# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00038.fasta.nr -Q ../query/FLJ00038.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00038, 199 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7825055 sequences
  Expectation_n fit: rho(ln(x))= 5.4048+/-0.00019; mu= 8.0420+/- 0.011
 mean_var=91.8547+/-17.719, 0's: 41 Z-trim: 42  B-trim: 0 in 0/67
 Lambda= 0.133821

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|10440410|dbj|BAB15738.1| FLJ00038 protein [Homo ( 199) 1421 283.4 1.5e-74
gi|169204488|ref|XP_001714955.1| PREDICTED: simila ( 119)  366 79.5 2.2e-13


>>gi|10440410|dbj|BAB15738.1| FLJ00038 protein [Homo sap  (199 aa)
 initn: 1421 init1: 1421 opt: 1421  Z-score: 1494.4  bits: 283.4 E(): 1.5e-74
Smith-Waterman score: 1421;  100.000% identity (100.000% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
FLJ000 GRAARRHHDSCEDAALPGRSDLCRAPHPARPAARGGRPADGGCPAVPAEGLWRHLQQVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 GRAARRHHDSCEDAALPGRSDLCRAPHPARPAARGGRPADGGCPAVPAEGLWRHLQQVGA
               10        20        30        40        50        60

               70        80        90       100       110       120
FLJ000 ATHPHLMRGPSLSWAIPATHPLGAAPLGNPGPGEPIWLPCVGGAEVRAQLGSFYSWESES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 ATHPHLMRGPSLSWAIPATHPLGAAPLGNPGPGEPIWLPCVGGAEVRAQLGSFYSWESES
               70        80        90       100       110       120

              130       140       150       160       170       180
FLJ000 SLPSTPLSLLVSCGGSALTTHAFPPIGGPIPSRFPAANKYLPSSARVQGSVGISIYPATD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 SLPSTPLSLLVSCGGSALTTHAFPPIGGPIPSRFPAANKYLPSSARVQGSVGISIYPATD
              130       140       150       160       170       180

              190         
FLJ000 KATYLSTWSAHSGRRERPK
       :::::::::::::::::::
gi|104 KATYLSTWSAHSGRRERPK
              190         

>>gi|169204488|ref|XP_001714955.1| PREDICTED: similar to  (119 aa)
 initn: 366 init1: 366 opt: 366  Z-score: 396.5  bits: 79.5 E(): 2.2e-13
Smith-Waterman score: 366;  94.915% identity (100.000% similar) in 59 aa overlap (128-186:50-108)

       100       110       120       130       140       150       
FLJ000 LPCVGGAEVRAQLGSFYSWESESSLPSTPLSLLVSCGGSALTTHAFPPIGGPIPSRFPAA
                                     :::::::::::::.:::::::::::.::::
gi|169 IQPDLRREEAVQQMADALQYLQKVSGDIFSSLLVSCGGSALTTRAFPPIGGPIPSHFPAA
      20        30        40        50        60        70         

       160       170       180       190         
FLJ000 NKYLPSSARVQGSVGISIYPATDKATYLSTWSAHSGRRERPK
       .::::::::::::::::::::::::::::             
gi|169 SKYLPSSARVQGSVGISIYPATDKATYLSMERTFWQERKT  
      80        90       100       110           




199 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 15:16:49 2009 done: Fri Feb 27 15:21:32 2009
 Total Scan time: 670.960 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]