# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00083.fasta.nr -Q ../query/FLJ00083.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00083, 216 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7827213 sequences
  Expectation_n fit: rho(ln(x))= 5.0136+/-0.000184; mu= 9.6529+/- 0.010
 mean_var=68.1595+/-13.189, 0's: 36 Z-trim: 39  B-trim: 0 in 0/66
 Lambda= 0.155350

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|10440482|dbj|BAB15774.1| FLJ00083 protein [Homo ( 216) 1530 351.0 7.7e-95


>>gi|10440482|dbj|BAB15774.1| FLJ00083 protein [Homo sap  (216 aa)
 initn: 1530 init1: 1530 opt: 1530  Z-score: 1858.9  bits: 351.0 E(): 7.7e-95
Smith-Waterman score: 1530;  100.000% identity (100.000% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
FLJ000 FYLSQSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRAVWLGGKTCSGCFQNQEDFLTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 FYLSQSHCPPGLFSKLQLSHACTLSPVGPSLGPDPLRAVWLGGKTCSGCFQNQEDFLTLL
               10        20        30        40        50        60

               70        80        90       100       110       120
FLJ000 RMTRVRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGLLTLMGKGVPAPLAFAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 RMTRVRDDNTHQLPVKVSLGTTNTCGCHTVLSDAKSLDFEPEGLLTLMGKGVPAPLAFAP
               70        80        90       100       110       120

              130       140       150       160       170       180
FLJ000 GADGGCDVVAAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPMVHHPWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 GADGGCDVVAAELGVGTEGCLQTCRLTPLSVLQHSEALGLQQGEGEPPQAWAPMVHHPWV
              130       140       150       160       170       180

              190       200       210      
FLJ000 MASGGDRAGPGDDKGEELREPSPLGLVRIPERPGYL
       ::::::::::::::::::::::::::::::::::::
gi|104 MASGGDRAGPGDDKGEELREPSPLGLVRIPERPGYL
              190       200       210      




216 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 20:33:18 2009 done: Fri Feb 27 20:38:09 2009
 Total Scan time: 687.160 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]