# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00066.fasta.huge -Q ../query/FLJ00066.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00066, 162 aa vs ./tmplib.10216 library 2210832 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3730+/-0.00608; mu= 14.3142+/- 0.412 mean_var=213.4404+/-46.211, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.087788 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0865 ( 1900 res) hk06640y1 (1900) 127 28.2 2.5 KIAA2038 ( 917 res) pj01991 ( 917) 122 27.0 2.7 KIAA0522 ( 1555 res) hg01393 (1555) 124 27.7 2.9 KIAA1924 ( 613 res) hh01339 ( 613) 111 25.3 5.9 FLJ00197 ( 178 res) sj03274 ( 178) 104 23.5 6.1 FLJ00230 ( 414 res) sj06557 ( 414) 108 24.6 6.3 KIAA0079 ( 1102 res) ha03543 (1102) 113 26.0 6.5 KIAA1224 ( 997 res) fh02652 ( 997) 107 25.2 10 FLJ00159 ( 567 res) sh06608 ( 567) 103 24.2 11 FLJ00402 ( 137 res) sj07511 ( 137) 95 22.1 12 FLJ00355 ( 469 res) sh02302 ( 469) 101 23.8 12 FLJ00294 ( 681 res) sh03769 ( 681) 101 24.1 15 FLJ00420 ( 613 res) sj09535 ( 613) 100 23.9 15 KIAA0681 ( 538 res) hk02748 ( 538) 99 23.7 16 KIAA0691 ( 762 res) hk03735 ( 762) 100 24.1 17 KIAA1566 ( 1313 res) fh21445 (1313) 101 24.6 20 FLJ00096 ( 208 res) as00096 ( 208) 91 22.0 20 KIAA1002 ( 962 res) hk09859 ( 962) 99 24.1 21 KIAA1357 ( 836 res) fj01906 ( 836) 98 23.9 21 KIAA0910 ( 1315 res) hg02207s1 (1315) 100 24.5 22 FLJ00106 ( 379 res) as00106 ( 379) 93 22.7 23 KIAA1366 ( 550 res) fj02695 ( 550) 94 23.1 25 KIAA1297 ( 2242 res) fg03883 (2242) 101 25.0 26 KIAA0418 ( 989 res) hh00988 ( 989) 96 23.8 27 KIAA0023 ( 2111 res) ha00512 (2111) 100 24.9 27 FLJ00221 ( 298 res) sj06160 ( 298) 89 22.0 29 KIAA0269 ( 567 res) ha06751 ( 567) 92 22.8 30 KIAA0173 ( 1203 res) ha02346 (1203) 96 23.9 30 KIAA0401 ( 344 res) hg01095 ( 344) 89 22.1 31 FLJ00330 ( 246 res) sj03258 ( 246) 87 21.6 31 KIAA0945 ( 797 res) hj04760 ( 797) 93 23.2 32 KIAA1187 ( 813 res) fk03027 ( 813) 93 23.2 32 KIAA1965 ( 565 res) pj02601 ( 565) 91 22.7 32 FLJ00204 ( 573 res) sj04432 ( 573) 91 22.7 33 KIAA0900 ( 503 res) hk09606s1 ( 503) 90 22.5 34 KIAA0515 ( 670 res) hg00183 ( 670) 91 22.8 35 KIAA0307 ( 716 res) hg00066 ( 716) 91 22.9 36 KIAA1778 ( 341 res) pg00707 ( 341) 87 21.8 36 KIAA0755 ( 1093 res) hk04532 (1093) 93 23.5 37 KIAA1217 ( 1339 res) fh03001s1 (1339) 94 23.8 37 KIAA1375 ( 546 res) fj04426 ( 546) 89 22.4 38 KIAA1439 ( 561 res) hg01641b ( 561) 89 22.5 39 KIAA1810 ( 579 res) fk03376 ( 579) 89 22.5 39 KIAA1675 ( 1286 res) ae00102 (1286) 93 23.6 40 FLJ00163 ( 521 res) sh06933 ( 521) 88 22.3 41 KIAA0322 ( 1614 res) hg00462s1 (1614) 94 23.9 41 FLJ00307 ( 452 res) sh05777 ( 452) 87 22.0 41 KIAA1623 ( 1236 res) fj04650 (1236) 92 23.4 43 KIAA0512 ( 710 res) hf00239 ( 710) 89 22.6 43 KIAA0164 ( 929 res) ha02373 ( 929) 90 23.0 45 >>KIAA0865 ( 1900 res) hk06640y1 (1900 aa) initn: 157 init1: 62 opt: 127 Z-score: 99.4 bits: 28.2 E(): 2.5 Smith-Waterman score: 129; 28.082% identity (45.890% similar) in 146 aa overlap (48-162:1482-1623) 20 30 40 50 60 70 FLJ000 GLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAFLLHVLKPPQGAATPSGS :.: : :..:::: .:: .: KIAA08 PVYIEMLGHAARPDSPDPGESVYEEMKCCLPDDG--GPGAGSFLLHGASPPLLHRAPEDE 1460 1470 1480 1490 1500 80 90 100 110 120 FLJ000 SQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEA------------LHS-- . : :. .: :.:. :. : .. : . :.:: . :. :.. KIAA08 AAGPPGDACDIP-PPFPNLLPHRPPLLVFPPTPVTCSPASDESPLTPLEVKKLPVLETNL 1510 1520 1530 1540 1550 1560 130 140 150 160 FLJ000 --------SSIFQPWH----RTDGK-----GRAGFSASGTRGRPHLTPPSPVHQTG :: ..: . . :: : : :..:: :. : ::: : : KIAA08 KYPVQPEGSSPLSPQYSKSQKGDGDRPASPGLALFNGSG-RASPPSTPPPPPPPPGPPPA 1570 1580 1590 1600 1610 1620 KIAA08 PYRPCAHLAFPPEPAPVNAGKAGPSAEAPKVHPKPNSAPVAGPCSSFPKIPYSPVKATRA 1630 1640 1650 1660 1670 1680 >>KIAA2038 ( 917 res) pj01991 (917 aa) initn: 133 init1: 92 opt: 122 Z-score: 98.6 bits: 27.0 E(): 2.7 Smith-Waterman score: 127; 29.375% identity (47.500% similar) in 160 aa overlap (21-157:633-782) 10 20 30 40 FLJ000 SPPACLVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWF-CMVHF--AN : : : .:. : . .. : : .. KIAA20 CKVGESSSRPAPGPLPSTTQPSQASRALTEPLSGRAASLLGADTPVKTYHSCPPLFKPSH 610 620 630 640 650 660 50 60 70 80 90 FLJ000 PEDQFLGFQASAFLLHVLKPPQGAATPSGSSQG---------GPAMFSGLPVSPLPSSYP :. .: : : :.: .: : ::: : . ::. :: :: :.: KIAA20 PQKRFAPFGA-------LNPFSGPAYPSGPSAALSSGPRTTSGPVATSGPAYSPGPASPG 670 680 690 700 710 100 110 120 130 140 FLJ000 QNPSFIPPPSSCVSCSTHTGEALHSSSIFQPWHRTD-GKGRAGFS---------ASGTRG : : :::::. :. ..: . ...:. . :.: . : :: : KIAA20 QAYS-AAPPSSCAPSSSSSSEW--QEPVLEPFDPFELGQGSSPEPELLRSQEPRAVGTPG 720 730 740 750 760 770 150 160 FLJ000 R-PHLTPPSPVHQTG :.:.: .: KIAA20 PGPRLSPLGPSKAFEPEGLVLHQVPTPLSPAALQGPEAGGALFLTQGRLEGPPASPRDGA 780 790 800 810 820 830 >>KIAA0522 ( 1555 res) hg01393 (1555 aa) initn: 118 init1: 69 opt: 124 Z-score: 98.0 bits: 27.7 E(): 2.9 Smith-Waterman score: 124; 33.735% identity (53.012% similar) in 83 aa overlap (82-160:1351-1430) 60 70 80 90 100 110 FLJ000 FLGFQASAFLLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPL-PSSYPQNPSFIPPPSSC : . .:: : : :: :. :::.: KIAA05 LGVLPDGQSKLQALHAQYCQGPGPAPPPYLPPQQPSLPPPPQQPPPLPQLGSIPPPPASA 1330 1340 1350 1360 1370 1380 120 130 140 150 160 FLJ000 VSCSTHTGEALHSSSIFQPWHRTDGK-GRAGFSASGTRGRPHLTPPS--PVHQTG . : :. . : : : :. ::: ..: :.:...: . :.:: KIAA05 PPVGPHRHFHAHGP-VPGPQHYTLGRPGRAPRRGAG--GHPQFAPHGRHPLHQPTSPLPL 1390 1400 1410 1420 1430 KIAA05 YSPAPQHPPAHKQGPKHFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSP 1440 1450 1460 1470 1480 1490 >>KIAA1924 ( 613 res) hh01339 (613 aa) initn: 120 init1: 56 opt: 111 Z-score: 92.6 bits: 25.3 E(): 5.9 Smith-Waterman score: 111; 28.302% identity (53.774% similar) in 106 aa overlap (64-162:367-469) 40 50 60 70 80 90 FLJ000 SGCLSWFCMVHFANPEDQFLGFQASAFLLHVLKP-PQGAATPSGSSQGGPAMFSGLPV-- .: : :: : .::. :. :: :: KIAA19 DRYIHVRFPSESLKVPSKPIEKSCSPPEAVLLGPGPQPLPCPVASSK--PVRFSVSPVVQ 340 350 360 370 380 390 100 110 120 130 140 FLJ000 SPLPSSYPQNPSFIPPPSSCVSCSTHTGEALHSSSI----FQPWHRTDGKGRAGFSASGT .: :.. .. : : :: : . ..: .... ..:: . ... .:.:: KIAA19 TPSPTAQSGRAALAPRPFPEVSLSQERSDASNADGPGFHSLEPWAQLEASD-IHTAAAGT 400 410 420 430 440 450 150 160 FLJ000 RGRPHLTPPSPVHQTG . : . :: .:: KIAA19 HVLTHESAEVPVARTGSCEGFLPDPVLRLKGVIGFGGHGTRQALWTPDGAAVVYPCHAVI 460 470 480 490 500 510 >>FLJ00197 ( 178 res) sj03274 (178 aa) initn: 64 init1: 64 opt: 104 Z-score: 92.3 bits: 23.5 E(): 6.1 Smith-Waterman score: 104; 37.288% identity (64.407% similar) in 59 aa overlap (75-125:118-176) 50 60 70 80 90 100 FLJ000 FANPEDQFLGFQASAFLLHVLKPPQGAATPSGSSQ--GGPAMFSGLP-VSPLPSSYPQNP ::.:. :::: .: : .::. :. :. : FLJ001 NRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAP 90 100 110 120 130 140 110 120 130 140 150 FLJ000 SFIPPPSSCVSCST-----HTGEALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPS .. :: :: .: . :...:.:. FLJ001 GLRPPASSPKRNTTSLEGNRCGNVMHASASH 150 160 170 >>FLJ00230 ( 414 res) sj06557 (414 aa) initn: 102 init1: 58 opt: 108 Z-score: 92.0 bits: 24.6 E(): 6.3 Smith-Waterman score: 108; 31.169% identity (54.545% similar) in 77 aa overlap (68-139:126-196) 40 50 60 70 80 90 FLJ000 SWFCMVHFANPEDQFLGFQASAFLLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPS-- :: . .:. . : :.. ::.: :: FLJ002 DADVAKSTPKSTPVRPKSLFTSQPSGEAEAPQTTDSPTTKVQKDPSI---KPVTPSPSKL 100 110 120 130 140 150 100 110 120 130 140 150 FLJ000 -SYPQN--PSFIPPPSSCVSCSTHTGEALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHL . ::. :. .::: : .: :.:. :. : : . . :. FLJ002 VTSPQSEPPAPFPPPRS-TSSPYHAGNLLQRH--FTNWTKPTSPTRSTEAESVLHSEGSR 160 170 180 190 200 160 FLJ000 TPPSPVHQTG FLJ002 RAADAKPKRWISFKSFFRRRKTDEEDDKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFT 210 220 230 240 250 260 >>KIAA0079 ( 1102 res) ha03543 (1102 aa) initn: 132 init1: 61 opt: 113 Z-score: 91.8 bits: 26.0 E(): 6.5 Smith-Waterman score: 113; 28.431% identity (49.020% similar) in 102 aa overlap (68-160:191-287) 40 50 60 70 80 90 FLJ000 SWFCMVHFANPEDQFLGFQASAFLLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSY ::: : : ...:: :.. .: :. KIAA00 PPSSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQAQGHPGI-----QTPQRSAP 170 180 190 200 210 100 110 120 130 140 FLJ000 PQNPSFIPPPSSCVSCSTHTG-----EALHSSSIFQPWHRTDGKGR--AGFSASGTRGR- : :: :: :. . :: ... . :. :: : .. : . .: : KIAA00 SQASSFTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPGTQMTGPLGPL 220 230 240 250 260 270 150 160 FLJ000 -PHLTPPSPVHQTG : .: .: .: KIAA00 PPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAPTFGSQPGPPQPLPPKRLDPDAIP 280 290 300 310 320 330 >>KIAA1224 ( 997 res) fh02652 (997 aa) initn: 116 init1: 83 opt: 107 Z-score: 88.0 bits: 25.2 E(): 10 Smith-Waterman score: 107; 32.941% identity (52.941% similar) in 85 aa overlap (69-152:891-961) 40 50 60 70 80 90 FLJ000 WFCMVHFANPEDQFLGFQASAFLLHVLKPPQGAATPSGSSQGGPAMF-SGLPVSPLPSSY :: .: :::.:: . :: : : ::. KIAA12 MAALEKPLSHPMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPP-PSQP 870 880 890 900 910 100 110 120 130 140 150 FLJ000 PQNPSFIPPPSSCVSCSTHTGEALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSP :..: : :.: ::. :.: . .:.:: .... .: : KIAA12 PRQPPQAAP-------SSHP----HSDLTFNP--SSALEGQAGAQGASDMPEPSLDLLPE 920 930 940 950 960 160 FLJ000 VHQTG KIAA12 LTNPDELLSYLDPPDLPSNSNDDLLSLFENN 970 980 990 >>FLJ00159 ( 567 res) sh06608 (567 aa) initn: 93 init1: 64 opt: 103 Z-score: 87.4 bits: 24.2 E(): 11 Smith-Waterman score: 103; 29.487% identity (51.282% similar) in 78 aa overlap (36-107:147-223) 10 20 30 40 50 60 FLJ000 LVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQA-SAFLLHV : : .: ... ..:. ::: . FLJ001 PLGDHSRRYQRLSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGL 120 130 140 150 160 170 70 80 90 100 110 FLJ000 L-----KPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGE .:: .: . : :: . : : .::::: ..:. . :: FLJ001 TGRPSPSPPAHFLSPPAPFPGFPASLPGSP-APLPSSPTSSPAHLSPPQLTHLFDNDGTV 180 190 200 210 220 230 120 130 140 150 160 FLJ000 ALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG FLJ001 VFAIFMALWGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVV 240 250 260 270 280 290 >>FLJ00402 ( 137 res) sj07511 (137 aa) initn: 71 init1: 71 opt: 95 Z-score: 87.1 bits: 22.1 E(): 12 Smith-Waterman score: 95; 30.645% identity (50.000% similar) in 62 aa overlap (89-149:17-77) 60 70 80 90 100 110 FLJ000 AFLLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQN-PSFIPPPSSCVSCSTHT :. : : : : . :..:::: . .:. FLJ004 QVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGKFSHS 10 20 30 40 120 130 140 150 160 FLJ000 GEALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG . :. :. :: : . .: :: FLJ004 HSQTPAPRIWAQGPRSRDAGR-GPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREW 50 60 70 80 90 100 FLJ004 AKREHACISKKPARSLDFPVFALHPRSPSTHT 110 120 130 162 residues in 1 query sequences 2210832 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:32:33 2009 done: Fri Feb 27 10:32:33 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]