# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00047.fasta.nr -Q ../query/FLJ00047.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00047, 81 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825926 sequences Expectation_n fit: rho(ln(x))= 3.9560+/-0.000181; mu= 8.6795+/- 0.010 mean_var=59.2859+/-11.333, 0's: 46 Z-trim: 53 B-trim: 0 in 0/66 Lambda= 0.166571 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440424|dbj|BAB15745.1| FLJ00047 protein [Homo ( 81) 570 144.2 2e-33 gi|119623509|gb|EAX03104.1| hCG1820927, isoform CR ( 114) 237 64.4 3e-09 gi|7020625|dbj|BAA91205.1| unnamed protein product ( 239) 227 62.3 2.6e-08 gi|119578354|gb|EAW57950.1| hypothetical protein F ( 320) 227 62.5 3.2e-08 gi|119594883|gb|EAW74477.1| hCG2040729 [Homo sapie ( 103) 216 59.3 9.4e-08 gi|119631865|gb|EAX11460.1| hCG2038446 [Homo sapie ( 135) 217 59.6 9.5e-08 gi|119628534|gb|EAX08129.1| hCG2038166 [Homo sapie ( 134) 215 59.2 1.3e-07 gi|21758970|dbj|BAC05428.1| unnamed protein produc ( 182) 212 58.6 2.7e-07 gi|34526853|dbj|BAC85291.1| unnamed protein produc ( 148) 210 58.0 3.2e-07 gi|119596287|gb|EAW75881.1| hCG1820854 [Homo sapie ( 117) 206 56.9 5.4e-07 gi|21756629|dbj|BAC04924.1| unnamed protein produc ( 125) 204 56.5 7.9e-07 gi|34526231|dbj|BAC85205.1| unnamed protein produc ( 128) 204 56.5 8e-07 gi|34527126|dbj|BAC85331.1| unnamed protein produc ( 139) 203 56.3 1e-06 gi|119618519|gb|EAW98113.1| hCG2015412 [Homo sapie ( 149) 197 54.9 2.8e-06 gi|34526959|dbj|BAC85304.1| unnamed protein produc ( 137) 195 54.4 3.7e-06 gi|90080672|dbj|BAE89817.1| unnamed protein produc ( 102) 191 53.3 6e-06 gi|119568399|gb|EAW48014.1| hCG2030582 [Homo sapie ( 102) 191 53.3 6e-06 gi|10799024|gb|AAG23169.1|AF269286_1 HC6 [Homo sap ( 134) 192 53.6 6.1e-06 gi|74762627|sp|Q8WTZ3.1|YS049_HUMAN RecName: Full= ( 238) 193 54.2 7.5e-06 gi|90082699|dbj|BAE90531.1| unnamed protein produc ( 58) 185 51.5 1.1e-05 gi|11231093|dbj|BAB18141.1| hypothetical protein [ ( 112) 187 52.3 1.2e-05 gi|119601568|gb|EAW81162.1| hCG1814203 [Homo sapie ( 162) 188 52.8 1.3e-05 gi|119595337|gb|EAW74931.1| hCG1802847, isoform CR ( 683) 191 54.2 2.1e-05 gi|34534001|dbj|BAC86879.1| unnamed protein produc ( 171) 185 52.1 2.3e-05 gi|34531772|dbj|BAC86222.1| unnamed protein produc ( 164) 183 51.6 3.1e-05 gi|90079291|dbj|BAE89325.1| unnamed protein produc ( 99) 181 50.8 3.1e-05 gi|119622549|gb|EAX02144.1| hCG1991981 [Homo sapie ( 136) 182 51.2 3.2e-05 gi|18027310|gb|AAL55737.1|AF289553_1 unknown [Homo ( 109) 181 50.9 3.3e-05 gi|119619680|gb|EAW99274.1| hCG2040594 [Homo sapie ( 98) 180 50.6 3.6e-05 gi|40748273|gb|AAR89620.1| doublesex and mab-3 rel ( 175) 182 51.4 3.8e-05 gi|84579113|dbj|BAE72990.1| hypothetical protein [ ( 138) 181 51.0 3.9e-05 gi|119572084|gb|EAW51699.1| hCG2041074 [Homo sapie ( 84) 179 50.3 3.9e-05 gi|34526292|dbj|BAC85220.1| unnamed protein produc ( 140) 181 51.0 3.9e-05 gi|62087228|dbj|BAD92061.1| 3-mercaptopyruvate sul ( 314) 184 52.1 4e-05 gi|119569936|gb|EAW49551.1| hCG41809 [Homo sapiens ( 106) 179 50.4 4.5e-05 gi|119617617|gb|EAW97211.1| Mdm2, transformed 3T3 ( 86) 177 49.8 5.5e-05 gi|119567918|gb|EAW47533.1| SFT2 domain containing ( 98) 177 49.9 6e-05 gi|26449223|dbj|BAC41739.1| hypothetical protein [ ( 72) 175 49.2 6.8e-05 gi|119611716|gb|EAW91310.1| hCG2038495 [Homo sapie ( 112) 175 49.5 9.2e-05 gi|34526247|dbj|BAC85209.1| unnamed protein produc ( 121) 175 49.5 9.6e-05 gi|78499745|gb|ABB45869.1| Down syndrome encephalo ( 228) 177 50.3 0.0001 gi|82568901|gb|AAH20941.1| FILIP1L protein [Homo s ( 255) 177 50.3 0.00011 gi|21753371|dbj|BAC04333.1| unnamed protein produc ( 129) 174 49.3 0.00012 gi|10438620|dbj|BAB15291.1| unnamed protein produc ( 120) 173 49.0 0.00013 gi|119619879|gb|EAW99473.1| hCG2038249 [Homo sapie ( 90) 171 48.4 0.00015 gi|119575293|gb|EAW54898.1| hCG1811730 [Homo sapie ( 100) 171 48.4 0.00017 gi|34526259|dbj|BAC85212.1| unnamed protein produc ( 125) 170 48.3 0.00023 gi|119569105|gb|EAW48720.1| hCG1820599 [Homo sapie ( 98) 169 48.0 0.00023 gi|119619231|gb|EAW98825.1| hCG2043271, isoform CR ( 78) 168 47.6 0.00023 gi|119615942|gb|EAW95536.1| hCG1980041 [Homo sapie ( 101) 169 48.0 0.00023 >>gi|10440424|dbj|BAB15745.1| FLJ00047 protein [Homo sap (81 aa) initn: 570 init1: 570 opt: 570 Z-score: 756.4 bits: 144.2 E(): 2e-33 Smith-Waterman score: 570; 100.000% identity (100.000% similar) in 81 aa overlap (1-81:1-81) 10 20 30 40 50 60 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGT 10 20 30 40 50 60 70 80 FLJ000 ILAHCNLRLLGSSNSLPQPPK ::::::::::::::::::::: gi|104 ILAHCNLRLLGSSNSLPQPPK 70 80 >>gi|119623509|gb|EAX03104.1| hCG1820927, isoform CRA_a (114 aa) initn: 440 init1: 204 opt: 237 Z-score: 322.2 bits: 64.4 E(): 3e-09 Smith-Waterman score: 237; 55.714% identity (74.286% similar) in 70 aa overlap (6-75:27-91) 10 20 30 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFV ... : .: :. ..::: : :: : .::::.: gi|119 MKMSNRVSDTLQKHQRRSSFPWPSQVLQGHSLAHSSPSHFLSFFSFLFFSFLFFFFFFF- 10 20 30 40 50 40 50 60 70 80 FLJ000 CLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK ::: ::.:::::::::.: :::.::: :: .: gi|119 ----FLRQSLALSPRLECSGAISAHCKLRLPGSRHSPASASRSWDYRHPPPRSANFLYF 60 70 80 90 100 110 >>gi|7020625|dbj|BAA91205.1| unnamed protein product [Ho (239 aa) initn: 205 init1: 205 opt: 227 Z-score: 305.4 bits: 62.3 E(): 2.6e-08 Smith-Waterman score: 227; 57.143% identity (71.429% similar) in 70 aa overlap (6-75:85-150) 10 20 30 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFF :. . . :. . : ...: : : :: gi|702 AENTQQDECGLPGSCPARPLSRKPECGREGILPCCSSSAWPEGSFRPFQMNLFSF-LSFF 60 70 80 90 100 110 40 50 60 70 80 FLJ000 FLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK ::: : :::::::::::::::..: ::::::: ::::: gi|702 FLF---FFFLRWSLTLSPRLECSSAISAHCNLRLPGSSNSPALASQVAGITGICHHARQI 120 130 140 150 160 170 gi|702 FVFLVETGFCHVGQAGLELLISGDSPASAFQSAGIIGVSHRARPGSVFLARSEESLYLRP 180 190 200 210 220 230 >>gi|119578354|gb|EAW57950.1| hypothetical protein FLJ20 (320 aa) initn: 205 init1: 205 opt: 227 Z-score: 303.9 bits: 62.5 E(): 3.2e-08 Smith-Waterman score: 227; 57.143% identity (71.429% similar) in 70 aa overlap (6-75:166-231) 10 20 30 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFF :. . . :. . : ...: : : :: gi|119 AENTQQDECGLPGSCPARPLSRKPECGREGILPCCSSSAWPEGSFRPFQMNLFSF-LSFF 140 150 160 170 180 190 40 50 60 70 80 FLJ000 FLFVCLFCFLRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK ::: : :::::::::::::::..: ::::::: ::::: gi|119 FLF---FFFLRWSLTLSPRLECSSAISAHCNLRLPGSSNSPALASQVAGITGICHHARQI 200 210 220 230 240 250 gi|119 FVFLVETGFCHVGQAGLELLISGDSPASAFQSAGIIGVSHRARPGSVFLARSEESLYLRP 260 270 280 290 300 310 >>gi|119594883|gb|EAW74477.1| hCG2040729 [Homo sapiens] (103 aa) initn: 242 init1: 212 opt: 216 Z-score: 295.4 bits: 59.3 E(): 9.4e-08 Smith-Waterman score: 216; 60.000% identity (78.182% similar) in 55 aa overlap (21-75:45-98) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLT :.. . .: :: ::.. :. ::::::. gi|119 NCCSYRISHLYSLCFCLFLFFSHNQWETNQSLWVYPVVLF-LFPFFVLFCFVLFLRWSLA 20 30 40 50 60 70 60 70 80 FLJ000 LSPRLECSGTILAHCNLRLLGSSNSLPQPPK :::::::::.: ::::: : :::.: gi|119 LSPRLECSGAISAHCNLCLTGSSHSSASAS 80 90 100 >>gi|119631865|gb|EAX11460.1| hCG2038446 [Homo sapiens] (135 aa) initn: 427 init1: 208 opt: 217 Z-score: 295.4 bits: 59.6 E(): 9.5e-08 Smith-Waterman score: 217; 57.895% identity (80.702% similar) in 57 aa overlap (19-75:19-75) 10 20 30 40 50 60 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGT .:.:. ... . : ::.: .: .:::::.::::::::: gi|119 DRFLFTYYPRPKPVTFSKIINFYSPQLLCIMLPCFFFFFFFFLMLRWSLALSPRLECSGR 10 20 30 40 50 60 70 80 FLJ000 ILAHCNLRLLGSSNSLPQPPK ::::::::: ::..: gi|119 ILAHCNLRLPGSNDSPASASPVAGITGACHHAQLIFVFLVETGFHHVVQAGLDLLTSGDP 70 80 90 100 110 120 >>gi|119628534|gb|EAX08129.1| hCG2038166 [Homo sapiens] (134 aa) initn: 202 init1: 202 opt: 215 Z-score: 292.8 bits: 59.2 E(): 1.3e-07 Smith-Waterman score: 215; 56.452% identity (77.419% similar) in 62 aa overlap (20-75:4-65) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLF-----VC-LFCFLRWSLTLSPR ::.:: .: ... .. .: : .:::::: :.:::: gi|119 GYTISIFFKCLFAISIDIYNFFPGVQRFCPIFCFLRWCLALSPR 10 20 30 40 60 70 80 FLJ000 LECSGTILAHCNLRLLGSSNSLPQPPK :.:::.:::::::.: ::::: gi|119 LKCSGVILAHCNLHLPGSSNSPASSSPVAGITGAHHQARLFFVFLVETGFHHASQAGLKF 50 60 70 80 90 100 >>gi|21758970|dbj|BAC05428.1| unnamed protein product [H (182 aa) initn: 260 init1: 203 opt: 212 Z-score: 287.3 bits: 58.6 E(): 2.7e-07 Smith-Waterman score: 215; 50.704% identity (71.831% similar) in 71 aa overlap (19-80:26-92) 10 20 30 40 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSF--------FFFGLFFFFLFVCL-FCF .. .::.:: ::..: ::: :. . ::: gi|217 MTSFPMKPSLSLSIHSFLYHESIFLLLFLFFLSFLSLSLALSFFLSLSFFFCFLFFVFCF 10 20 30 40 50 60 50 60 70 80 FLJ000 LRWSLTLSPRLECSGTILAHCNLRLLGSSNSLPQPPK :: .:::.:::::::::..::.: : ::.. :: gi|217 LRQGLTLAPRLECSGTIMVHCSLDLTGSNH----PPALASQVAWTTGMHHHAQIIFFLFF 70 80 90 100 110 gi|217 VETGSHYVTQTGLEFLGSSDSPTSASQSAGITSVSHCTQPMFSIKMVLFETMACHVYIIL 120 130 140 150 160 170 >>gi|34526853|dbj|BAC85291.1| unnamed protein product [H (148 aa) initn: 231 init1: 159 opt: 210 Z-score: 285.8 bits: 58.0 E(): 3.2e-07 Smith-Waterman score: 210; 66.667% identity (85.417% similar) in 48 aa overlap (28-75:43-89) 10 20 30 40 50 FLJ000 VNSLRIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLEC :.: ...::.:. :: ::::::.:::::: gi|345 EMTSRKKNNVKEEEMECAVTYLRKGGGICSFYFYFYLFFIFIYLF-FLRWSLALSPRLEW 20 30 40 50 60 70 60 70 80 FLJ000 SGTILAHCNLRLLGSSNSLPQPPK ::.: ::::::: :: .: gi|345 SGAISAHCNLRLPGSCHSSASASRVAGTAGARHHALLIFYIFSRDGVSPWSRSPHLVVCP 80 90 100 110 120 130 >>gi|119596287|gb|EAW75881.1| hCG1820854 [Homo sapiens] (117 aa) initn: 206 init1: 206 opt: 206 Z-score: 281.8 bits: 56.9 E(): 5.4e-07 Smith-Waterman score: 206; 75.610% identity (85.366% similar) in 41 aa overlap (35-75:45-85) 10 20 30 40 50 60 FLJ000 RIMASSCTHVVPKDMISFFFFSFFFFGLFFFFLFVCLFCFLRWSLTLSPRLECSGTILAH ::. .:.: ::: :::: :::::::.: :: gi|119 ELPEKFEVLACSLPSRNNDLILSLKKKISEFFFCLCFFFFLRQSLTLLPRLECSGAISAH 20 30 40 50 60 70 70 80 FLJ000 CNLRLLGSSNSLPQPPK ::::: ::::: gi|119 CNLRLPGSSNSPASASQVAATTGAAPPRPANFCIFSRDRVSPY 80 90 100 110 81 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:40:23 2009 done: Fri Feb 27 16:44:02 2009 Total Scan time: 463.280 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]