim: 0 B-trim: 59 in 1/39 Lambda= 0.113721 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0181 ( 2079 res) ha02522s1 (2079) 107 27.8 2 KIAA0561 ( 1308 res) hh01676 (1308) 102 26.6 2.8 KIAA2031 ( 515 res) ef03841 ( 515) 96 25.0 3.3 KIAA0787 ( 557 res) hk05521s1 ( 557) 93 24.6 4.9 KIAA1388 ( 599 res) fj06552 ( 599) 91 24.3 6.4 KIAA1324 ( 580 res) fh14139 ( 580) 88 23.8 8.8 KIAA0945 ( 797 res) hj04760 ( 797) 89 24.2 9.4 KIAA1498 ( 1731 res) hh01611 (1731) 92 25.2 10 KIAA1869 ( 935 res) hh01800 ( 935) 89 24.3 10 KIAA0628 ( 540 res) hh01433 ( 540) 86 23.4 11 KIAA0940 ( 699 res) hh04894 ( 699) 87 23.8 11 FLJ00278 ( 176 res) sh01653 ( 176) 80 21.7 11 FLJ00386 ( 811 res) sj04204 ( 811) 85 23.5 15 KIAA0572 ( 1872 res) hh02391 (1872) 89 24.7 15 KIAA2020 ( 572 res) ph01249 ( 572) 83 23.0 15 KIAA1866 ( 1783 res) pf09734 (1783) 88 24.5 16 KIAA0306 ( 1451 res) hg00063 (1451) 87 24.2 16 KIAA1326 ( 424 res) fh14376 ( 424) 81 22.5 16 KIAA1549 ( 1865 res) fh16155s1 (1865) 88 24.6 17 FLJ00049 ( 133 res) as00049 ( 133) 75 20.7 17 KIAA2036 ( 1322 res) pf06513 (1322) 86 24.0 17 FLJ00232 ( 318 res) sj06640 ( 318) 77 21.6 22 KIAA0616 ( 634 res) hg03623 ( 634) 80 22.6 23 KIAA1231 ( 1061 res) fh08195s1 (1061) 82 23.2 24 KIAA0390 ( 1312 res) hj00075 (1312) 83 23.5 24 KIAA0820 ( 892 res) bg00036 ( 892) 81 22.9 25 KIAA0927 ( 1001 res) hg03734 (1001) 81 23.0 26 KIAA1085 ( 584 res) hj07690 ( 584) 78 22.2 27 KIAA0183 ( 1111 res) ha02726 (1111) 81 23.1 28 KIAA0300 ( 2847 res) hf00389s1 (2847) 85 24.4 29 KIAA0458 ( 1552 res) ef01252 (1552) 82 23.5 30 KIAA0261 ( 1287 res) ha07054 (1287) 81 23.2 30 KIAA0086 ( 1044 res) ha03611 (1044) 79 22.7 34 FLJ00069 ( 579 res) as00069 ( 579) 76 21.8 34 KIAA0765 ( 952 res) hk04803s1 ( 952) 78 22.5 36 KIAA0711 ( 661 res) hg00358 ( 661) 76 21.9 37 KIAA1813 ( 673 res) ph00819b ( 673) 76 21.9 37 KIAA1874 ( 579 res) hk07257s1 ( 579) 75 21.7 38 KIAA0920 ( 1134 res) hh02592 (1134) 78 22.6 39 KIAA1084 ( 778 res) hj07515 ( 778) 76 22.0 40 KIAA1343 ( 520 res) fj00420 ( 520) 74 21.4 40 KIAA1817 ( 997 res) fj14474 ( 997) 77 22.4 41 KIAA0973 ( 1583 res) hj06871 (1583) 79 23.0 42 FLJ00268 ( 695 res) sj05723 ( 695) 75 21.8 42 FLJ00359 ( 1056 res) sh03991 (1056) 77 22.4 42 KIAA0298 ( 901 res) hf00341(revised) ( 901) 76 22.1 44 KIAA0612 ( 1810 res) hg00654s1 (1810) 79 23.1 45 FLJ00227 ( 196 res) sj06355 ( 196) 68 19.8 47 KIAA0512 ( 710 res) hf00239 ( 710) 74 21.6 48 KIAA0731 ( 1096 res) hk03714 (1096) 76 22.3 48 >>KIAA0181 ( 2079 res) ha02522s1 (2079 aa) initn: 95 init1: 65 opt: 107 Z-score: 100.8 bits: 27.8 E(): 2 Smith-Waterman score: 107; 28.125% identity (50.000% similar) in 96 aa overlap (1-88:1167-1259) 10 20 FLJ000 PAGTILPA---LLSHPDPEGCP---DQRAP :. ..:: ... : : : : : KIAA01 PSSSPLAEMASLPEASGSEAPSVPGGPNNMPSHVVLPQNQLMMTGPKPGPSPLSATQGAT 1140 1150 1160 1170 1180 1190 30 40 50 60 70 80 FLJ000 SSQPHSAALTS--GHHPPSLTRPAELCRPQSAENLKCCDFALLQGPAMECPLCEHFESYA .:: .: : ::: :... :.. ::.. . . . : : . : : : KIAA01 PQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPY-YPQTPNNRPPSTE--PSEI 1200 1210 1220 1230 1240 1250 90 FLJ000 SIHPRRSHP :. :.: KIAA01 SLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTMNPSNF 1260 1270 1280 1290 1300 1310 >>KIAA0561 ( 1308 res) hh01676 (1308 aa) initn: 111 init1: 62 opt: 102 Z-score: 98.3 bits: 26.6 E(): 2.8 Smith-Waterman score: 102; 42.222% identity (62.222% similar) in 45 aa overlap (13-57:1185-1226) 10 20 30 40 FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHSAALTSGHHPPSL :.: .:: :: :.: . :: ::. KIAA05 TRPSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPP--PRSPSPLPGH-PPAP 1160 1170 1180 1190 1200 1210 50 60 70 80 90 FLJ000 TRPAELCRPQSAENLKCCDFALLQGPAMECPLCEHFESYASIHPRRSHP .: .: : :::..: KIAA05 ARSPRLRRGQSADKLGTGERLDGEAGRRTRGPEAELVVMRRLHLSERRDSFKKQEAVQEV 1220 1230 1240 1250 1260 1270 >>KIAA2031 ( 515 res) ef03841 (515 aa) initn: 94 init1: 43 opt: 96 Z-score: 97.0 bits: 25.0 E(): 3.3 Smith-Waterman score: 96; 31.959% identity (53.608% similar) in 97 aa overlap (1-86:384-478) 10 20 FLJ000 PAGTILPALLSH---PDPEGCPDQRAPS-- :.: : ::. ::: : . : :. KIAA20 TVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLELPLSRRGAPDPVGALSWRPPQGP 360 370 380 390 400 410 30 40 50 60 70 FLJ000 -SQPHSAALTSGHHPPSLTRPAELCRPQ---SAENLKCCDFALLQGPAM--ECPLCEHFE : : .::.... :: . : : : ..:: . : ..::. :: .: . : KIAA20 VSFPGGAAFSTATSLPS-SPAAAACAPLDSGASENSRKPPSAS-SAPALARECVVCAEGE 420 430 440 450 460 470 80 90 FLJ000 SYASIHPRRSHP .:.. : KIAA20 VMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIFS 480 490 500 510 >>KIAA0787 ( 557 res) hk05521s1 (557 aa) initn: 75 init1: 47 opt: 93 Z-score: 94.0 bits: 24.6 E(): 4.9 Smith-Waterman score: 93; 31.429% identity (57.143% similar) in 70 aa overlap (7-73:213-280) 10 20 30 FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHS--AALT : ..: : :: . :.: : .. : : KIAA07 AYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 SGHHPPSLTRPAELCRPQSAENLKCCDFALL-QGPAMECPLCEHFESYASIHPRRSHP . :: .... .:. . ..: : :. :::.:: : KIAA07 KLDHP-NVVKLVEVLDDPNEDHLYMV-FELVNQGPVMEVPTLKPLSEDQARFYFQDLIKG 250 260 270 280 290 300 KIAA07 IEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESL 310 320 330 340 350 360 >>KIAA1388 ( 599 res) fj06552 (599 aa) initn: 129 init1: 66 opt: 91 Z-score: 91.9 bits: 24.3 E(): 6.4 Smith-Waterman score: 91; 28.571% identity (50.794% similar) in 63 aa overlap (1-59:61-123) 10 20 FLJ000 PAGTILPALLSHPDPEGCPDQRAP---SSQ : : . ..: .::: : :.:: ... KIAA13 QQPQPPQPQHHAEPPPALAEHTLPPGTAENPLGCAVYGILLQPDPGLQPPQHAPLQAAGE 40 50 60 70 80 90 30 40 50 60 70 80 FLJ000 PHSAALTSGHHPPSLTRPAE-LCRPQSAENLKCCDFALLQGPAMECPLCEHFESYASIHP : . :: :. : : : ....: KIAA13 PGPKCGVCGHDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCVQAEQKPFV 100 110 120 130 140 150 90 FLJ000 RRSHP KIAA13 CGVCKMGFSLLTSLAQHHSSHSGLVKCSICEKTYKPAEAAEPATTAAPSLPAAPAPSTVT 160 170 180 190 200 210 >>KIAA1324 ( 580 res) fh14139 (580 aa) initn: 73 init1: 44 opt: 88 Z-score: 89.4 bits: 23.8 E(): 8.8 Smith-Waterman score: 99; 28.916% identity (45.783% similar) in 83 aa overlap (3-75:353-435) 10 20 FLJ000 PAGTILPALLSHPDPEGCPD-----QRAPSSQ : :: : : . : :: . .: KIAA13 EVTGYKAGVSSQPVSLADRLIGVTTDMTLDGITSPAELFHLESLGIPDVIFFYRSNDVTQ 330 340 350 360 370 380 30 40 50 60 70 80 FLJ000 PHSAALTSG---HHPPSLTRPAELCRPQSAENLKC--CDFALLQGPAMECPLCEHFESYA :.. .. . :. : :. : : . . : :.: .: : :::: KIAA13 SCSSGRSTTIRVRCSPQKTVPGSLLLPGTCSDGTCDGCNFHFLWESAAACPLCSVADYHA 390 400 410 420 430 440 90 FLJ000 SIHPRRSHP KIAA13 IVSSCVAGIQKTTYVWREPKLCSGGISLPEQRVTICKTIDFWLKVGISAGTCTAILLTVL 450 460 470 480 490 500 >>KIAA0945 ( 797 res) hj04760 (797 aa) initn: 79 init1: 79 opt: 89 Z-score: 88.9 bits: 24.2 E(): 9.4 Smith-Waterman score: 89; 38.095% identity (59.524% similar) in 42 aa overlap (13-52:291-331) 10 20 30 40 FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHSAALTSGHHPPS- : .::::. ::. : . .. .:.: : KIAA09 KAPRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHKPLSK 270 280 290 300 310 320 50 60 70 80 90 FLJ000 -LTRPAELCRPQSAENLKCCDFALLQGPAMECPLCEHFESYASIHPRRSHP : : : ::. KIAA09 ALESPLGL-RPHLPLLMGGQAALKPEPGRPGEESPAPKQELHQPSFPTPQLSPLPMPGNP 330 340 350 360 370 >>KIAA1498 ( 1731 res) hh01611 (1731 aa) initn: 101 init1: 69 opt: 92 Z-score: 88.3 bits: 25.2 E(): 10 Smith-Waterman score: 92; 41.071% identity (58.929% similar) in 56 aa overlap (2-56:647-697) 10 20 30 FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHSA :.: ::. : : :: . :.:. : KIAA14 SQPAQLALHVPTPGKVQVQASQLSSLPQMVASTRLPV---DPAPP-CP-RPLPTSSTSSL 620 630 640 650 660 670 40 50 60 70 80 90 FLJ000 ALTSGHHP-PSLTRPAELCRPQSAENLKCCDFALLQGPAMECPLCEHFESYASIHPRRSH : .:: : :: .: . . ::.:: : KIAA14 APVSGSGPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATSSQDS 680 690 700 710 720 730 >>KIAA1869 ( 935 res) hh01800 (935 aa) initn: 97 init1: 73 opt: 89 Z-score: 88.2 bits: 24.3 E(): 10 Smith-Waterman score: 89; 32.500% identity (47.500% similar) in 80 aa overlap (2-74:746-823) 10 20 30 FLJ000 PAGTILPALLSHPDPEGCPDQRAP-SSQPHS :: : .: .: : ::: : . .. . KIAA18 HLRAAGDPWEWNQNRNNAKEGPGRSRGGHAAGGPAPRVLVRPPPPGCPGQAVEVTTLEEL 720 730 740 750 760 770 40 50 60 70 80 FLJ000 AALTSGHHPPSLTRPAELCRPQSAENLKCCDF-ALLQGPA---MEC--PLCEHFESYASI : .:: . :: : ... : ::: ::. :: :: KIAA18 LRYLHGPQPPR--KGAEPPAPLTSRALPPEPAPALLGGPSPRPHECASPLRLDVPPEGRC 780 790 800 810 820 830 90 FLJ000 HPRRSHP KIAA18 ASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLLYLGR 840 850 860 870 880 890 >>KIAA0628 ( 540 res) hh01433 (540 aa) initn: 62 init1: 62 opt: 86 Z-score: 87.9 bits: 23.4 E(): 11 Smith-Waterman score: 86; 25.000% identity (50.000% similar) in 84 aa overlap (14-90:66-149) 10 20 30 40 FLJ000 PAGTILPALLSHPDPEGCPDQRAPSSQPHSAALTSGHHPPSLT .::: .::.. .: : . KIAA06 RTTSDRLTVMELPSPESEEVHEPRLGELLGNPEGQSLGSSPSQDRGCKQVTVTHWKIQTG 40 50 60 70 80 90 50 60 70 80 90 FLJ000 RPAELCRPQSAENLKCCDFALLQ-----GPAMECPLCEHFESYAS--IHPRRSHP . :..: .. ... :. ::: : : : .: . .. : .. : :: KIAA06 ETAQVCTKSGRNHILNSDLLLLQRELIEGEANPCDICGKTFTFNSDLVRHRISHAGEKPY 100 110 120 130 140 150 KIAA06 TCDQCGKGFGQSSHLMEHQRIHTGERLYVCNVCGKDFIHYSGLIEHQRVHSGEKPFKCAQ 160 170 180 190 200 210 91 residues in 1 query sequences 2210903 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:28:32 2009 done: Fri Feb 27 10:28:33 2009 Total Scan time: 0.280 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]