# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00049.fasta.nr -Q ../query/FLJ00049.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00049, 133 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826185 sequences Expectation_n fit: rho(ln(x))= 5.1988+/-0.000186; mu= 6.7866+/- 0.010 mean_var=82.3341+/-15.926, 0's: 40 Z-trim: 42 B-trim: 78 in 2/66 Lambda= 0.141346 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440428|dbj|BAB15747.1| FLJ00049 protein [Homo ( 133) 976 207.4 5.1e-52 gi|119607652|gb|EAW87246.1| hCG1998993 [Homo sapie ( 133) 959 203.9 5.6e-51 >>gi|10440428|dbj|BAB15747.1| FLJ00049 protein [Homo sap (133 aa) initn: 976 init1: 976 opt: 976 Z-score: 1090.1 bits: 207.4 E(): 5.1e-52 Smith-Waterman score: 976; 100.000% identity (100.000% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAA 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 NKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 NKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVG 70 80 90 100 110 120 130 FLJ000 LCLLSRAPWRCHF ::::::::::::: gi|104 LCLLSRAPWRCHF 130 >>gi|119607652|gb|EAW87246.1| hCG1998993 [Homo sapiens] (133 aa) initn: 959 init1: 959 opt: 959 Z-score: 1071.4 bits: 203.9 E(): 5.6e-51 Smith-Waterman score: 959; 98.496% identity (98.496% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 FLJ000 LSASRSPGDGSLVRLSECWPDWQRGGERKNSGSEEKPLQPSAWPGINPLQPQEVVPPQAA :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|119 LSASRSPGDGSLVRLSECWPDWQRGGERKNPGSEEKPLQPSAWPGINPLQPQEVVPPQAA 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 NKAVPELCLWMTEPRPVPQGSALRLCPGTPGRAHVGASRSLPAMRMRCPGTSLLQLGPVG ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: gi|119 NKAVPELCLWMTEPRPVPQGSALRLCPGTPGCAHVGASRSLPAMRMRCPGTSLLQLGPVG 70 80 90 100 110 120 130 FLJ000 LCLLSRAPWRCHF ::::::::::::: gi|119 LCLLSRAPWRCHF 130 133 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:48:25 2009 done: Fri Feb 27 16:52:20 2009 Total Scan time: 562.090 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]