# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00104.fasta.huge -Q ../query/FLJ00104.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00104, 287 aa vs ./tmplib.10216 library 2210707 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.7864+/-0.00638; mu= 15.0510+/- 0.430 mean_var=232.0341+/-51.601, 0's: 0 Z-trim: 0 B-trim: 11 in 1/39 Lambda= 0.084197 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00283 ( 500 res) sh02088 ( 500) 136 28.3 1.1 FLJ00053 ( 443 res) as00053 ( 443) 134 28.0 1.2 KIAA0927 ( 1001 res) hg03734 (1001) 133 28.4 1.9 KIAA1249 ( 949 res) hh04184 ( 949) 128 27.8 2.9 KIAA1093 ( 1727 res) fh18956 (1727) 126 28.0 4.6 KIAA2013 ( 730 res) bm04064 ( 730) 115 26.0 7.6 KIAA1816 ( 1162 res) fh16716 (1162) 117 26.6 8 KIAA1717 ( 420 res) pf00208 ( 420) 111 25.1 8.1 FLJ00248 ( 501 res) sj08681 ( 501) 112 25.4 8.1 KIAA1852 ( 948 res) fj01514 ( 948) 115 26.2 8.6 KIAA0079 ( 1102 res) ha03543 (1102) 114 26.2 10 KIAA0999 ( 1371 res) fj10213 (1371) 114 26.4 11 KIAA0450 ( 1182 res) hj05822 (1182) 112 26.0 12 KIAA1870 ( 832 res) hh05136b ( 832) 109 25.4 13 FLJ00237 ( 351 res) sj07406 ( 351) 104 24.1 13 KIAA1644 ( 132 res) fg07060 ( 132) 96 22.4 16 FLJ00201 ( 705 res) sj04110 ( 705) 105 24.8 17 FLJ00318 ( 127 res) sh07374 ( 127) 95 22.3 17 KIAA1862 ( 1070 res) aj00563 (1070) 107 25.3 18 KIAA1509 ( 1365 res) fh14721 (1365) 108 25.6 19 FLJ00072 ( 204 res) as00072 ( 204) 97 22.9 19 KIAA0533 ( 1645 res) hg03784 (1645) 109 25.9 19 KIAA0603 ( 1348 res) hg01488b (1348) 107 25.5 20 KIAA1187 ( 813 res) fk03027 ( 813) 104 24.8 20 KIAA0672 ( 824 res) hk02382 ( 824) 104 24.8 20 KIAA1669 ( 1405 res) fh18133 (1405) 107 25.5 20 FLJ00288 ( 217 res) sh02579 ( 217) 95 22.7 23 KIAA0881 ( 1064 res) hk07534 (1064) 104 25.0 23 KIAA0731 ( 1096 res) hk03714 (1096) 104 25.0 23 KIAA0322 ( 1614 res) hg00462s1 (1614) 105 25.4 26 FLJ00169 ( 432 res) sh07709 ( 432) 97 23.4 27 KIAA1931 ( 514 res) fj14393 ( 514) 98 23.7 27 FLJ00056 ( 1310 res) as00056 (1310) 103 25.0 28 FLJ00128 ( 1546 res) sh01521 (1546) 103 25.1 30 KIAA1267 ( 1105 res) hj06438 (1105) 101 24.6 30 KIAA0817 ( 2785 res) hg01392s2 (2785) 106 25.9 31 KIAA0490 ( 135 res) hh00727 ( 135) 88 21.5 32 KIAA1142 ( 467 res) hh05864 ( 467) 95 23.3 33 KIAA0907 ( 569 res) hk10396 ( 569) 96 23.5 33 KIAA1887 ( 967 res) fk02232 ( 967) 99 24.3 33 KIAA1120 ( 1024 res) hg02941 (1024) 99 24.3 34 KIAA0154 ( 692 res) ha03131 ( 692) 96 23.7 36 KIAA0149 ( 830 res) ha01221 ( 830) 97 23.9 36 KIAA1030 ( 763 res) fh00432 ( 763) 96 23.7 38 FLJ00384 ( 118 res) sj03287 ( 118) 85 21.0 39 FLJ00235 ( 141 res) sj07209 ( 141) 86 21.3 39 KIAA1234 ( 727 res) fh08618 ( 727) 95 23.6 40 KIAA1960 ( 871 res) hk03842 ( 871) 96 23.8 41 KIAA0613 ( 734 res) hg01088b ( 734) 95 23.6 41 KIAA1681 ( 1236 res) fh23697 (1236) 98 24.3 41 >>FLJ00283 ( 500 res) sh02088 (500 aa) initn: 202 init1: 131 opt: 136 Z-score: 105.8 bits: 28.3 E(): 1.1 Smith-Waterman score: 146; 26.174% identity (43.960% similar) in 298 aa overlap (7-239:141-432) 10 20 30 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTG ::. .:: : ::.::.:..: : : FLJ002 QGYHEGPALSSGVSECLGESRPGEDGGTGPALQECTVGTLPPPRPRREGRSLPQSGRCTH 120 130 140 150 160 170 40 50 60 70 80 FLJ001 QALPCRARPPAPAPSHPSSSLSLT--PGP-GSPRQTGP-------PCQTV----AALYGL . : : : : : . . ::: ::: :.: ..: : . : : . FLJ002 LGTPGRLGAPHPCPPERALPLSLGAWPGPPGGPSVSAPKDIRSVRPISLVRPVLPATLSH 180 190 200 210 220 230 90 100 110 120 FLJ001 GA-WQSHC----GGGVG-----CH---GQGRQPLG---CQGWWSTLNPYLLESPGLFHTR :. : : .::: : :. :. . :: . : .. :: ..:. FLJ002 GVPWPVACRECFSGGVPTPWLICPRLAGDIRSTANLSRSQGRGTHLA--FVSSPQALRTQ 240 250 260 270 280 130 140 150 160 170 FLJ001 SCGKLWDPKAVLISGVTSSHSSLGSPGTRPGV--------SLCKELPGCWAELCCRP--- . : .: : ........ : :: :. .: .: : : :: FLJ002 AFQVLLQPLACVLKATVQAP---GPPGLLDGTADDATTVDTLLASKSSC-AGLLCRTLAH 290 300 310 320 330 340 180 190 200 210 FLJ001 ----RKMTKKDRAEPHLPLLGGP-------EGARAQQSPILHSL---------GSKRLPR . . .. :. :::. .:. : : . : : :: FLJ002 LEELQPLPQRPSPWPQASLLGATVTVLRLCDGSAAPASSVGGHLCGTPGGLRPGPASSPR 350 360 370 380 390 400 220 230 240 250 260 270 FLJ001 CGWQLLTSS----GGAAGGLCPMGHRREKDGGRVCTLGRTGGRHRPEQVAWAHEKGVSET . .:.. .: ::. :: : :: FLJ002 LPGDAVTGDRPPGAGDAGACCPPGVPREPRLQPHGTVVGIESEERREAEAVGPTPDSTPS 410 420 430 440 450 460 >>FLJ00053 ( 443 res) as00053 (443 aa) initn: 151 init1: 129 opt: 134 Z-score: 104.9 bits: 28.0 E(): 1.2 Smith-Waterman score: 135; 27.313% identity (48.018% similar) in 227 aa overlap (7-194:141-357) 10 20 30 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTG ::. .:: : ::.::.:..: : : FLJ000 QGYHEGPALSSGVSECLGESRPGEDGGTGPALQECIVGTLPPPRPRREGRSLPQSGRCTH 120 130 140 150 160 170 40 50 60 70 80 FLJ001 QALPCRARPPAPAPSHPSSSLSLT--PGP-GSPRQTGP-------PCQTV-----AAL-Y . : : : : : . . ::: ::: :.: ..: : . : :.: . FLJ000 LGTPGRLGAPHPCPPERALPLSLGAWPGPPGGPSVSAPKDIRSVRPISLVRPVLPATLSH 180 190 200 210 220 230 90 100 110 120 FLJ001 GLGAWQSHC----GGGVG-----CH---GQGRQPLG---CQGWWSTLNPYLLESPGLFHT :. : : .::: : :. :. . :: . : .. :: ..: FLJ000 GI-PWPVACRECFSGGVPTPWLICPRLAGDIRSTANLSRSQGRGTHLA--FVSSPQALRT 240 250 260 270 280 130 140 150 160 170 FLJ001 RSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGV--------SLCKELPGCWAELCCRPRK .. : .: : ........ : :: :. .: .: . :: : FLJ000 QAFQVLLQPLACVLKATVQAP---GPPGLLDGTADDATTVDTLLASKSSCAGLLC---RT 290 300 310 320 330 340 180 190 200 210 220 230 FLJ001 MTKKDRAEPHLPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGHR ... .. .: :: .: FLJ000 LAHLEELQP-LPQRPSPWPQASLLGATVTVLRLCDGSAAPASSVGGHLCGTLAGCVRVQR 350 360 370 380 390 400 >>KIAA0927 ( 1001 res) hg03734 (1001 aa) initn: 86 init1: 58 opt: 133 Z-score: 101.2 bits: 28.4 E(): 1.9 Smith-Waterman score: 136; 29.646% identity (49.558% similar) in 226 aa overlap (29-242:12-217) 10 20 30 40 50 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRA--RPPAPAPS---HPSS :. : . .: : :::.:::: .:.. KIAA09 RASAQGAPEAAPARGLLPRSRFPFLAHRRPPSPAPSPSARPTA 10 20 30 40 60 70 80 90 100 110 FLJ001 SLSLTPGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPY : : :. : . :: .:.: :.. . . :. . . :. : .: : :.:: KIAA09 SGSAPPAATMP-AARPP---AAGLRGISLFLALLLGSPAAALE-RDALP-EGDASPLGPY 50 60 70 80 90 120 130 140 150 160 170 FLJ001 LLESPGLFHTRSCGKLWDPKAVLISGVTSSHSS--LGS---PGTRPGVSLCKELPGCWAE :: : : . : :: . :. . .::.:. :: :: : : ...:. KIAA09 LLPS-GAPERGSPGKEHPEERVVTAPPSSSQSAEVLGELVLDGTAP--SAHHDIPALSPL 100 110 120 130 140 150 180 190 200 210 220 FLJ001 LCCRPRKMTKKDRAEPH--LPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAA : :.. : :. :: : ..:: : : .. .. . : : : :. KIAA09 L---PEEARPKHALPPKKKLPSLKQVNSARKQLRP--KATSAATVQRAGSQ------PAS 160 170 180 190 200 230 240 250 260 270 280 FLJ001 GGLCPMGHRREKDGGRVCTLGRTGGRHRPEQVAWAHEKGVSETGCLSQMPGVDEADEWQ :: .. :: : KIAA09 QGLDLLSSSTEKPGPPGDPDPIVASEEASEVPLWLDRKESAVPTTPAPLQISPFTSQPYV 210 220 230 240 250 260 >>KIAA1249 ( 949 res) hh04184 (949 aa) initn: 45 init1: 45 opt: 128 Z-score: 98.1 bits: 27.8 E(): 2.9 Smith-Waterman score: 128; 24.561% identity (47.368% similar) in 228 aa overlap (15-226:608-825) 10 20 30 FLJ001 LLPEKCALMWLHLGTRAPQRPKRES-RGFPG--------WGCRT :.:: : :.. .: : . KIAA12 TPRDKQRLSYGAFTNQIFVSTSTDSPTSPTTEAPPLPPRNAGKGPTGPPSTLPLSTQTSS 580 590 600 610 620 630 40 50 60 70 80 90 FLJ001 GQALPCRARPPAPAPSHPSSSLSLTPGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGC :.. . ::: : :.: . .:: : :: ::: . .. . :. .: KIAA12 GSSTLSKKRPPPPPPGH-KRTLS---DPPSPLPHGPPNKGAVPWGNDGGPSSSSKTTNKF 640 650 660 670 680 690 100 110 120 130 140 150 FLJ001 HGQGRQPLGCQGWWSTLNPYLLES-PGLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGT .: ..: . .. ..:.: .: . : :. .: ::.. . .. :.:. KIAA12 EGLSQQS-STSSAKTALGPRVLPKLPQKVALRKTDHLSLDKATIPPEIFQKSSQLAELPQ 700 710 720 730 740 750 160 170 180 190 200 FLJ001 RPGVSLCKELPGCWAELCCRPR--KMTKKDRAEPHLPLLGG----PEGARAQQSPILHSL .: . .:: .:: .:. . : : : :: :. . .: ...: KIAA12 KPPPG---DLPPKPTELAPKPQIGDLPPKPGELPPKPQLGDLPPKPQLSDLPPKPQMKDL 760 770 780 790 800 210 220 230 240 250 260 FLJ001 GSKRLPRCGWQLLTSSGGAAGGLCPMGHRREKDGGRVCTLGRTGGRHRPEQVAWAHEKGV : :. : : :. : KIAA12 PPK--PQLGDLLAKSQTGDVSPKAQQPSEVTLKSHPLDLSPNVQSRDAIQKQASEDSNDL 810 820 830 840 850 860 >>KIAA1093 ( 1727 res) fh18956 (1727 aa) initn: 119 init1: 79 opt: 126 Z-score: 94.5 bits: 28.0 E(): 4.6 Smith-Waterman score: 126; 31.461% identity (55.056% similar) in 89 aa overlap (42-120:1623-1711) 20 30 40 50 60 FLJ001 HLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPA--PSHPSSSL-SLTPGPGSPRQ .:.::.:: :: :... :: : .. KIAA10 AQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQNQSDP 1600 1610 1620 1630 1640 1650 70 80 90 100 110 120 FLJ001 TGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTL-------NPYLLESPG .:: . .. ::: :.: ::. : : . : .. :.: .:. . :: KIAA10 VGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPA 1660 1670 1680 1690 1700 1710 130 140 150 160 170 180 FLJ001 LFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPRKMTKK KIAA10 PLLPGDLLGGGSDSI 1720 >>KIAA2013 ( 730 res) bm04064 (730 aa) initn: 131 init1: 103 opt: 115 Z-score: 90.6 bits: 26.0 E(): 7.6 Smith-Waterman score: 115; 30.488% identity (54.878% similar) in 82 aa overlap (14-85:4-81) 10 20 30 40 50 FLJ001 LLPEKCALMWLHLGTRAPQRPKRES--------RGFPGWGCRTGQALPCRARPPAPAPSH : : :.: .... :: :::. :.: . :: :. . KIAA20 SFDGWRPPRRRRKQGWRLLRRLRRG-PGWAPRSGPGSEARAAGPVGWAAG 10 20 30 40 60 70 80 90 100 110 FLJ001 PSSSLSLTPGPGSPRQTGPPCQTVAALYGL--GAWQSHCGGGVGCHGQGRQPLGCQGWWS :...:. :.::.: : . .: :: ..: KIAA20 PAAALAPLPAPGGPMWLQ---QRLKGLPGLLSSSWARRLLCLLGLLLLLLWFGGSGARRA 50 60 70 80 90 100 120 130 140 150 160 170 FLJ001 TLNPYLLESPGLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAE KIAA20 AGGLHLLPWSRGEPGAAEPSACLEAATRAWRGLRERGEVVPLGPGVPALVANGFLALDVA 110 120 130 140 150 160 >>KIAA1816 ( 1162 res) fh16716 (1162 aa) initn: 68 init1: 49 opt: 117 Z-score: 90.1 bits: 26.6 E(): 8 Smith-Waterman score: 117; 24.026% identity (51.299% similar) in 154 aa overlap (50-201:390-534) 20 30 40 50 60 70 FLJ001 RPKRESRGFPGWGCRTGQALPCRARPPAPAPSH-PSSSLSLTPGPGSPRQTGPPCQTVAA ::: : . .:. . : ..::: .::.. KIAA18 EDFEEKKEPEFSQPATETPLSQESASVKSDPSHSPFAHVSMGSPQARPSSSGPPFSTVST 360 370 380 390 400 410 80 90 100 110 120 130 FLJ001 LYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYLLESPGLFHTR-SCGKLWDPKAV .: . : .. . . .: .: . : .: ..:: : . : : .: :: KIAA18 ATSLPSVASTPAAP----NPASSPANC-AVQSPQTPNQAHTPGQAPPRPGNGYLLNPAAV 420 430 440 450 460 470 140 150 160 170 180 190 FLJ001 LISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPRKMTKKDRAEPHLPLLGGPEGA ..: .:. .. : :. .: :.. :. : . : .:.. . . . KIAA18 TVAGSASGPVAVPSSDMSPAEQL-KQMA---AQQQQRAKLMQQKQQQQQQQQQQQQQQQQ 480 490 500 510 520 530 200 210 220 230 240 250 FLJ001 RAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGHRREKDGGRVCTLGRTGGRHRP . :: KIAA18 QQQQQHSNQTSNWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANNLQKTT 540 550 560 570 580 590 >>KIAA1717 ( 420 res) pf00208 (420 aa) initn: 111 init1: 111 opt: 111 Z-score: 90.0 bits: 25.1 E(): 8.1 Smith-Waterman score: 111; 43.590% identity (53.846% similar) in 39 aa overlap (32-70:2-40) 10 20 30 40 50 60 FLJ001 LPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPAPSHPSSSLSLTP ::: : : . :: : : : . :. KIAA17 KGCRGRQCEPAPTAPPLPPPPPNSRAPELAQ 10 20 30 70 80 90 100 110 120 FLJ001 GPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYLLESPG ::.:: :: KIAA17 PPGAPRGTGGSRAAPSWAVSPAAMDSDDEMVEEAVEGHLDDDGLPHGFCTVTYSSTDRFE 40 50 60 70 80 90 >>FLJ00248 ( 501 res) sj08681 (501 aa) initn: 107 init1: 51 opt: 112 Z-score: 90.0 bits: 25.4 E(): 8.1 Smith-Waterman score: 112; 26.941% identity (43.836% similar) in 219 aa overlap (15-203:166-371) 10 20 30 40 FLJ001 LLPEKCALMWLHLGTRA-PQRPKRESRGFPGWGCRTGQALPCRA ::: : :.: : : ::..: :. FLJ002 GNAECCPGRRRGGARARRRRPRDQAFRRARTRASPGAPERTPPGSWGHPHGTGEGLG-RS 140 150 160 170 180 190 50 60 70 80 90 FLJ001 RP-PAPAPSHPSSSLSLTPGPGSPRQTGP---PCQTVAALYGLGAWQSHCGGGVG-CHGQ : : . : .. : .: : . : :: : ::: ..:: ... : .. FLJ002 RGGTATGGLHAFTTRSTEASPLSLLEIGSLGLPCTRHPWAPGEGAW-GRCGCSLSPCPSS 200 210 220 230 240 250 100 110 120 130 FLJ001 GRQPLGCQGW-W--STLNPYLL------ESPGLFHTRSC--------GKL-----WDPKA . : .: : . : :. : . :: :: ... :::: FLJ002 PQPPSRSPSWIWREQLLLPHHLPGPATEQPPGAPDPRSPQVAWEVAPSRMTPLAPWDPKY 260 270 280 290 300 310 140 150 160 170 180 190 FLJ001 VLISGVTSSHSSLGSPGTR-PGVSLCKELPGCWAELCCRPRKMTKKDRA-EPHLPLLGGP .: .. : :. : .::. :. : : . . :. .: : : FLJ002 EAKAGPRPVWGANCSSGASFSGRTLCH--PSFW------PLYEAASGRGLRPVAPATGHW 320 330 340 350 360 200 210 220 230 240 250 FLJ001 EGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGHRREKDGGRVCTLGRTGGR .: ::.: FLJ002 NG---QQAPPDAGFPVVCCEDVFLSDPLLPRGQRVPLYLSKAPQQMMGSLKLLPPPPIMS 370 380 390 400 410 420 >>KIAA1852 ( 948 res) fj01514 (948 aa) initn: 156 init1: 84 opt: 115 Z-score: 89.6 bits: 26.2 E(): 8.6 Smith-Waterman score: 125; 36.145% identity (53.012% similar) in 83 aa overlap (16-87:84-165) 10 20 30 40 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARP :. :: : : :: :. : : : : KIAA18 FAVGGDGGGGWSGTGTTKSILPPASTQVPERSQPRPGRARRRGPG-TCHGGAAARRRKCP 60 70 80 90 100 110 50 60 70 80 90 FLJ001 PAP-APSHPSSSLSLTPG---PGSPRQTG----P---PCQTVAALYGLGAWQSHCGGGVG :. :::.: ..: ::: : : ..: : : :.: .. ... : : KIAA18 PGTTAPSRPRGALRSTPGKQPPLSAAEVGICCVPGQVPGQSVLGMAAINPWASWGALTDQ 120 130 140 150 160 170 100 110 120 130 140 150 FLJ001 CHGQGRQPLGCQGWWSTLNPYLLESPGLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGT KIAA18 SWGMTAVDPWASWALCPQYPAWHVEGSLEEGRRATGLPAAQVQEPVTFKDVAVDFTQEEW 180 190 200 210 220 230 287 residues in 1 query sequences 2210707 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:34:35 2009 done: Fri Feb 27 10:34:35 2009 Total Scan time: 0.430 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]