# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00037.fasta.nr -Q ../query/FLJ00037.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00037, 145 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7821661 sequences Expectation_n fit: rho(ln(x))= 5.4311+/-0.000195; mu= 7.0176+/- 0.011 mean_var=104.7904+/-19.862, 0's: 37 Z-trim: 43 B-trim: 0 in 0/66 Lambda= 0.125289 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440408|dbj|BAB15737.1| FLJ00037 protein [Homo ( 145) 1066 201.7 3.1e-50 gi|37782444|gb|AAP34468.1| LP6054 [Homo sapiens] ( 292) 471 94.5 1.2e-17 gi|47847388|dbj|BAD21366.1| mFLJ00037 protein [Mus ( 136) 431 86.9 1.1e-15 gi|109094620|ref|XP_001111813.1| PREDICTED: simila ( 292) 413 84.0 1.7e-14 gi|26342523|dbj|BAC25112.1| unnamed protein produc ( 320) 407 83.0 3.8e-14 gi|148672435|gb|EDL04382.1| TraB domain containing ( 348) 407 83.0 4.1e-14 gi|151553780|gb|AAI49348.1| TRABD protein [Bos tau ( 342) 390 79.9 3.4e-13 gi|119593903|gb|EAW73497.1| hypothetical protein P ( 263) 387 79.3 4.1e-13 gi|15214638|gb|AAH12445.1| TRABD protein [Homo sap ( 330) 387 79.4 4.8e-13 gi|20141036|sp|Q9H4I3.1|TRABD_HUMAN RecName: Full= ( 376) 387 79.4 5.2e-13 gi|20141021|sp|Q99JY4.1|TRABD_MOUSE RecName: Full= ( 376) 387 79.4 5.2e-13 gi|149017528|gb|EDL76532.1| similar to RIKEN cDNA ( 376) 387 79.4 5.2e-13 gi|109094622|ref|XP_001111774.1| PREDICTED: simila ( 320) 386 79.2 5.3e-13 gi|119593904|gb|EAW73498.1| hypothetical protein P ( 392) 387 79.4 5.4e-13 gi|148672434|gb|EDL04381.1| TraB domain containing ( 422) 387 79.5 5.7e-13 gi|109094612|ref|XP_001111850.1| PREDICTED: hypoth ( 375) 386 79.2 5.9e-13 gi|114687042|ref|XP_515215.2| PREDICTED: hypotheti ( 451) 387 79.5 5.9e-13 gi|75057695|sp|Q58DF3|TRABD_BOVIN TraB domain-cont ( 377) 386 79.3 6e-13 gi|109094610|ref|XP_001111734.1| PREDICTED: hypoth ( 378) 386 79.3 6e-13 gi|194226998|ref|XP_001914911.1| PREDICTED: simila ( 377) 383 78.7 8.7e-13 gi|73968857|ref|XP_848728.1| PREDICTED: similar to ( 723) 383 79.0 1.4e-12 gi|12857145|dbj|BAB30908.1| unnamed protein produc ( 422) 379 78.0 1.5e-12 gi|126338973|ref|XP_001363509.1| PREDICTED: hypoth ( 409) 372 76.8 3.6e-12 gi|149473424|ref|XP_001520057.1| PREDICTED: hypoth ( 641) 371 76.8 5.6e-12 gi|60098601|emb|CAH65131.1| hypothetical protein [ ( 374) 361 74.7 1.4e-11 gi|170284886|gb|AAI61290.1| LOC100145566 protein [ ( 367) 359 74.4 1.7e-11 gi|58701921|gb|AAH90189.1| MGC84987 protein [Xenop ( 373) 359 74.4 1.7e-11 gi|118107171|ref|XP_001236183.1| PREDICTED: hypoth ( 216) 352 72.8 2.9e-11 gi|33416437|gb|AAH55655.1| TraB domain containing ( 360) 282 60.4 2.6e-07 gi|47225784|emb|CAF98264.1| unnamed protein produc ( 327) 275 59.1 5.9e-07 gi|210128990|gb|EEA76666.1| hypothetical protein B ( 301) 217 48.6 0.0008 gi|215507443|gb|EEC16935.1| TraB domain-containing ( 474) 213 48.1 0.0018 gi|108875368|gb|EAT39593.1| TraB, putative [Aedes ( 513) 200 45.8 0.0097 >>gi|10440408|dbj|BAB15737.1| FLJ00037 protein [Homo sap (145 aa) initn: 1066 init1: 1066 opt: 1066 Z-score: 1058.1 bits: 201.7 E(): 3.1e-50 Smith-Waterman score: 1066; 100.000% identity (100.000% similar) in 145 aa overlap (1-145:1-145) 10 20 30 40 50 60 FLJ000 GCPRDPGRPAGWSVGGSRPSCAGPSAANPHSRPSLPFPSATNPKQTCCGPCPVSTVPAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 GCPRDPGRPAGWSVGGSRPSCAGPSAANPHSRPSLPFPSATNPKQTCCGPCPVSTVPAPP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 PQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYML 70 80 90 100 110 120 130 140 FLJ000 RQAARRLELPRASDGDGRPQAWDPL ::::::::::::::::::::::::: gi|104 RQAARRLELPRASDGDGRPQAWDPL 130 140 >>gi|37782444|gb|AAP34468.1| LP6054 [Homo sapiens] g (292 aa) initn: 471 init1: 471 opt: 471 Z-score: 473.1 bits: 94.5 E(): 1.2e-17 Smith-Waterman score: 471; 100.000% identity (100.000% similar) in 69 aa overlap (77-145:224-292) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|377 PVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 200 210 220 230 240 250 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL ::::::::::::::::::::::::::::::::::::::: gi|377 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL 260 270 280 290 >>gi|47847388|dbj|BAD21366.1| mFLJ00037 protein [Mus mus (136 aa) initn: 432 init1: 387 opt: 431 Z-score: 438.1 bits: 86.9 E(): 1.1e-15 Smith-Waterman score: 431; 70.000% identity (77.000% similar) in 100 aa overlap (47-138:3-102) 20 30 40 50 60 FLJ000 SRPSCAGPSAANPHSRPSLPFPSATNPKQTCCGPCPVST-------VPAPPPQPVAHPCG :::: : :: .: . .:: gi|478 TKCCGPFPESTTQTSHVSIPMVCLRAPVHPTH 10 20 30 70 80 90 100 110 120 FLJ000 AAAIPLH-SKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLE . .: :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|478 TCCMPSALSKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLE 40 50 60 70 80 90 130 140 FLJ000 LPRASDGDGRPQAWDPL ::::::.. : gi|478 LPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMT 100 110 120 130 >>gi|109094620|ref|XP_001111813.1| PREDICTED: similar to (292 aa) initn: 413 init1: 413 opt: 413 Z-score: 416.5 bits: 84.0 E(): 1.7e-14 Smith-Waterman score: 413; 95.385% identity (96.923% similar) in 65 aa overlap (77-141:224-288) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|109 PVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 200 210 220 230 240 250 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL :::::::.::::::::::::::::::::::: : : gi|109 TIVSERDIYLTYMLRQAARRLELPRASDGDGCPWARGRP 260 270 280 290 >>gi|26342523|dbj|BAC25112.1| unnamed protein product [M (320 aa) initn: 407 init1: 407 opt: 407 Z-score: 410.1 bits: 83.0 E(): 3.8e-14 Smith-Waterman score: 407; 98.387% identity (100.000% similar) in 62 aa overlap (77-138:223-284) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|263 PVTFIEGIAALSFWQKVKLAWGLCSLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 200 210 220 230 240 250 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL :::::::::::::::::::::::::::::::. gi|263 TIVSERDVYLTYMLRQAARRLELPRASDGDGKLSPGSVSRLWLWASLAWGMCLALRRTGV 260 270 280 290 300 310 gi|263 PTSTSRRS 320 >>gi|148672435|gb|EDL04382.1| TraB domain containing, is (348 aa) initn: 407 init1: 407 opt: 407 Z-score: 409.7 bits: 83.0 E(): 4.1e-14 Smith-Waterman score: 407; 98.387% identity (100.000% similar) in 62 aa overlap (77-138:251-312) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|148 PVTFKRAIAALSFWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 230 240 250 260 270 280 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL :::::::::::::::::::::::::::::::. gi|148 TIVSERDVYLTYMLRQAARRLELPRASDGDGKLSPGSVSRLWLWASLAWGMCLALRRTGV 290 300 310 320 330 340 gi|148 PTSTSRRS >>gi|151553780|gb|AAI49348.1| TRABD protein [Bos taurus] (342 aa) initn: 389 init1: 389 opt: 390 Z-score: 393.2 bits: 79.9 E(): 3.4e-13 Smith-Waterman score: 390; 86.765% identity (92.647% similar) in 68 aa overlap (77-144:224-291) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::.:::::::: gi|151 PVTFKRAIAALSLWQKVKLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDLHR 200 210 220 230 240 250 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL :::::::::::::::::::::::::::::. .. : gi|151 TIVSERDVYLTYMLRQAARRLELPRASDGEHGARGHGPRGVGGAQVLMRLPPQPSPGSAS 260 270 280 290 300 310 gi|151 PPWWWASWAWATSLALRRTGPLTSTSRRS 320 330 340 >>gi|119593903|gb|EAW73497.1| hypothetical protein PP244 (263 aa) initn: 387 init1: 387 opt: 387 Z-score: 391.6 bits: 79.3 E(): 4.1e-13 Smith-Waterman score: 387; 95.161% identity (98.387% similar) in 62 aa overlap (77-138:111-172) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|119 PVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 90 100 110 120 130 140 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL ::::::::::::::::::::::::::::.. : gi|119 TIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLN 150 160 170 180 190 200 gi|119 IQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYCLQRVTEA 210 220 230 240 250 260 >>gi|15214638|gb|AAH12445.1| TRABD protein [Homo sapiens (330 aa) initn: 424 init1: 387 opt: 387 Z-score: 390.4 bits: 79.4 E(): 4.8e-13 Smith-Waterman score: 387; 95.161% identity (98.387% similar) in 62 aa overlap (77-138:178-239) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|152 PVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 150 160 170 180 190 200 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL ::::::::::::::::::::::::::::.. : gi|152 TIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLN 210 220 230 240 250 260 gi|152 IQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYCLQRVTEA 270 280 290 300 310 320 >>gi|20141036|sp|Q9H4I3.1|TRABD_HUMAN RecName: Full=TraB (376 aa) initn: 387 init1: 387 opt: 387 Z-score: 389.7 bits: 79.4 E(): 5.2e-13 Smith-Waterman score: 387; 95.161% identity (98.387% similar) in 62 aa overlap (77-138:224-285) 50 60 70 80 90 100 FLJ000 CCGPCPVSTVPAPPPQPVAHPCGAAAIPLHSKDDVERCKQKDLLEQMMAEMIGEFPDLHR :::::::::::::::::::::::::::::: gi|201 PVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHR 200 210 220 230 240 250 110 120 130 140 FLJ000 TIVSERDVYLTYMLRQAARRLELPRASDGDGRPQAWDPL ::::::::::::::::::::::::::::.. : gi|201 TIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLN 260 270 280 290 300 310 gi|201 IQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSLPAAQYCLQRVTEA 320 330 340 350 360 370 145 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 15:12:37 2009 done: Fri Feb 27 15:16:40 2009 Total Scan time: 581.510 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]