# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00081.fasta.nr -Q ../query/FLJ00081.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00081, 333 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826818 sequences Expectation_n fit: rho(ln(x))= 5.1256+/-0.000186; mu= 9.5039+/- 0.010 mean_var=66.1609+/-12.898, 0's: 30 Z-trim: 38 B-trim: 751 in 1/65 Lambda= 0.157679 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676418|dbj|BAB84861.1| FLJ00081 protein [Homo ( 333) 2217 513.0 3.3e-143 gi|51491295|emb|CAH18708.1| hypothetical protein [ ( 706) 2130 493.4 5.4e-137 gi|119589428|gb|EAW69022.1| XPA binding protein 2, ( 743) 2130 493.4 5.7e-137 gi|10566459|dbj|BAB15807.1| XAB2 [Homo sapiens] ( 855) 2130 493.5 6.4e-137 gi|25091548|sp|Q9HCS7.2|SYF1_HUMAN RecName: Full=P ( 855) 2130 493.5 6.4e-137 gi|109123174|ref|XP_001090436.1| PREDICTED: XPA bi ( 858) 2130 493.5 6.4e-137 gi|33339562|gb|AAQ14304.1|AF272147_1 crn-related p ( 852) 2129 493.2 7.4e-137 gi|149015558|gb|EDL74939.1| XPA binding protein 2, ( 750) 2126 492.5 1.1e-136 gi|74219245|dbj|BAE26756.1| unnamed protein produc ( 855) 2126 492.5 1.2e-136 gi|25091545|sp|Q9DCD2.1|SYF1_MOUSE RecName: Full=P ( 855) 2126 492.5 1.2e-136 gi|18204681|gb|AAH21341.1| XPA binding protein 2 [ ( 855) 2126 492.5 1.2e-136 gi|25091510|sp|Q99PK0.1|SYF1_RAT RecName: Full=Pre ( 855) 2126 492.5 1.2e-136 gi|133777470|gb|AAI14737.1| XPA binding protein 2 ( 855) 2115 490.0 6.8e-136 gi|73986874|ref|XP_542113.2| PREDICTED: similar to ( 852) 2109 488.7 1.7e-135 gi|110665580|gb|ABG81436.1| XPA binding protein 2 ( 855) 2104 487.5 3.8e-135 gi|194212558|ref|XP_001916974.1| PREDICTED: simila ( 765) 2103 487.3 4.1e-135 gi|14250630|gb|AAH08778.1| XAB2 protein [Homo sapi ( 635) 2082 482.5 9.7e-134 gi|126323885|ref|XP_001377412.1| PREDICTED: simila ( 862) 2054 476.2 1e-131 gi|73986876|ref|XP_868258.1| PREDICTED: similar to ( 854) 2028 470.3 6.1e-130 gi|32451897|gb|AAH54579.1| XPA binding protein 2 [ ( 849) 1926 447.0 5.9e-123 gi|94732244|emb|CAK05397.1| XPA binding protein 2 ( 851) 1925 446.8 6.9e-123 gi|34783757|gb|AAH56771.1| Xab2 protein [Danio rer ( 851) 1917 445.0 2.4e-122 gi|197246298|gb|AAI68421.1| Unknown (protein for M ( 839) 1769 411.3 3.3e-112 gi|117558145|gb|AAI27433.1| LOC100036801 protein [ ( 838) 1767 410.9 4.5e-112 gi|119589429|gb|EAW69023.1| XPA binding protein 2, ( 256) 1684 391.7 8.3e-107 gi|115935975|ref|XP_001184881.1| PREDICTED: hypoth ( 543) 1630 379.6 7.6e-103 gi|190588088|gb|EDV28130.1| hypothetical protein T ( 833) 1613 375.8 1.6e-101 gi|73986880|ref|XP_868264.1| PREDICTED: similar to ( 832) 1601 373.1 1e-100 gi|210084389|gb|EEA32918.1| hypothetical protein B ( 856) 1587 369.9 9.7e-100 gi|215509303|gb|EEC18756.1| pre-mRNA splicing fact ( 850) 1571 366.3 1.2e-98 gi|212517889|gb|EEB19718.1| XPA-binding protein, p ( 858) 1536 358.3 3e-96 gi|66554055|ref|XP_395622.2| PREDICTED: similar to ( 836) 1527 356.3 1.2e-95 gi|91092544|ref|XP_968085.1| PREDICTED: similar to ( 857) 1524 355.6 2e-95 gi|194113786|gb|EDW35829.1| GL17467 [Drosophila pe ( 848) 1491 348.1 3.6e-93 gi|7303287|gb|AAF58348.1| CG6197 [Drosophila melan ( 883) 1491 348.1 3.7e-93 gi|54636792|gb|EAL26195.1| GA19432 [Drosophila pse ( 884) 1491 348.1 3.7e-93 gi|194176979|gb|EDW90590.1| GE12556 [Drosophila ya ( 882) 1487 347.2 7e-93 gi|156553931|ref|XP_001602137.1| PREDICTED: simila ( 841) 1485 346.7 9.3e-93 gi|167863389|gb|EDS26772.1| XPA-binding protein 2 ( 862) 1485 346.7 9.4e-93 gi|190658925|gb|EDV56138.1| GG20394 [Drosophila er ( 882) 1484 346.5 1.1e-92 gi|190622408|gb|EDV37932.1| GF13706 [Drosophila an ( 882) 1484 346.5 1.1e-92 gi|193911396|gb|EDW10263.1| GI18628 [Drosophila mo ( 870) 1481 345.8 1.8e-92 gi|193901832|gb|EDW00699.1| GH21027 [Drosophila gr ( 891) 1475 344.5 4.7e-92 gi|194160091|gb|EDW74992.1| GK15972 [Drosophila wi ( 886) 1472 343.8 7.5e-92 gi|194144321|gb|EDW60717.1| GJ21637 [Drosophila vi ( 884) 1469 343.1 1.2e-91 gi|193693020|ref|XP_001951071.1| PREDICTED: simila ( 851) 1370 320.6 7e-85 gi|221121072|ref|XP_002157791.1| PREDICTED: simila ( 503) 1347 315.2 1.7e-83 gi|158594635|gb|EDP33219.1| XPA-binding protein 2, ( 871) 1326 310.6 7.4e-82 gi|157327878|emb|CAO16590.1| unnamed protein produ ( 888) 1321 309.4 1.6e-81 gi|163772728|gb|EDQ86376.1| predicted protein [Mon ( 926) 1307 306.3 1.5e-80 >>gi|18676418|dbj|BAB84861.1| FLJ00081 protein [Homo sap (333 aa) initn: 2217 init1: 2217 opt: 2217 Z-score: 2727.3 bits: 513.0 E(): 3.3e-143 Smith-Waterman score: 2217; 100.000% identity (100.000% similar) in 333 aa overlap (1-333:1-333) 10 20 30 40 50 60 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 GHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLEL 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 RLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFK 130 140 150 160 170 180 190 200 210 220 230 240 FLJ000 ATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENY 190 200 210 220 230 240 250 260 270 280 290 300 FLJ000 DEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 DEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDR 250 260 270 280 290 300 310 320 330 FLJ000 ILDLRIATPQIVINYAMFLEEHKYFEESFKVRG ::::::::::::::::::::::::::::::::: gi|186 ILDLRIATPQIVINYAMFLEEHKYFEESFKVRG 310 320 330 >>gi|51491295|emb|CAH18708.1| hypothetical protein [Homo (706 aa) initn: 2129 init1: 2129 opt: 2130 Z-score: 2615.6 bits: 493.4 E(): 5.4e-137 Smith-Waterman score: 2130; 99.080% identity (99.387% similar) in 326 aa overlap (10-333:70-395) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|514 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 40 50 60 70 80 90 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 100 110 120 130 140 150 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 160 170 180 190 200 210 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 220 230 240 250 260 270 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|514 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 280 290 300 310 320 330 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|514 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 340 350 360 370 380 390 gi|514 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 400 410 420 430 440 450 >>gi|119589428|gb|EAW69022.1| XPA binding protein 2, iso (743 aa) initn: 2129 init1: 2129 opt: 2130 Z-score: 2615.3 bits: 493.4 E(): 5.7e-137 Smith-Waterman score: 2130; 99.080% identity (99.387% similar) in 326 aa overlap (10-333:219-544) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|119 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|119 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 490 500 510 520 530 540 gi|119 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 >>gi|10566459|dbj|BAB15807.1| XAB2 [Homo sapiens] (855 aa) initn: 2129 init1: 2129 opt: 2130 Z-score: 2614.4 bits: 493.5 E(): 6.4e-137 Smith-Waterman score: 2130; 99.080% identity (99.387% similar) in 326 aa overlap (10-333:219-544) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|105 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|105 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|105 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|105 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|105 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|105 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 490 500 510 520 530 540 gi|105 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 >>gi|25091548|sp|Q9HCS7.2|SYF1_HUMAN RecName: Full=Pre-m (855 aa) initn: 2129 init1: 2129 opt: 2130 Z-score: 2614.4 bits: 493.5 E(): 6.4e-137 Smith-Waterman score: 2130; 99.080% identity (99.387% similar) in 326 aa overlap (10-333:219-544) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|250 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|250 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 490 500 510 520 530 540 gi|250 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 >>gi|109123174|ref|XP_001090436.1| PREDICTED: XPA bindin (858 aa) initn: 2129 init1: 2129 opt: 2130 Z-score: 2614.4 bits: 493.5 E(): 6.4e-137 Smith-Waterman score: 2130; 99.080% identity (99.387% similar) in 326 aa overlap (10-333:222-547) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|109 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 200 210 220 230 240 250 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 260 270 280 290 300 310 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 320 330 340 350 360 370 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 380 390 400 410 420 430 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 440 450 460 470 480 490 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|109 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 500 510 520 530 540 550 gi|109 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 560 570 580 590 600 610 >>gi|33339562|gb|AAQ14304.1|AF272147_1 crn-related prote (852 aa) initn: 2129 init1: 2129 opt: 2129 Z-score: 2613.2 bits: 493.2 E(): 7.4e-137 Smith-Waterman score: 2129; 100.000% identity (100.000% similar) in 321 aa overlap (10-330:216-536) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|333 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKVRG ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKPYERGISLF 490 500 510 520 530 540 gi|333 KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 >>gi|149015558|gb|EDL74939.1| XPA binding protein 2, iso (750 aa) initn: 2125 init1: 2125 opt: 2126 Z-score: 2610.3 bits: 492.5 E(): 1.1e-136 Smith-Waterman score: 2126; 98.773% identity (99.387% similar) in 326 aa overlap (10-333:114-439) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|149 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 90 100 110 120 130 140 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 150 160 170 180 190 200 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 210 220 230 240 250 260 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 270 280 290 300 310 320 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|149 VDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 330 340 350 360 370 380 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|149 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 390 400 410 420 430 440 gi|149 KWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 450 460 470 480 490 500 >>gi|74219245|dbj|BAE26756.1| unnamed protein product [M (855 aa) initn: 2125 init1: 2125 opt: 2126 Z-score: 2609.5 bits: 492.5 E(): 1.2e-136 Smith-Waterman score: 2126; 98.773% identity (99.387% similar) in 326 aa overlap (10-333:219-544) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|742 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|742 VDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|742 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 490 500 510 520 530 540 gi|742 KWPNVSDICSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 >>gi|25091545|sp|Q9DCD2.1|SYF1_MOUSE RecName: Full=Pre-m (855 aa) initn: 2125 init1: 2125 opt: 2126 Z-score: 2609.5 bits: 492.5 E(): 1.2e-136 Smith-Waterman score: 2126; 98.773% identity (99.387% similar) in 326 aa overlap (10-333:219-544) 10 20 30 FLJ000 DSPPLPHALQLWHELCDLISQNPDKVQSLNVDAIIRGGL :::::::::::::::::::::::::::::: gi|250 SSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGL 190 200 210 220 230 240 40 50 60 70 80 90 FLJ000 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIA 250 260 270 280 290 300 100 110 120 130 140 150 FLJ000 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 AKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQ 310 320 330 340 350 360 160 170 180 190 200 210 FLJ000 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 GRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ 370 380 390 400 410 420 220 230 240 250 260 270 FLJ000 VDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|250 VDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ000 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKV--RG :::::::::::::::::::::::::::::::::::::::::::::::::::. :: gi|250 MLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF 490 500 510 520 530 540 gi|250 KWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGL 550 560 570 580 590 600 333 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 20:23:35 2009 done: Fri Feb 27 20:29:24 2009 Total Scan time: 802.970 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]