# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00083.fasta.huge -Q ../query/FLJ00083.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00083, 216 aa vs ./tmplib.10216 library 2210778 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.5545+/-0.00424; mu= 21.6349+/- 0.287 mean_var=101.3838+/-21.717, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.127377 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1662 ( 1653 res) fj03879s1 (1653) 98 28.5 2.4 KIAA1865 ( 723 res) fj14303 ( 723) 94 27.1 2.7 KIAA0304 ( 2415 res) af07172 (2415) 95 28.2 4.1 KIAA1390 ( 505 res) hh08938 ( 505) 89 25.9 4.3 FLJ00063 ( 133 res) as00063 ( 133) 84 23.9 4.5 FLJ00019 ( 732 res) as00019 ( 732) 90 26.4 4.5 FLJ00236 ( 702 res) sj07289 ( 702) 88 26.0 5.7 KIAA1669 ( 1405 res) fh18133 (1405) 90 26.9 6.1 KIAA2036 ( 1322 res) pf06513 (1322) 89 26.6 6.7 FLJ00011 ( 394 res) as00011 ( 394) 84 24.8 7.3 FLJ00091 ( 170 res) as00091 ( 170) 81 23.6 7.3 KIAA2020 ( 572 res) ph01249 ( 572) 85 25.2 7.6 FLJ00283 ( 500 res) sh02088 ( 500) 84 25.0 8.2 KIAA0124 ( 682 res) ha01534 ( 682) 85 25.4 8.3 FLJ00332 ( 201 res) sj03652 ( 201) 80 23.5 9 KIAA0199 ( 1283 res) ha03150s1 (1283) 86 26.1 9.7 KIAA1770 ( 1307 res) pj01645(revised) (1307) 86 26.1 9.8 FLJ00053 ( 443 res) as00053 ( 443) 82 24.5 10 FLJ00357 ( 628 res) sh02980 ( 628) 83 25.0 10 KIAA0522 ( 1555 res) hg01393 (1555) 86 26.2 11 KIAA1931 ( 514 res) fj14393 ( 514) 82 24.6 11 KIAA1538 ( 1029 res) fg06773 (1029) 83 25.3 13 KIAA0339 ( 1709 res) hg01304(revised) (1709) 83 25.7 16 FLJ00252 ( 819 res) sj09394 ( 819) 80 24.6 17 KIAA1671 ( 364 res) hh02164 ( 364) 77 23.4 17 KIAA0674 ( 1234 res) hk02519 (1234) 81 25.1 18 FLJ00201 ( 705 res) sj04110 ( 705) 79 24.3 18 KIAA1539 ( 543 res) fg02356 ( 543) 77 23.7 21 KIAA0008 ( 876 res) ha00171s2 ( 876) 78 24.3 23 KIAA1703 ( 1165 res) fj16891 (1165) 79 24.7 23 KIAA0279 ( 2854 res) ff05612 (2854) 82 26.0 23 KIAA1093 ( 1727 res) fh18956 (1727) 80 25.2 24 FLJ00248 ( 501 res) sj08681 ( 501) 75 23.3 26 KIAA1311 ( 889 res) fh11512 ( 889) 77 24.1 26 KIAA1869 ( 935 res) hh01800 ( 935) 77 24.2 26 FLJ00090 ( 770 res) as00090 ( 770) 76 23.8 27 KIAA1650 ( 797 res) hk02174 ( 797) 76 23.9 28 KIAA1197 ( 1487 res) fg01844 (1487) 78 24.7 29 FLJ00271 ( 211 res) sh00109 ( 211) 71 21.9 29 FLJ00369 ( 700 res) sh06511 ( 700) 75 23.6 30 KIAA1128 ( 588 res) hg03213 ( 588) 74 23.2 31 KIAA1940 ( 821 res) ah04227 ( 821) 75 23.7 32 FLJ00378 ( 855 res) sj00210 ( 855) 75 23.7 33 KIAA1831 ( 663 res) hk00543 ( 663) 74 23.3 33 KIAA0358 ( 1584 res) hh00017 (1584) 77 24.6 33 KIAA0689 ( 547 res) hk03417 ( 547) 73 23.0 34 KIAA1741 ( 1777 res) fh23254 (1777) 77 24.7 35 KIAA0945 ( 797 res) hj04760 ( 797) 74 23.5 36 KIAA1246 ( 832 res) hh00149a ( 832) 74 23.5 36 FLJ00275 ( 382 res) sh00566 ( 382) 71 22.4 38 >>KIAA1662 ( 1653 res) fj03879s1 (1653 aa) initn: 71 init1: 71 opt: 98 Z-score: 99.7 bits: 28.5 E(): 2.4 Smith-Waterman score: 98; 37.931% identity (53.448% similar) in 58 aa overlap (156-211:710-762) 130 140 150 160 170 180 FLJ000 CDVVAAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPMVH--HPWVMAS . ::. :.. ::: . .: : . : KIAA16 SPLPPRTSARTPERELRTQRPLESGQAGPRQPLGVWQSQEEPPGSQGPHRHLERSWSSQE 680 690 700 710 720 730 190 200 210 FLJ000 GGDRAGPGDDKGEELREPSPLGLVRIPERPGYL :: ::: : ::: :: .. :: KIAA16 GG--LGPGGWWG--CGEPS-LGAAKAPEGAWGGTSREYKESWGQPEAWEEKPTHELPREL 740 750 760 770 780 790 >>KIAA1865 ( 723 res) fj14303 (723 aa) initn: 106 init1: 56 opt: 94 Z-score: 98.6 bits: 27.1 E(): 2.7 Smith-Waterman score: 94; 28.070% identity (46.491% similar) in 114 aa overlap (98-205:420-531) 70 80 90 100 110 120 FLJ000 DNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGLLTLMGKGVPAPL---AFAPGADG :. :. : .:. : . ::.: KIAA18 EKKHGSGDWRLLGDLLPEAVRFFKEGVPGADMLPQPYLDASCPMLPTALVSLSRAPSAPP 390 400 410 420 430 440 130 140 150 160 170 180 FLJ000 GCDVV--AAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAW-APMVHHPWVM : .. :: : :. . :. . .: : .:. :: . : : : . . . KIAA18 GTGALPPAAPSGRGAAASLRKRKASPEP--PDSAEGALKLGEEQQRQQWMANQSEALKLT 450 460 470 480 490 500 190 200 210 FLJ000 ASGGDRAGPGDDKGEELREPSPLGLVRIPERPGYL :.: :.:: : : ::: KIAA18 MSAGGFAAPGHAAGGPPPPPPPLGPHSNRTTPPESAPQNGPSPMAALMSVADTLGTAHSP 510 520 530 540 550 560 >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 112 init1: 83 opt: 95 Z-score: 95.4 bits: 28.2 E(): 4.1 Smith-Waterman score: 95; 41.304% identity (67.391% similar) in 46 aa overlap (155-198:1770-1813) 130 140 150 160 170 180 FLJ000 GCDVVAAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQ--GEGEPPQAWAPMVHHPWVMA ::: ..:: :.: ::.. : : . :.. KIAA03 TVVSAPGLAPSATPGAPRIEQLDGVDDGTDSEAEAVQQPRGQGTPPSG--PGVVRAGVLG 1740 1750 1760 1770 1780 1790 190 200 210 FLJ000 SGGDRAGPGDDKGEELREPSPLGLVRIPERPGYL ..:::: : .: :. KIAA03 AAGDRARPPEDLPSEIVDFVLKNLGGPGDGGAGPREESLPPAPPLANGSQPSQGLTASPA 1800 1810 1820 1830 1840 1850 >>KIAA1390 ( 505 res) hh08938 (505 aa) initn: 129 init1: 74 opt: 89 Z-score: 94.9 bits: 25.9 E(): 4.3 Smith-Waterman score: 89; 28.571% identity (47.253% similar) in 91 aa overlap (116-201:406-496) 90 100 110 120 130 140 FLJ000 GCHTVLSDAKSLDFEPEGLLTLMGKGVPAPLAFAPGADGGCDVVAAELGVGTEGCL---- :. .:::.:: .: : . . KIAA13 LQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPEKQLQVDQDYLIALSL 380 390 400 410 420 430 150 160 170 180 190 200 FLJ000 -QTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPMVHHPWVMASGGDRAGPGDDKGEELRE : ::.. . : ::: : . :: :. . :.. : : : ::. .. KIAA13 QQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQR 440 450 460 470 480 490 210 FLJ000 PSPLGLVRIPERPGYL : KIAA13 PKHESDCILL 500 >>FLJ00063 ( 133 res) as00063 (133 aa) initn: 44 init1: 44 opt: 84 Z-score: 94.7 bits: 23.9 E(): 4.5 Smith-Waterman score: 84; 25.243% identity (50.485% similar) in 103 aa overlap (35-136:28-121) 10 20 30 40 50 60 FLJ000 QSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRAVWLGGKTCSGCFQNQEDFLTLLRMTR ::. : : ..:.. :.. :. FLJ000 QMHLAGIWVIKKNNLIFLFFLYPPAIHPLEYSWSPPK------RGQRSQKTMVDMSA 10 20 30 40 50 70 80 90 100 110 120 FLJ000 VRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGL-LTLMGKGVPAPLAFAPGAD :: .. . :. ... .: : . . .:: ..: .: :. . : : FLJ000 VRATQAASQPLLLDVCFLLCLSCCEVKAPNTERCARDKGLQVALPTRGRPGEAGRCSGCD 60 70 80 90 100 110 130 140 150 160 170 180 FLJ000 GGCDVVAAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPMVHHPWVMAS ::: . .:::: FLJ000 GGC---VCKLGVGQPWVSVTVACVI 120 130 >>FLJ00019 ( 732 res) as00019 (732 aa) initn: 59 init1: 59 opt: 90 Z-score: 94.6 bits: 26.4 E(): 4.5 Smith-Waterman score: 95; 27.149% identity (45.249% similar) in 221 aa overlap (17-204:283-493) 10 20 30 40 FLJ000 FYLSQSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRAVWLG---- ::: . :.:. ::. : ::: : FLJ000 LATAPDAALTLALVRALLELSRGCSRACAEQLSLGGGLGPL-VSLASHPKRAVREGTILI 260 270 280 290 300 310 50 60 70 80 90 FLJ000 -GKTCS-GCFQ----NQEDFLTLLRMTRVRDDNTHQLPVKVSLGTTNTCG-CHTVLSDAK .. :. : .. : .:. : : : . :.. . . .: :. ... :. FLJ000 LANLCAQGLIRPALGNAGGVEVLVDELRQRRDPNGASPTSQQPLVRAVCLLCREAINRAR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ000 SLDFEPEGLLTLMGKGV-PAPLAFAPGADGGCDVVAAELG----VGTEGCLQTCRLTPLS : :: ::: : :. : .::: .: .:. : ::. :.:: FLJ000 LRD--AGGLDLLMGLLRDPRASAWHP------RIVAALVGFLYDTGALGRLQALGLVPLL 380 390 400 410 420 160 170 180 190 FLJ000 VLQHSEALGLQQGEGEPPQAWA-PMVHHP-------------WVMASGGDRAGPGD---D . : : .. ::. .: : . : :.. : : .:: : : FLJ000 AGQLCGEAGEEEEEGREAASWDFPEERTPERAQGGSFRSLRSWLI-SEGYATGPDDISPD 430 440 450 460 470 480 200 210 FLJ000 KGEELREPSPLGLVRIPERPGYL . : : :. FLJ000 WSPEQCPPEPMEPASPAPTPTSLRAPRTQRTPGRSPAAAIEEPWGREGPALLLLSRFSQA 490 500 510 520 530 540 >>FLJ00236 ( 702 res) sj07289 (702 aa) initn: 63 init1: 63 opt: 88 Z-score: 92.8 bits: 26.0 E(): 5.7 Smith-Waterman score: 88; 36.170% identity (63.830% similar) in 47 aa overlap (15-61:131-175) 10 20 30 40 FLJ000 FYLSQSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRAVWLGGK ..:: .. :.: :. :: : ::::. : FLJ002 NSAGHRESRAARVSIQEPQDYTEPVELLAVRIQLENVTLLNP-DPAEGPKPRPAVWLSWK 110 120 130 140 150 50 60 70 80 90 100 FLJ000 TCSGCFQNQEDFLTLLRMTRVRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGL . :: ... .:.: FLJ002 V-SGPAAPAQSYTALFRTQTAPGGQGAPWAEELLAGWQSAELGGLHWGQDYEFKVRPSSG 160 170 180 190 200 210 >>KIAA1669 ( 1405 res) fh18133 (1405 aa) initn: 146 init1: 56 opt: 90 Z-score: 92.3 bits: 26.9 E(): 6.1 Smith-Waterman score: 90; 32.143% identity (52.381% similar) in 84 aa overlap (91-168:777-857) 70 80 90 100 110 120 FLJ000 RMTRVRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGLLTLMGKGVPAPLAFAP .:.:.. . :. ::.. . : .: : KIAA16 LWRIQRHRLESARLRFLLEDEKHIQEMLKAVSEAHQPQEPPDVLLSVHPQ-VTSPGPEHP 750 760 770 780 790 800 130 140 150 160 170 FLJ000 GADGGCDVVAAEL------GVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPM . ::: .:: : . : : : ::.: . . ::::.:: : KIAA16 EGGQGCDSGSAEQHSPAWDGWNRPGLLTPQPLKPLAV--GAGGRGLQQAEGARPFSDSLS 810 820 830 840 850 860 180 190 200 210 FLJ000 VHHPWVMASGGDRAGPGDDKGEELREPSPLGLVRIPERPGYL KIAA16 IGDFLPVGPGAEPSVQTGMVPLLEVALQTINLDLPPSAPGEAPAAASTQPSRPQEYDFST 870 880 890 900 910 920 >>KIAA2036 ( 1322 res) pf06513 (1322 aa) initn: 72 init1: 49 opt: 89 Z-score: 91.5 bits: 26.6 E(): 6.7 Smith-Waterman score: 89; 30.709% identity (48.031% similar) in 127 aa overlap (103-214:623-742) 80 90 100 110 120 FLJ000 LPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGLLTLMGK---GVPAPLAFAP-GADGGCDV :: .: : :.: : : :. : .. KIAA20 GVAPGLCLTPEQLCDGIPDCPQGEDELDCGGLPALGGPNRTGLPCPEYTCPNGTCIGFQL 600 610 620 630 640 650 130 140 150 160 170 FLJ000 VAAELGVGTEGCL---QTCRLTPL--SVLQHSEALGLQQGEGEPPQ-----AWAPMVHHP : . .: : . . .: :::: .: . . : : :. ::.: : KIAA20 VRVGVGGGGGSAMLPPSTRALTPLPPQVCDGQPDCGRPGQVGPSPEEQGCGAWGPW--SP 660 670 680 690 700 710 180 190 200 210 FLJ000 WVMASGGDRAGP-GDDKGEELREPSPLGLVRIPERPGYL : : :: :. .. :. :::::. . . :: KIAA20 WGPCS--RTCGPWGQGRS---RRCSPLGLLVLQNCPGPEHQSQACFTAACPVDGEWSTWS 720 730 740 750 760 KIAA20 PWSVCSEPCRGTMTRQRQCHSPQNGGRTCAALPGGLHSTRQTKPCPQDGCPNATCSGELM 770 780 790 800 810 820 >>FLJ00011 ( 394 res) as00011 (394 aa) initn: 77 init1: 77 opt: 84 Z-score: 90.8 bits: 24.8 E(): 7.3 Smith-Waterman score: 84; 42.424% identity (57.576% similar) in 33 aa overlap (9-41:82-112) 10 20 30 FLJ000 FYLSQSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRA : :. :.. ::: : : ..: ::: FLJ000 LRERLGALKVSPSASAPRHPHKGIPPLQDVPVDAFTPLRI--ACTPPPQLPPVAPRPLRP 60 70 80 90 100 40 50 60 70 80 90 FLJ000 VWLGGKTCSGCFQNQEDFLTLLRMTRVRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLD :: FLJ000 NWLLTEPLSREHPPQSQIRGRAQSRSRSRSRSRSRSSRGQGKSPGRRSPSPVPTPAPSMT 110 120 130 140 150 160 216 residues in 1 query sequences 2210778 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:32:51 2009 done: Fri Feb 27 10:32:51 2009 Total Scan time: 0.380 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]