# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00104.fasta.nr -Q ../query/FLJ00104.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00104, 287 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824214 sequences Expectation_n fit: rho(ln(x))= 5.2155+/-0.000196; mu= 10.7506+/- 0.011 mean_var=98.1223+/-18.605, 0's: 34 Z-trim: 37 B-trim: 125 in 1/64 Lambda= 0.129476 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440512|dbj|BAB15786.1| FLJ00104 protein [Homo ( 287) 2137 408.8 5.5e-112 gi|30025888|gb|AAP04412.1| unknown [Homo sapiens] ( 291) 2137 408.8 5.6e-112 >>gi|10440512|dbj|BAB15786.1| FLJ00104 protein [Homo sap (287 aa) initn: 2137 init1: 2137 opt: 2137 Z-score: 2166.7 bits: 408.8 E(): 5.5e-112 Smith-Waterman score: 2137; 100.000% identity (100.000% similar) in 287 aa overlap (1-287:1-287) 10 20 30 40 50 60 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPAPSHPSSSLSLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPAPSHPSSSLSLT 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 PGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYLLESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYLLESP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ001 GLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPRKMTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 GLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPRKMTK 130 140 150 160 170 180 190 200 210 220 230 240 FLJ001 KDRAEPHLPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGHRREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 KDRAEPHLPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGHRREK 190 200 210 220 230 240 250 260 270 280 FLJ001 DGGRVCTLGRTGGRHRPEQVAWAHEKGVSETGCLSQMPGVDEADEWQ ::::::::::::::::::::::::::::::::::::::::::::::: gi|104 DGGRVCTLGRTGGRHRPEQVAWAHEKGVSETGCLSQMPGVDEADEWQ 250 260 270 280 >>gi|30025888|gb|AAP04412.1| unknown [Homo sapiens] (291 aa) initn: 2137 init1: 2137 opt: 2137 Z-score: 2166.6 bits: 408.8 E(): 5.6e-112 Smith-Waterman score: 2137; 100.000% identity (100.000% similar) in 287 aa overlap (1-287:5-291) 10 20 30 40 50 FLJ001 LLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPAPSHPSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 MPGKLLPEKCALMWLHLGTRAPQRPKRESRGFPGWGCRTGQALPCRARPPAPAPSHPSSS 10 20 30 40 50 60 60 70 80 90 100 110 FLJ001 LSLTPGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 LSLTPGPGSPRQTGPPCQTVAALYGLGAWQSHCGGGVGCHGQGRQPLGCQGWWSTLNPYL 70 80 90 100 110 120 120 130 140 150 160 170 FLJ001 LESPGLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 LESPGLFHTRSCGKLWDPKAVLISGVTSSHSSLGSPGTRPGVSLCKELPGCWAELCCRPR 130 140 150 160 170 180 180 190 200 210 220 230 FLJ001 KMTKKDRAEPHLPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 KMTKKDRAEPHLPLLGGPEGARAQQSPILHSLGSKRLPRCGWQLLTSSGGAAGGLCPMGH 190 200 210 220 230 240 240 250 260 270 280 FLJ001 RREKDGGRVCTLGRTGGRHRPEQVAWAHEKGVSETGCLSQMPGVDEADEWQ ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 RREKDGGRVCTLGRTGGRHRPEQVAWAHEKGVSETGCLSQMPGVDEADEWQ 250 260 270 280 290 287 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 22:59:04 2009 done: Fri Feb 27 23:04:37 2009 Total Scan time: 773.120 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]