# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00060.fasta.huge -Q ../query/FLJ00060.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00060, 227 aa vs ./tmplib.10216 library 2210767 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.2982+/-0.00343; mu= 21.3722+/- 0.232 mean_var=74.6965+/-16.935, 0's: 0 Z-trim: 2 B-trim: 9 in 1/39 Lambda= 0.148397 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00275 ( 382 res) sh00566 ( 382) 366 86.8 1.6e-18 KIAA0364 ( 1437 res) hh00116 (1437) 248 62.5 1.2e-10 KIAA1161 ( 680 res) hj01210s1 ( 680) 86 27.3 2.3 KIAA1061 ( 693 res) hj00491 ( 693) 83 26.7 3.6 FLJ00185 ( 824 res) sj01856 ( 824) 83 26.8 3.9 KIAA0208 ( 748 res) ha02713 ( 748) 81 26.3 5.1 KIAA1894 ( 2977 res) ff08107 (2977) 85 28.2 5.5 FLJ00328 ( 238 res) sj02853 ( 238) 75 24.2 7 KIAA1292 ( 595 res) hk05468(revised) ( 595) 77 25.3 8.2 KIAA1118 ( 1165 res) hk07196(revised) (1165) 79 26.2 8.4 KIAA0657 ( 1237 res) hk01859s1 (1237) 79 26.2 8.7 KIAA0842 ( 1020 res) hk05077 (1020) 77 25.7 11 KIAA1739 ( 963 res) pj00464 ( 963) 76 25.4 12 KIAA1867 ( 779 res) fj18636 ( 779) 75 25.0 13 KIAA1589 ( 816 res) fj08951 ( 816) 75 25.1 13 KIAA0549 ( 469 res) hh00779 ( 469) 73 24.2 13 KIAA0804 ( 1211 res) hk01186(revised) (1211) 76 25.6 13 KIAA1263 ( 850 res) hj00608 ( 850) 74 24.9 15 KIAA1225 ( 1371 res) fh04221s1 (1371) 75 25.5 17 KIAA0316 ( 1379 res) fg06820 (1379) 75 25.5 17 FLJ00094 ( 376 res) as00094 ( 376) 70 23.4 18 FLJ00264 ( 644 res) sj01648 ( 644) 71 24.0 21 KIAA0733 ( 698 res) hk03729s1 ( 698) 71 24.1 22 KIAA0045 ( 2005 res) ha00941 (2005) 74 25.5 23 FLJ00382 ( 482 res) sj02645 ( 482) 69 23.4 24 FLJ00259 ( 659 res) sh04102 ( 659) 70 23.9 24 FLJ00070 ( 1382 res) as00070 (1382) 72 24.8 26 KIAA1326 ( 424 res) fh14376 ( 424) 68 23.1 26 KIAA1614 ( 1208 res) fj12973 (1208) 71 24.5 28 KIAA0940 ( 699 res) hh04894 ( 699) 69 23.7 29 KIAA0758 ( 1370 res) hh15259 (1370) 71 24.6 30 FLJ00403 ( 225 res) sj07657 ( 225) 65 22.0 30 KIAA0010 ( 1086 res) ha00408 (1086) 70 24.2 31 KIAA1357 ( 836 res) fj01906 ( 836) 69 23.8 31 KIAA1745 ( 893 res) pj01678 ( 893) 69 23.9 32 FLJ00300 ( 283 res) sh04156 ( 283) 65 22.2 33 KIAA1195 ( 717 res) fg01739 ( 717) 68 23.5 34 KIAA1522 ( 1044 res) fh14706(revised) (1044) 69 24.0 35 KIAA1577 ( 743 res) fj03457 ( 743) 67 23.3 40 KIAA0864 ( 1402 res) hk06577s1 (1402) 69 24.2 40 KIAA0200 ( 1042 res) ha02508 (1042) 68 23.8 41 KIAA0806 ( 1073 res) hk04165(revised) (1073) 68 23.8 41 KIAA0219 ( 2675 res) ha04759s1 (2675) 71 25.1 41 FLJ00252 ( 819 res) sj09394 ( 819) 67 23.4 42 KIAA0490 ( 135 res) hh00727 ( 135) 61 20.8 42 KIAA2035 ( 1135 res) ff09201 (1135) 68 23.8 42 KIAA0775 ( 639 res) hk05255 ( 639) 66 23.0 43 KIAA0296 ( 1838 res) hf00260 (1838) 69 24.4 46 KIAA1085 ( 584 res) hj07690 ( 584) 65 22.7 48 KIAA1125 ( 1205 res) hk07594 (1205) 67 23.7 50 >>FLJ00275 ( 382 res) sh00566 (382 aa) initn: 352 init1: 252 opt: 366 Z-score: 426.1 bits: 86.8 E(): 1.6e-18 Smith-Waterman score: 459; 39.796% identity (67.857% similar) in 196 aa overlap (2-195:103-295) 10 20 30 FLJ000 TPLSLL-SGLFTKPSISAHPSSLVHAGARVS :: :. .:. :::. .:.: :. .. FLJ002 KFHIPSTVYDSAGRYRCYYETPAGWSEPSDPLELVATGVSRKPSLLIPQGSVVARGGSLT 80 90 100 110 120 130 40 50 60 70 80 90 FLJ000 LRCHSELAFDEFILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCF :.:.:....: :.:::::. . : : .::. .: :..:::. .:.: ::: : FLJ002 LQCRSDVGYDIFVLYKEGEHDLVQGSGQQPQAGLS--QANFTLGPVSRSHGGQYRCYGAH 140 150 160 170 180 190 100 110 120 130 140 FLJ000 SHSRYEWSAPSDPLDIVITGKYKK-PSLSTQVDPMMRLGEKLTLFCSSEISFDQYHLFRH . : .::::::::::.:.: :.::.: : . ::..::.:.: ..: . : .. FLJ002 NLSP-RWSAPSDPLDILIAGLIPDIPALSVQPGPKVASGENVTLLCQSWHQIDTFFLTKE 200 210 220 230 240 150 160 170 180 190 200 FLJ000 GVAHGQWLSGGQRHREAFQANFSVGRATPVPGGTYRCYGSFNDSPYKPPVTRCNFTPQET :.:: .. . ::.::.. .: . :::::::... . :: FLJ002 GAAHPPLCLKSKYQSYRHQAEFSMSPVTSAQGGTYRCYSAIRSYPYLLSSPSYPQELVVS 250 260 270 280 290 300 210 220 FLJ000 LRVLLCHSQNPPLNLVSK FLJ002 GEGPDPVLSKLKGSAQALPPGELWAGMESRCGGEGLRGAQPEGDSPLRGEEDNGGSPGMP 310 320 330 340 350 360 >>KIAA0364 ( 1437 res) hh00116 (1437 aa) initn: 187 init1: 187 opt: 248 Z-score: 284.5 bits: 62.5 E(): 1.2e-10 Smith-Waterman score: 278; 31.132% identity (54.245% similar) in 212 aa overlap (7-210:781-978) 10 20 30 FLJ000 TPLSLLSGLFTKPSISAHPSSLVHAGARVSLRCHSE . .. :: ::: :. : ...:::.. KIAA03 LTQSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASPTI---RGQELQLRCKGW 760 770 780 790 800 40 50 60 70 80 90 FLJ000 LAFDEFILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCFSHSRYE :: : :::::. . ::: : :: :.. . : : : . .. KIAA03 LAGMGFALYKEGEQEPVQQL------GAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFK 810 820 830 840 850 860 100 110 120 130 140 150 FLJ000 WSAPSDPLDIVITGKYKKPSLSTQVDPMMRLGEKLTLFCSSEISFDQYHLFRHG--VAHG :: ::.::..:: : :: ..: ..:.. : ..:. ::. . .. :.. : .: . KIAA03 WSEPSEPLELVIKEMYPKPFFKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASS 870 880 890 900 910 920 160 170 180 190 200 FLJ000 Q--WLSGGQRHREAFQANFSVGRATPVPGGTYRC-YGSFN--DSPYKP-PVTRCNFTPQE . : : : : :.: . . ::.: : : .:. . : : .. .: :. KIAA03 DRSWASPG-----ASAAHFLIISVGIGDGGNYSCRYYDFSIWSEPSDPVELVVTEFYPKP 930 940 950 960 970 210 220 FLJ000 TLRVLLCHSQNPPLNLVSK :: KIAA03 TLLAQPGPVVFPGKSVILRCQGTFQGMRFALLQEGAHVPLQFRSVSGNSADFLLHTVGAE 980 990 1000 1010 1020 1030 >>KIAA1161 ( 680 res) hj01210s1 (680 aa) initn: 49 init1: 49 opt: 86 Z-score: 99.9 bits: 27.3 E(): 2.3 Smith-Waterman score: 86; 25.547% identity (51.095% similar) in 137 aa overlap (89-212:124-249) 60 70 80 90 100 110 FLJ000 GMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCFSHSRYEWSAPSDPLD-IVITGK-----Y :. . :.: .::. .. .. : : KIAA11 DGALLGCSLTADGLPLHFFIQTVRPKDTVMCY-RVRWEEAAPGRAVEHAMFLGDAAAHWY 100 110 120 130 140 150 120 130 140 150 160 170 FLJ000 KKPSLSTQVDPMMRLGEKLTL-FCSSEISFDQYHLFRHGVAHGQWLSGGQRHREAFQANF . :: :. :.. : .:.. ... : :. . :::. . :...: KIAA11 GGAEMRTQHWPIRLDGQQEPQPFVTSDV-YSSDAAF-GGILERYWLSS---RAAAIKVND 160 170 180 190 200 180 190 200 210 220 FLJ000 SVGRATPVPGG------TYRCYGSFNDSPYKPPVTRCNFTPQETLRVLLCHSQNPPLNLV :: : : . : . ..:.:::::. : .:. . :: KIAA11 SV----PFHLGWNSTERSLRLQARYHDTPYKPPAGRAA-APELSYRVCVGSDVTSIHKYM 210 220 230 240 250 260 FLJ000 SK KIAA11 VRRYFNKPSRVPAPEAFRDPIWSTWALYGRAVDQDKVLRFAQQIRLHHFNSSHLEIDDMY 270 280 290 300 310 320 >>KIAA1061 ( 693 res) hj00491 (693 aa) initn: 47 init1: 47 opt: 83 Z-score: 96.3 bits: 26.7 E(): 3.6 Smith-Waterman score: 83; 27.632% identity (57.895% similar) in 76 aa overlap (13-86:192-264) 10 20 30 40 FLJ000 TPLSLLSGLFTKPSISAHPSSLVHA-GARVSLRCHSE-LAFD : : ..: : .. :. .:::::.: . . KIAA10 VTTIHMGNYTCHASGHEQLFQTHVLQVNVPPVIRVYPESQAQEPGVAASLRCHAEGIPMP 170 180 190 200 210 220 50 60 70 80 90 100 FLJ000 EFILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCFSHSRYEWSAP .. :.: .. : :... . . : . .. : .::: : KIAA10 RITWLKNG-VDVSTQMSKQLSLLANGSE--LHISSVRYEDTGAYTCIAKNEVGVDEDISS 230 240 250 260 270 110 120 130 140 150 160 FLJ000 SDPLDIVITGKYKKPSLSTQVDPMMRLGEKLTLFCSSEISFDQYHLFRHGVAHGQWLSGG KIAA10 LFIEDSARKTLANILWREEGLSVGNMFYVFSDDGIIVIHPVDCEIQRHLKPTEKIFMSYE 280 290 300 310 320 330 >>FLJ00185 ( 824 res) sj01856 (824 aa) initn: 40 init1: 40 opt: 83 Z-score: 95.7 bits: 26.8 E(): 3.9 Smith-Waterman score: 83; 25.000% identity (54.167% similar) in 120 aa overlap (66-183:6-120) 40 50 60 70 80 90 FLJ000 ELAFDEFILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCFSHSRY ..::. : . : :. : . .. : FLJ001 MVQRMWAEAAGPAGGAEPLFPGSRRSRSVWDAVRL 10 20 30 100 110 120 130 140 150 FLJ000 EWSAPSDPLDIVITGKYK-KPSLSTQVDPMMRLGEKLTLFCSSEISFDQYHLFRHGVAHG : ..: : .:. . . :.: . ...::.: ::. . .: .:: .: FLJ001 EVGVP-DSCPVVLHSFTQLDPDLPRPESSTQEIGEELINGVIYSISLRKVQL-HHGGNKG 40 50 60 70 80 90 160 170 180 190 200 210 FLJ000 Q-WLSGGQRHREAFQANFSVGRATPVPGGTYRCYGSFNDSPYKPPVTRCNFTPQETLRVL : :: : ... :.. . . .. : .:: FLJ001 QRWL--GYENESALNL-YETCKVRTVKAGTLEKLVEHLVPAFQGSDLSYVTIFLCTYRAF 100 110 120 130 140 150 >>KIAA0208 ( 748 res) ha02713 (748 aa) initn: 54 init1: 54 opt: 81 Z-score: 93.7 bits: 26.3 E(): 5.1 Smith-Waterman score: 81; 25.843% identity (48.315% similar) in 89 aa overlap (68-149:353-441) 40 50 60 70 80 90 FLJ000 AFDEFILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCC--GCFSHSRY : : . ::.: . : . :::. : KIAA02 GRIEPGDMLLQVNEINFENMSNDDAVRVLREIVHKPGPITLTVAKCWDPSPRGCFTLPRS 330 340 350 360 370 380 100 110 120 130 140 150 FLJ000 EWSAPSDPLDIV-----ITGKYKKPSLSTQVDPMMRLGEKLTLFCSSEISFDQYHLFRHG : : :: : .:: . ..: ... . . ..: . .:..:: : KIAA02 EPIRPIDPAAWVSHTAAMTGTFPAYGMSPSLSTITSTSSSITSSIPDTERLDDFHLSIHS 390 400 410 420 430 440 160 170 180 190 200 210 FLJ000 VAHGQWLSGGQRHREAFQANFSVGRATPVPGGTYRCYGSFNDSPYKPPVTRCNFTPQETL KIAA02 DMAAIVKAMASPESGLEVRDRMWLKITIPNAFIGSDVVDWLYHNVEGFTDRREARKYASN 450 460 470 480 490 500 >>KIAA1894 ( 2977 res) ff08107 (2977 aa) initn: 100 init1: 50 opt: 85 Z-score: 93.1 bits: 28.2 E(): 5.5 Smith-Waterman score: 85; 25.926% identity (56.481% similar) in 108 aa overlap (2-100:472-573) 10 20 30 FLJ000 TPLSLLSGLFTKPSISAHPSSLVHAGARVSL ::. :.: :.:.: .... :..: KIAA18 GKGVQFNFHTFHLEDHHDYLLITENGSFTQPLARLTGSDLPPTINAG----LYGNFRAQL 450 460 470 480 490 40 50 60 70 80 FLJ000 RCHSE--LAFDEF-ILYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGP-VTPAHAGAYRCC : :. .... : : ..: ... . : :. . :..: .: . ...:: KIAA18 RFISDFSISYEGFNITFSEYNLEPCE--DPGIPQYGSRIGFNFGIGDTLTFSCSSGYRLE 500 510 520 530 540 550 90 100 110 120 130 140 FLJ000 G-----CFSHSRYEWSAPSDPLDIVITGKYKKPSLSTQVDPMMRLGEKLTLFCSSEISFD : :.. .: :::: KIAA18 GTSEIICLGGGRRVWSAPLPRCVAECGASATNNEGILLSPNYPLNYENNHECIYSIQVQA 560 570 580 590 600 610 >>FLJ00328 ( 238 res) sj02853 (238 aa) initn: 33 init1: 33 opt: 75 Z-score: 91.2 bits: 24.2 E(): 7 Smith-Waterman score: 75; 33.333% identity (60.606% similar) in 33 aa overlap (174-203:201-233) 150 160 170 180 190 200 FLJ000 YHLFRHGVAHGQWLSGGQRHREAFQANFSVGRATPVPGGTYRCYGSFNDS---PYKPPVT :.: :::. : : .. :.. :.. FLJ003 QGCSPAQTAAARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCETHTLPFQAPLA 180 190 200 210 220 230 210 220 FLJ000 RCNFTPQETLRVLLCHSQNPPLNLVSK ::. FLJ003 RCHGRFLC >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 71 init1: 45 opt: 77 Z-score: 90.0 bits: 25.3 E(): 8.2 Smith-Waterman score: 83; 26.000% identity (42.667% similar) in 150 aa overlap (74-202:57-200) 50 60 70 80 90 FLJ000 LYKEGHIQHSQQLDQGMEAGIHYVEAVFSMGPVTPAHAGAYRCCGCFSH-------SRYE : :.: : ::: : :: KIAA12 WCATCHFYRPPRCSHCSVCDNCVEVTGKFRGGVNPFTRG---CCGNVEHVLCSPLAPRYV 30 40 50 60 70 80 100 110 120 130 140 FLJ000 WSAPSDPLDIVITGKYKKPSLSTQVDPM-MRL---GEKLTLFCS-SEISFDQYHL--FRH : :: . . . .: : .. :. ..: : : : : :. :.:. . KIAA12 VEPPRLPLAVSLKPPFLRPELLDRAAPLKVKLSDNGLKAGLGRSKSKGSLDRLDEKPLDL 90 100 110 120 130 140 150 160 170 180 190 200 FLJ000 G------VAHGQWLSGGQRHRE-AFQANFSVGRATPVPGGTYRCYGSFNDSPYKPPVTRC : . : . : : : . .. .:: :..: . :. .: : : : : KIAA12 GPPLPPKIEAGTFSSDLQTPRPGSAESALSVQRTSPPTPAMYKFRPAF---PTGPKVPFC 150 160 170 180 190 200 210 220 FLJ000 NFTPQETLRVLLCHSQNPPLNLVSK KIAA12 GPGEQVPGPDSLTLGDDNIRSLDFVSEPSLDLPDYGPGGLHAAYPPSPPLSASDAFSGAL 210 220 230 240 250 260 >>KIAA1118 ( 1165 res) hk07196(revised) (1165 aa) initn: 77 init1: 48 opt: 79 Z-score: 89.7 bits: 26.2 E(): 8.4 Smith-Waterman score: 79; 35.556% identity (60.000% similar) in 45 aa overlap (159-201:467-509) 130 140 150 160 170 180 FLJ000 EKLTLFCSSEISFDQYHLFRHGVAHGQWLSGGQRHREAFQANFSVGRATPVPGGTYRCYG :: : .:..:: ..: . :. : :: KIAA11 STAERGPPENPRETRVPGMRQPAQELSPTPGGTAH-QALKAN-NAGGGLPAAGPGDRCLP 440 450 460 470 480 490 190 200 210 220 FLJ000 SFNDSP--YKPPVTRCNFTPQETLRVLLCHSQNPPLNLVSK . ..:: .:: : KIAA11 TSDSSPEPQQPPEDRTQDVLAQDAAGDNLEMMAPSRGSAKSRGPLEELLHTLQLLEKEPD 500 510 520 530 540 550 227 residues in 1 query sequences 2210767 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:32:28 2009 done: Fri Feb 27 10:32:29 2009 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]