# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00047.fasta.huge -Q ../query/FLJ00047.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00047, 81 aa vs ./tmplib.10216 library 2210913 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 2.8292+/-0.00319; mu= 17.9161+/- 0.217 mean_var=56.5681+/-11.963, 0's: 0 Z-trim: 4 B-trim: 5 in 1/39 Lambda= 0.170525 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0500 ( 213 res) hg00404 ( 213) 152 44.2 2.2e-06 KIAA0364 ( 1437 res) hh00116 (1437) 132 40.7 0.00016 FLJ00199 ( 383 res) sj03574 ( 383) 109 34.0 0.0044 KIAA1657 ( 127 res) hg00527 ( 127) 103 31.7 0.0071 KIAA0758 ( 1370 res) hh15259 (1370) 83 28.6 0.68 KIAA0566 ( 1163 res) hh01910 (1163) 81 28.0 0.88 KIAA0484 ( 97 res) hg00836 ( 97) 72 23.9 1.2 KIAA1670 ( 598 res) hh04251 ( 598) 77 26.5 1.3 KIAA1651 ( 91 res) fj00563 ( 91) 70 23.4 1.7 KIAA0817 ( 2785 res) hg01392s2 (2785) 77 27.6 2.7 FLJ00368 ( 299 res) sh06338 ( 299) 67 23.5 5 KIAA1939 ( 1082 res) ah01164 (1082) 70 25.2 5.6 KIAA1476 ( 2142 res) fj04778s1 (2142) 71 26.0 6.5 KIAA1748 ( 758 res) pj02084 ( 758) 68 24.4 6.6 KIAA1433 ( 652 res) hh05535 ( 652) 67 24.1 7.3 FLJ00145 ( 1731 res) sh04908 (1731) 69 25.3 8.3 KIAA0946 ( 667 res) hj04787 ( 667) 66 23.9 8.7 KIAA0245 ( 552 res) ha07016 ( 552) 65 23.5 9.5 FLJ00270 ( 352 res) sj07613 ( 352) 63 22.6 11 FLJ00366 ( 282 res) sh05203 ( 282) 61 22.0 14 KIAA1046 ( 427 res) hh00940 ( 427) 62 22.5 14 KIAA1173 ( 333 res) hk01721(revised) ( 333) 61 22.1 15 FLJ00248 ( 501 res) sj08681 ( 501) 62 22.7 15 KIAA1437 ( 811 res) hk07206 ( 811) 63 23.3 16 KIAA0046 ( 872 res) ha00519s1 ( 872) 63 23.3 17 FLJ00195 ( 639 res) sj02957 ( 639) 62 22.8 17 KIAA0447 ( 466 res) fh17910 ( 466) 61 22.4 17 KIAA1343 ( 520 res) fj00420 ( 520) 61 22.4 18 KIAA0190 ( 813 res) ha03225 ( 813) 62 23.0 19 KIAA0239 ( 849 res) ha06313 ( 849) 62 23.1 19 FLJ00133 ( 1282 res) sh02303 (1282) 63 23.6 20 KIAA1539 ( 543 res) fg02356 ( 543) 60 22.2 22 KIAA0892 ( 621 res) hk08289 ( 621) 60 22.3 23 KIAA0575 ( 952 res) hj00216 ( 952) 61 22.9 24 KIAA0759 ( 673 res) hk04621 ( 673) 60 22.4 24 KIAA0485 ( 83 res) hg00837 ( 83) 54 19.3 25 KIAA1952 ( 735 res) fj14047 ( 735) 60 22.5 25 KIAA0413 ( 1237 res) hh00077s1 (1237) 61 23.1 27 KIAA1060 ( 887 res) hh13580 ( 887) 60 22.6 28 KIAA0956 ( 672 res) hj05590 ( 672) 59 22.1 29 KIAA1677 ( 521 res) fh18965 ( 521) 58 21.7 30 KIAA0219 ( 2675 res) ha04759s1 (2675) 62 23.9 34 KIAA0233 ( 2035 res) ha04602 (2035) 61 23.5 35 KIAA0057 ( 384 res) ha00909 ( 384) 56 21.0 37 KIAA0555 ( 802 res) hh00882 ( 802) 58 22.0 37 KIAA0927 ( 1001 res) hg03734 (1001) 58 22.2 41 KIAA1382 ( 506 res) fj05641s1 ( 506) 56 21.2 42 KIAA0218 ( 777 res) ha02987 ( 777) 57 21.8 43 KIAA2008 ( 793 res) fj04470 ( 793) 57 21.8 44 FLJ00360 ( 137 res) sh04326 ( 137) 52 19.2 44 >>KIAA0500 ( 213 res) hg00404 (213 aa) initn: 129 init1: 129 opt: 152 Z-score: 208.1 bits: 44.2 E(): 2.2e-06 Smith-Waterman score: 152; 40.964% identity (59.036% similar) in 83 aa overlap (2-80:71-149) 10 20 30 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFG .: ..: : .: . :. . : : KIAA05 SVGEPNMRHKHPLELHRSCALLSSGISLENSSQQLMEVSPVHRLCMDFAQVPFPSCADTC 50 60 70 80 90 100 40 50 60 70 80 FLJ000 LFFFFLFVCL----FCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK .: . . .: : : : :::::::: ::.: :::.:.::::.: :: KIAA05 IFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGN----PPASASRVA 110 120 130 140 150 KIAA05 GSTGACHHAHLIFLSFIDTGLTVAQAGLELLASGDPPALAYQNAGIIGMNHCAWPSL 160 170 180 190 200 210 >>KIAA0364 ( 1437 res) hh00116 (1437 aa) initn: 129 init1: 129 opt: 132 Z-score: 174.3 bits: 40.7 E(): 0.00016 Smith-Waterman score: 132; 57.576% identity (81.818% similar) in 33 aa overlap (48-80:28-60) 20 30 40 50 60 70 FLJ000 DMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLP ::.:::::::.:.: .::.. :::::. KIAA03 RRSLLFSQSPEKFQISSFYTHPGEGKESLSLSPRLECTGAISTHCSFSLLGSSDPPA 10 20 30 40 50 80 FLJ000 QPPK . : KIAA03 SQPSEWLGLQFAASGGAHWRISNIGAGLQLPSHHLLRRKILQDSEHTASTRGPMTLDRPG 60 70 80 90 100 110 >>FLJ00199 ( 383 res) sj03574 (383 aa) initn: 132 init1: 109 opt: 109 Z-score: 148.7 bits: 34.0 E(): 0.0044 Smith-Waterman score: 109; 72.727% identity (90.909% similar) in 22 aa overlap (54-75:293-314) 30 40 50 60 70 80 FLJ000 FFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK ::::::.: :.::::.::: .: FLJ001 SGSTPMPRDGLRNPETASEPLSETESHSVARLECSGAISAQCNLRFLGSRDSPASASQVA 270 280 290 300 310 320 FLJ001 GITARVTAEGVCREAGVPAAPCLPPAGGVRLHLPRRQHAARPREDPHAAPDRGLAAAAGG 330 340 350 360 370 380 >>KIAA1657 ( 127 res) hg00527 (127 aa) initn: 82 init1: 82 opt: 103 Z-score: 144.9 bits: 31.7 E(): 0.0071 Smith-Waterman score: 103; 33.824% identity (61.765% similar) in 68 aa overlap (7-70:46-111) 10 20 30 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFF .. : .: .. ::.:::. ..:::. KIAA16 LSLFLSLSFFLPFFLSFFLSFFLSFFLSLSLSPSFLPSLPLSLPPSFFLSFFL-SFFFFL 20 30 40 50 60 70 40 50 60 70 80 FLJ000 LFVCLFCF----LRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK :.:.. : : .:..:: : : : .: . :.: KIAA16 SFLCFLSFFLSFLSFSFSLSLSLSLSHT-HTHTHTRVLPGKAGMLSFSNVLIHS 80 90 100 110 120 >>KIAA0758 ( 1370 res) hh15259 (1370 aa) initn: 134 init1: 73 opt: 83 Z-score: 109.4 bits: 28.6 E(): 0.68 Smith-Waterman score: 83; 30.233% identity (60.465% similar) in 43 aa overlap (23-65:1115-1157) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLS ::. ::....::..: . :. : : . : KIAA07 LLVANTWFIVVAAIQDNRYILCKTACVAATFFIHFFYLSVFFWMLTLGLMLFYRLVFILH 1090 1100 1110 1120 1130 1140 60 70 80 FLJ000 PRLECSGTILAHCNLRLLGSSNSLPQPPK . . .: : KIAA07 ETSRSTQKAIAFCLGYGCPLAISVITLGATQPREVYTRKNVCWLNWEDTKALLAFAIPAL 1150 1160 1170 1180 1190 1200 >>KIAA0566 ( 1163 res) hh01910 (1163 aa) initn: 75 init1: 75 opt: 81 Z-score: 107.3 bits: 28.0 E(): 0.88 Smith-Waterman score: 81; 42.308% identity (73.077% similar) in 26 aa overlap (18-42:751-776) 10 20 30 40 FLJ000 VNSLRIMASSCTHVVPKDMISFFFF-SFFFFGLFFFFLFVCLFCFLR .:. .::. . .: ::.:.: : : : KIAA05 VMASDFAVPKFRYLERLLILHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFFCGFSAST 730 740 750 760 770 780 50 60 70 80 FLJ000 WSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK KIAA05 MIDQWYLIFFNLLFSSLPPLVTGVLDRDVPANVLLTNPQLYKSGQNMEEYRPRTFWFNMA 790 800 810 820 830 840 >>KIAA0484 ( 97 res) hg00836 (97 aa) initn: 99 init1: 57 opt: 72 Z-score: 104.7 bits: 23.9 E(): 1.2 Smith-Waterman score: 72; 37.778% identity (62.222% similar) in 45 aa overlap (4-44:2-46) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVV--PKDMISFFFFSFFFFGLFFFF--LFVCLFCFLRWSLTLSPRLE : :. : . :: : ... :.. :::: .::.. : : ::. KIAA04 PLMILFISLVTVVMSPFSFLIVFIWVFFFFFFFFWLASLVVYQFCLTFQKTNFYLVDS 10 20 30 40 50 60 70 80 FLJ000 CSGTILAHCNLRLLGSSNSLPQPPK KIAA04 LHFFFVSVAFGSAMLFIFFLSTNCVFDLFLHFEFLEVHH 60 70 80 90 >>KIAA1670 ( 598 res) hh04251 (598 aa) initn: 34 init1: 34 opt: 77 Z-score: 104.5 bits: 26.5 E(): 1.3 Smith-Waterman score: 77; 25.641% identity (53.846% similar) in 78 aa overlap (5-76:106-182) 10 20 FLJ000 VNSLRIMASSC-THVVPKD--MISFFFFS--FFF : . ..: . .:. ..:. .:: . KIAA16 PTSWLVVIMATVGSSFCNVDISLGLVSCIQRCLPQGCGPYQTPQTRALLSMAIFSTGVWV 80 90 100 110 120 130 30 40 50 60 70 80 FLJ000 FGLFFFFLFV-CLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK :.::: . :.:. : . . . : : : .:::.: . . KIAA16 TGIFFFRQTLKLLLCYHGWMFEMHGKTSNLTRIWAMC-IRLLSSRHPMLYSFQTSLPKLP 140 150 160 170 180 190 KIAA16 VPRVSATIQRYLESVRPLLDDEEYYRMELLAKEFQDKTAPRLQKYLVLKSWWASNYVSDW 200 210 220 230 240 250 >>KIAA1651 ( 91 res) fj00563 (91 aa) initn: 61 init1: 61 opt: 70 Z-score: 102.3 bits: 23.4 E(): 1.7 Smith-Waterman score: 70; 64.706% identity (82.353% similar) in 17 aa overlap (59-75:2-18) 30 40 50 60 70 80 FLJ000 FFGLFFFFLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK : : .::::.: :::.: KIAA16 GGMISVHCNLHLPGSSDSPVSASQVAGTTGA 10 20 30 KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH 40 50 60 70 80 90 >>KIAA0817 ( 2785 res) hg01392s2 (2785 aa) initn: 93 init1: 57 opt: 77 Z-score: 98.7 bits: 27.6 E(): 2.7 Smith-Waterman score: 77; 56.522% identity (69.565% similar) in 23 aa overlap (27-47:2589-2610) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFF--FFLFVCLFCFLRWSLTLSPR : ::..:: ::::. : : : : KIAA08 VGDPSGPGANGSADSQGLLFFRQDQAHIDLFVFFSVFFSCFFLFLSL-CVLLWKAKQALD 2560 2570 2580 2590 2600 2610 60 70 80 FLJ000 LECSGTILAHCNLRLLGSSNSLPQPPK KIAA08 QRQEQRRHLQEMTKMASRPFAKVTVCFPPDPTAPASAWKPAGLPPPAFRRSEPFLAPLLL 2620 2630 2640 2650 2660 2670 81 residues in 1 query sequences 2210913 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:30:42 2009 done: Fri Feb 27 10:30:42 2009 Total Scan time: 0.270 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]