# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00035.fasta.nr -Q ../query/FLJ00035.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00035, 187 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7827445 sequences
Expectation_n fit: rho(ln(x))= 4.5276+/-0.000178; mu= 9.8877+/- 0.010
mean_var=57.2844+/-11.205, 0's: 28 Z-trim: 28 B-trim: 54 in 1/64
Lambda= 0.169456
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|10440404|dbj|BAB15735.1| FLJ00035 protein [Homo ( 187) 1256 314.8 4.8e-84
gi|169207429|ref|XP_001716032.1| PREDICTED: simila ( 381) 1256 315.0 8.3e-84
gi|169207061|ref|XP_001718439.1| PREDICTED: simila ( 404) 1256 315.0 8.6e-84
gi|119368573|sp|Q9H7N3.2|CN056_HUMAN RecName: Full ( 144) 964 243.3 1.2e-62
>>gi|10440404|dbj|BAB15735.1| FLJ00035 protein [Homo sap (187 aa)
initn: 1256 init1: 1256 opt: 1256 Z-score: 1665.1 bits: 314.8 E(): 4.8e-84
Smith-Waterman score: 1256; 100.000% identity (100.000% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
FLJ000 QFRIYYTHCYLNTHRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYRAYHVYYITIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 QFRIYYTHCYLNTHRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYRAYHVYYITIRH
10 20 30 40 50 60
70 80 90 100 110 120
FLJ000 KPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 KPKQLAAGLLNIATAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGR
70 80 90 100 110 120
130 140 150 160 170 180
FLJ000 VGKKVARSLVVGIHRLPLKGVLPGWRMLLEEKRERHETGTLQSCHHGNVTQWHRACSSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 VGKKVARSLVVGIHRLPLKGVLPGWRMLLEEKRERHETGTLQSCHHGNVTQWHRACSSLL
130 140 150 160 170 180
FLJ000 FSFLFFF
:::::::
gi|104 FSFLFFF
>>gi|169207429|ref|XP_001716032.1| PREDICTED: similar to (381 aa)
initn: 1256 init1: 1256 opt: 1256 Z-score: 1660.9 bits: 315.0 E(): 8.3e-84
Smith-Waterman score: 1256; 100.000% identity (100.000% similar) in 187 aa overlap (1-187:195-381)
10 20 30
FLJ000 QFRIYYTHCYLNTHRKLLSSPRPLQSISRA
::::::::::::::::::::::::::::::
gi|169 QAWGPQQCHHTMISGAISMSEMEDSQTLSRQFRIYYTHCYLNTHRKLLSSPRPLQSISRA
170 180 190 200 210 220
40 50 60 70 80 90
FLJ000 HIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|169 HIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMST
230 240 250 260 270 280
100 110 120 130 140 150
FLJ000 NFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|169 NFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLE
290 300 310 320 330 340
160 170 180
FLJ000 EKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF
:::::::::::::::::::::::::::::::::::::
gi|169 EKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF
350 360 370 380
>>gi|169207061|ref|XP_001718439.1| PREDICTED: similar to (404 aa)
initn: 1256 init1: 1256 opt: 1256 Z-score: 1660.5 bits: 315.0 E(): 8.6e-84
Smith-Waterman score: 1256; 100.000% identity (100.000% similar) in 187 aa overlap (1-187:158-344)
10 20 30
FLJ000 QFRIYYTHCYLNTHRKLLSSPRPLQSISRA
::::::::::::::::::::::::::::::
gi|169 QAWGPQQCHHTMISGAISMSEMEDSQTLSRQFRIYYTHCYLNTHRKLLSSPRPLQSISRA
130 140 150 160 170 180
40 50 60 70 80 90
FLJ000 HIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|169 HIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQLAAGLLNIATAEIFSGLEEEPLQMST
190 200 210 220 230 240
100 110 120 130 140 150
FLJ000 NFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|169 NFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGIHRLPLKGVLPGWRMLLE
250 260 270 280 290 300
160 170 180
FLJ000 EKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF
:::::::::::::::::::::::::::::::::::::
gi|169 EKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFFLRRNLGGKKFLVETSSTFLCPPQ
310 320 330 340 350 360
gi|169 LGQSPPMCSADALRKSCLFYAVLLGSWGAGVGTSAGR
370 380 390 400
>>gi|119368573|sp|Q9H7N3.2|CN056_HUMAN RecName: Full=Unc (144 aa)
initn: 964 init1: 964 opt: 964 Z-score: 1280.9 bits: 243.3 E(): 1.2e-62
Smith-Waterman score: 964; 100.000% identity (100.000% similar) in 144 aa overlap (44-187:1-144)
20 30 40 50 60 70
FLJ000 HRKLLSSPRPLQSISRAHIIVRPLFSSLQPMFRAYRAYHVYYITIRHKPKQLAAGLLNIA
::::::::::::::::::::::::::::::
gi|119 MFRAYRAYHVYYITIRHKPKQLAAGLLNIA
10 20 30
80 90 100 110 120 130
FLJ000 TAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 TAEIFSGLEEEPLQMSTNFSNFLVYGMKSLKLTALCSTIGLHDARGRVGKKVARSLVVGI
40 50 60 70 80 90
140 150 160 170 180
FLJ000 HRLPLKGVLPGWRMLLEEKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 HRLPLKGVLPGWRMLLEEKRERHETGTLQSCHHGNVTQWHRACSSLLFSFLFFF
100 110 120 130 140
187 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 14:58:46 2009 done: Fri Feb 27 15:03:15 2009
Total Scan time: 641.160 Total Display time: 0.010
Function used was FASTA [version 34.26.5 April 26, 2007]