# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00096.fasta.nr -Q ../query/FLJ00096.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00096, 208 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7816758 sequences Expectation_n fit: rho(ln(x))= 5.7561+/-0.000202; mu= 6.6421+/- 0.011 mean_var=122.6285+/-23.092, 0's: 43 Z-trim: 49 B-trim: 0 in 0/66 Lambda= 0.115819 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440498|dbj|BAB15782.1| FLJ00096 protein [Homo ( 208) 1479 257.1 1.3e-66 gi|119574967|gb|EAW54582.1| hCG1781322 [Homo sapie ( 172) 1241 217.3 1.1e-54 >>gi|10440498|dbj|BAB15782.1| FLJ00096 protein [Homo sap (208 aa) initn: 1479 init1: 1479 opt: 1479 Z-score: 1351.8 bits: 257.1 E(): 1.3e-66 Smith-Waterman score: 1479; 100.000% identity (100.000% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 FLJ000 ITPTPPPPPRSREKESPRVAARVVVPVRSRERVLTSMGLTGVEGRGCRYSGCKMWPVRAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 ITPTPPPPPRSREKESPRVAARVVVPVRSRERVLTSMGLTGVEGRGCRYSGCKMWPVRAV 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 SIFSTLIGRRLAWRRGSEGGTACTKGLVLPAGDEPGPGPELFPESALVQAGSAPPPPPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 SIFSTLIGRRLAWRRGSEGGTACTKGLVLPAGDEPGPGPELFPESALVQAGSAPPPPPPP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 PPPPLCLLLLRAESEGAVLMTHPRAWEQRGGGLREARGGLGAARSPREQEQREEEELARR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PPPPLCLLLLRAESEGAVLMTHPRAWEQRGGGLREARGGLGAARSPREQEQREEEELARR 130 140 150 160 170 180 190 200 FLJ000 PRAPSAPSRRLEPDASNPGWPAAEPWPG :::::::::::::::::::::::::::: gi|104 PRAPSAPSRRLEPDASNPGWPAAEPWPG 190 200 >>gi|119574967|gb|EAW54582.1| hCG1781322 [Homo sapiens] (172 aa) initn: 1241 init1: 1241 opt: 1241 Z-score: 1137.9 bits: 217.3 E(): 1.1e-54 Smith-Waterman score: 1241; 100.000% identity (100.000% similar) in 172 aa overlap (37-208:1-172) 10 20 30 40 50 60 FLJ000 PPPRSREKESPRVAARVVVPVRSRERVLTSMGLTGVEGRGCRYSGCKMWPVRAVSIFSTL :::::::::::::::::::::::::::::: gi|119 MGLTGVEGRGCRYSGCKMWPVRAVSIFSTL 10 20 30 70 80 90 100 110 120 FLJ000 IGRRLAWRRGSEGGTACTKGLVLPAGDEPGPGPELFPESALVQAGSAPPPPPPPPPPPLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IGRRLAWRRGSEGGTACTKGLVLPAGDEPGPGPELFPESALVQAGSAPPPPPPPPPPPLC 40 50 60 70 80 90 130 140 150 160 170 180 FLJ000 LLLLRAESEGAVLMTHPRAWEQRGGGLREARGGLGAARSPREQEQREEEELARRPRAPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLLLRAESEGAVLMTHPRAWEQRGGGLREARGGLGAARSPREQEQREEEELARRPRAPSA 100 110 120 130 140 150 190 200 FLJ000 PSRRLEPDASNPGWPAAEPWPG :::::::::::::::::::::: gi|119 PSRRLEPDASNPGWPAAEPWPG 160 170 208 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 22:06:24 2009 done: Fri Feb 27 22:11:10 2009 Total Scan time: 678.500 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]