# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00049.fasta.huge -Q ../query/FLJ00049.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00049, 133 aa vs ./tmplib.10216 library 2210861 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.5795+/-0.0051; mu= 16.4872+/- 0.345 mean_var=159.2293+/-34.206, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.101640 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0400 ( 1022 res) hg01091 (1022) 114 27.5 1.7 KIAA1139 ( 1124 res) hk00330 (1124) 110 27.0 2.7 FLJ00402 ( 137 res) sj07511 ( 137) 97 23.5 3.8 FLJ00420 ( 613 res) sj09535 ( 613) 100 25.1 5.6 KIAA0310 ( 2388 res) ee03470 (2388) 103 26.6 7.8 KIAA0992 ( 772 res) hk07554 ( 772) 96 24.7 9.4 KIAA1662 ( 1653 res) fj03879s1 (1653) 99 25.7 9.9 KIAA0592 ( 1353 res) hj02807 (1353) 98 25.4 10 KIAA1511 ( 1253 res) fg04486(revised) (1253) 97 25.2 11 KIAA1218 ( 864 res) fh03016 ( 864) 95 24.6 11 KIAA1865 ( 723 res) fj14303 ( 723) 94 24.3 11 KIAA0945 ( 797 res) hj04760 ( 797) 92 24.1 14 KIAA1063 ( 593 res) hj04848 ( 593) 90 23.6 15 KIAA0338 ( 934 res) hg01242 ( 934) 92 24.2 15 KIAA1623 ( 1236 res) fj04650 (1236) 93 24.6 16 KIAA0058 ( 181 res) ha01532 ( 181) 84 21.8 16 KIAA1760 ( 2219 res) af00030 (2219) 95 25.3 17 KIAA1522 ( 1044 res) fh14706(revised) (1044) 91 24.2 18 KIAA1213 ( 484 res) fh01142 ( 484) 87 23.0 19 KIAA0498 ( 111 res) hg00157 ( 111) 80 20.8 19 KIAA1187 ( 813 res) fk03027 ( 813) 89 23.7 20 FLJ00280 ( 440 res) sh01728 ( 440) 86 22.8 20 KIAA1065 ( 665 res) hj05094 ( 665) 87 23.2 22 FLJ00287 ( 186 res) sh02562 ( 186) 81 21.4 22 KIAA1311 ( 889 res) fh11512 ( 889) 88 23.6 23 KIAA0307 ( 716 res) hg00066 ( 716) 87 23.3 23 FLJ00406 ( 261 res) sj08464 ( 261) 82 21.8 24 KIAA1736 ( 1244 res) ph00725 (1244) 89 24.0 24 KIAA0616 ( 634 res) hg03623 ( 634) 85 22.9 26 KIAA0910 ( 1315 res) hg02207s1 (1315) 88 23.9 27 KIAA1513 ( 649 res) fh00168(revised) ( 649) 84 22.8 29 FLJ00028 ( 91 res) as00028 ( 91) 75 19.9 29 KIAA1991 ( 712 res) bf00209 ( 712) 84 22.9 31 KIAA0733 ( 698 res) hk03729s1 ( 698) 83 22.7 33 FLJ00003 ( 235 res) as00003 ( 235) 78 21.1 34 KIAA1869 ( 935 res) hh01800 ( 935) 84 23.1 35 KIAA0595 ( 1666 res) hj02929s1 (1666) 86 23.8 37 KIAA1608 ( 872 res) fj20142 ( 872) 83 22.9 37 FLJ00224 ( 896 res) sj06244 ( 896) 83 22.9 38 KIAA0460 ( 1452 res) bj00064 (1452) 85 23.5 38 FLJ00096 ( 208 res) as00096 ( 208) 76 20.7 39 FLJ00349 ( 146 res) sg00018 ( 146) 74 20.2 40 KIAA0181 ( 2079 res) ha02522s1 (2079) 86 24.0 41 FLJ00043 ( 1415 res) as00043 (1415) 84 23.4 42 FLJ00376 ( 931 res) sh07947 ( 931) 82 22.8 42 FLJ00050 ( 270 res) as00050 ( 270) 76 20.9 44 FLJ00056 ( 1310 res) as00056 (1310) 83 23.2 45 KIAA1295 ( 550 res) fg01760 ( 550) 79 21.9 45 KIAA0600 ( 1080 res) fh08981 (1080) 82 22.9 45 KIAA1811 ( 715 res) ha06731 ( 715) 80 22.3 46 >>KIAA0400 ( 1022 res) hg01091 (1022 aa) initn: 45 init1: 45 opt: 114 Z-score: 102.1 bits: 27.5 E(): 1.7 Smith-Waterman score: 114; 31.776% identity (51.402% similar) in 107 aa overlap (25-121:830-930) 10 20 30 40 50 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSE----EKPLQPSAWPGINPLQ :: :. :.:. . :: : . ::: KIAA04 APPLPPRNVGKVQTASSANTLWKTNSVSVDGGSRQRSSSDPPAVHPPLPPLRVTSTNPLT 800 810 820 830 840 850 60 70 80 90 100 FLJ000 PQEVVPPQAANKAVPELCLWMTEP-RPVPQG-SALR---LCPGTPGRAHVGASRSLPAMR : .:: . :. : . ...: .:.: : : .: : : :.: . .. :. KIAA04 P---TPPPPVAKT-PSVMEALSQPSKPAPPGISQIRPPPLPPQPPSR--LPQKKPAPGAD 860 870 880 890 900 910 110 120 130 FLJ000 MRCPGTSLLQ-LGPVGLCLLSRAPWRCHF : :. : ::: : KIAA04 KSTPLTNKGQPRGPVDLSATEALGPLSNAMVLQPPAPMPRKSQATKLKPKRVKALYNCVA 920 930 940 950 960 970 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 75 init1: 47 opt: 110 Z-score: 98.6 bits: 27.0 E(): 2.7 Smith-Waterman score: 110; 37.500% identity (53.750% similar) in 80 aa overlap (20-90:618-693) 10 20 30 40 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGER-KNSG-SEEKPL-QPSAWPGI :. . : : ..:: :.:.: ::: : KIAA11 TFQGSELSPELQAAMAGGGPEPLPLPPARSPSQESIGARSRGSGHSQEQPAPQPS---GG 590 600 610 620 630 640 50 60 70 80 90 100 FLJ000 NPLQPQEVVPPQAANKAVPELC--LWMTEPRPV----PQGSALRLCPGTPGRAHVGASRS .: ::: :..... :.:: : : : :::: :: : KIAA11 DPSPPQERNLPEGTERP-PKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYL 650 660 670 680 690 700 110 120 130 FLJ000 LPAMRMRCPGTSLLQLGPVGLCLLSRAPWRCHF KIAA11 AGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRT 710 720 730 740 750 760 >>FLJ00402 ( 137 res) sj07511 (137 aa) initn: 59 init1: 59 opt: 97 Z-score: 95.9 bits: 23.5 E(): 3.8 Smith-Waterman score: 97; 26.829% identity (47.561% similar) in 82 aa overlap (37-111:17-93) 10 20 30 40 50 FLJ000 PGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPP-------QA :. :. :.. : : . :: . FLJ004 QVSLVRTMPSRCHCHSPILPNP-PSLPPSLPTLIPPPFLLWGKFSH 10 20 30 40 60 70 80 90 100 110 FLJ000 ANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPV ... .: .: :: : . :. ::. :.. :: : . ::: FLJ004 SHSQTPAPRIWAQGPRSRDAGRG----PAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 50 60 70 80 90 100 120 130 FLJ000 GLCLLSRAPWRCHF FLJ004 AREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 110 120 130 >>FLJ00420 ( 613 res) sj09535 (613 aa) initn: 78 init1: 53 opt: 100 Z-score: 92.9 bits: 25.1 E(): 5.6 Smith-Waterman score: 100; 32.051% identity (48.718% similar) in 78 aa overlap (33-105:505-580) 10 20 30 40 50 FLJ000 ASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAW--P---GINPLQPQEVVPP : . ::: : : :. :: : .. FLJ004 AISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLTKE 480 490 500 510 520 530 60 70 80 90 100 110 FLJ000 QAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLG : ..:. : : :.: .. .: :::: : ..: : : FLJ004 QLYQQAMEEAA-WHHMPHP-SDSERIRTSPGTPVRRPPTTTRCHPHTRTLWNSTSACRPR 540 550 560 570 580 590 120 130 FLJ000 PVGLCLLSRAPWRCHF FLJ004 HSSSSSTIWRALRHSIWQPRP 600 610 >>KIAA0310 ( 2388 res) ee03470 (2388 aa) initn: 83 init1: 51 opt: 103 Z-score: 90.3 bits: 26.6 E(): 7.8 Smith-Waterman score: 103; 28.889% identity (57.778% similar) in 90 aa overlap (44-129:1083-1171) 20 30 40 50 60 70 FLJ000 RLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQ--AANKAVPE-LCLW ::.. : ::.:::: :. .:. . KIAA03 SVASHPRQSGPGAPNLDRFYQQVTKDAQGQPGLERAQ-QELVPPQQQASPPQLPKAMFSE 1060 1070 1080 1090 1100 1110 80 90 100 110 120 FLJ000 MTEPRPVP-QGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVGLCLLSRAPW ...:. .: ::.: . . . : :...:: . ..::.. : . :. :: KIAA03 LSNPESLPAQGQAQNSAQSPASLVLVDAGQQLPPRPPQSSSVSLVSSGSGQAAVPSEQPW 1120 1130 1140 1150 1160 1170 130 FLJ000 RCHF KIAA03 PQPVPALAPGPPPQDLAAYYYYRPLYDAYQPQYSLPYPPEPGAASLYYQDVYSLYEPRYR 1180 1190 1200 1210 1220 1230 >>KIAA0992 ( 772 res) hk07554 (772 aa) initn: 70 init1: 43 opt: 96 Z-score: 88.9 bits: 24.7 E(): 9.4 Smith-Waterman score: 96; 28.571% identity (47.619% similar) in 105 aa overlap (6-105:16-113) 10 20 30 40 50 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQ .:: : ..: :: . :. . : . ::. . . :. KIAA09 PESPGGRGIKPDTCPAPGPRSPLQLPLA-PDAESGSSGRRPGEPRDPLKLQQLQNQIRLE 10 20 30 40 50 60 70 80 90 100 FLJ000 PQEVV--PPQAANKAVPELCLWMTEPRPVPQG-SALRLC--PGTPGRAHVGASRSLPAMR . . :: : .: : . : : : . : : :..: . :::: :::. KIAA09 QEAGARQPPPAPRSAPP------SPPFPPPPAFPELAACTPPASPEPMSALASRSAPAMQ 60 70 80 90 100 110 110 120 130 FLJ000 MRCPGTSLLQLGPVGLCLLSRAPWRCHF KIAA09 SSGSFNYARPKQFIAAQNLGPASGHGTPASSPSSSSLPSPMSPTPRQFGRAPVPPFAQPF 120 130 140 150 160 170 >>KIAA1662 ( 1653 res) fj03879s1 (1653 aa) initn: 69 init1: 45 opt: 99 Z-score: 88.5 bits: 25.7 E(): 9.9 Smith-Waterman score: 99; 28.814% identity (51.695% similar) in 118 aa overlap (20-128:377-489) 10 20 30 40 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPL :: .:.. .. ...::: : :. KIAA16 IPPAVCIGHRDAPRASSPPRHTQFDPFPFLPD-TSDAEHQCQSPQHEPLQLPAPVCIGYR 350 360 370 380 390 400 50 60 70 80 90 100 FLJ000 Q-PQEVVPPQAANKAVPELCLWMTEPRP-----VPQGSALRLCPGTPGRAHVGASRSLPA . :. ::. : . : : :.. :: ::. ..:. :: : . .: :. :. KIAA16 DAPRASSPPRQAPE--PSL-LFQDLPRASTESLVPSMDSLHECPHIPTPVCIG-HRDAPS 410 420 430 440 450 460 110 120 130 FLJ000 MRM---RCPGTSLLQLGPVGLCLLSRAPWRCHF . . : ::. : : . : :: KIAA16 FSSPPRQAPEPSLFFQDPPGTSMESLAPSTDSLHGSPVLIPQVCIGHRDAPRASSPPRHP 470 480 490 500 510 520 >>KIAA0592 ( 1353 res) hj02807 (1353 aa) initn: 47 init1: 47 opt: 98 Z-score: 88.4 bits: 25.4 E(): 10 Smith-Waterman score: 98; 33.333% identity (58.974% similar) in 78 aa overlap (32-103:957-1031) 10 20 30 40 50 FLJ000 SASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEK----PLQPSAWPGINP--LQPQEVV ::.:: : :.: .::: : : . KIAA05 QPLVQEKKRVVKKDHSVNSFKNQKHPESIQGSKEKGIWKPETPQANLAINPAALLPTAAS 930 940 950 960 970 980 60 70 80 90 100 110 FLJ000 PPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQ . .. ..::: . .: : .. .:. : :: ...:.: .::: KIAA05 QISEVKPVLPELAFPSSEHR---RSHGLESVPVLPGSGEAGVSFDLPAQADTLHSANKSR 990 1000 1010 1020 1030 1040 120 130 FLJ000 LGPVGLCLLSRAPWRCHF KIAA05 VKMRGKRRPQTRAARRLAAQESSEAEDMSIPRGPIAQWADGAISPNGHRPQLRAASGEDS 1050 1060 1070 1080 1090 1100 >>KIAA1511 ( 1253 res) fg04486(revised) (1253 aa) initn: 92 init1: 47 opt: 97 Z-score: 87.9 bits: 25.2 E(): 11 Smith-Waterman score: 97; 27.723% identity (47.525% similar) in 101 aa overlap (1-94:6-99) 10 20 30 40 50 FLJ000 LSASRSPGDGSLVRLSECWPDWQR----GGERKNSGSEEKPLQPSAWPGINPLQP : . :.:: : : : : .: :.. . . : ::: .: :: KIAA15 AGRPRLPSRRAPGPG---RGSPLGPAGSRVLSPRPPRRHRWALARGAWP--WPG-SPPQP 10 20 30 40 50 60 70 80 90 100 FLJ000 QEVVPPQAANKAVPELCLWMTEPR---PVPQGSALRLCPGTPGRAHVGASRSLPAMRMRC .. :::..... : . . . : : . : : : .:: KIAA15 EQPPPPQSVSQS-PAMADGGEREELLSPSPVSPAKRQCSWPSPQAHHPRGSPGAAGGGAG 60 70 80 90 100 110 110 120 130 FLJ000 PGTSLLQLGPVGLCLLSRAPWRCHF KIAA15 GVGSSCLVLGARPHLQPDSLLDCAAKTVAEKWAYERVEERFERIPEPVQRRIVYWSFPRN 120 130 140 150 160 170 >>KIAA1218 ( 864 res) fh03016 (864 aa) initn: 59 init1: 59 opt: 95 Z-score: 87.7 bits: 24.6 E(): 11 Smith-Waterman score: 95; 31.250% identity (57.500% similar) in 80 aa overlap (21-99:776-851) 10 20 30 40 50 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQ : ..: .::::.: : . . ::.: .. KIAA12 CPLSVPSLALHAGDLSLASHNAVSSLPLSFDKSEGKKRKNSSSSSKACKITKMPGMNSVH 750 760 770 780 790 800 60 70 80 90 100 FLJ000 PQEVVPPQAANKAVPELCLWMTEPRPVPQGSALRLCPGTPGR-AHVGASRSLPAMRMRCP .. ::. ::. . : : : ..:.: : ..:. . : :: KIAA12 KKN--PPSLLAP-VPDP-VNSTSSRQVGKNSSLALSQSSPSSISSPGHSRQNTNRTGRIR 810 820 830 840 850 860 110 120 130 FLJ000 GTSLLQLGPVGLCLLSRAPWRCHF KIAA12 TLP 133 residues in 1 query sequences 2210861 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:30:43 2009 done: Fri Feb 27 10:30:44 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]