# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/as00116.fasta.huge -Q ../query/FLJ00116.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00116, 169 aa vs ./tmplib.10216 library 2210825 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.0351+/-0.00423; mu= 18.1402+/- 0.287 mean_var=106.3421+/-23.054, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.124372 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1662 ( 1653 res) fj03879s1 (1653) 119 31.7 0.2 KIAA0533 ( 1645 res) hg03784 (1645) 101 28.4 1.9 KIAA0353 ( 1614 res) hg01758y1 (1614) 99 28.1 2.4 KIAA1949 ( 662 res) fj02913 ( 662) 94 26.5 2.9 KIAA0651 ( 1114 res) sj09778 (1114) 96 27.2 2.9 FLJ00007 ( 701 res) as00007 ( 701) 94 26.6 3 KIAA1987 ( 357 res) fk04103 ( 357) 91 25.5 3.1 FLJ00284 ( 366 res) sh02281 ( 366) 87 24.8 5.1 KIAA1297 ( 2242 res) fg03883 (2242) 94 27.4 5.3 KIAA0222 ( 1204 res) ha02586 (1204) 91 26.4 5.6 FLJ00139 ( 585 res) sh03241 ( 585) 88 25.3 5.7 KIAA1991 ( 712 res) bf00209 ( 712) 86 25.1 8.1 KIAA0434 ( 1571 res) hh02165 (1571) 88 26.1 9.3 KIAA1545 ( 968 res) fj14026s1 ( 968) 86 25.4 9.4 KIAA1682 ( 775 res) fh23774 ( 775) 84 24.8 11 KIAA1458 ( 612 res) fh16694 ( 612) 83 24.5 11 KIAA1927 ( 1325 res) hj03131 (1325) 86 25.6 11 KIAA1981 ( 862 res) fk03148(revised) ( 862) 83 24.7 13 KIAA1695 ( 1199 res) fj11471 (1199) 84 25.1 13 FLJ00379 ( 487 res) sj00523 ( 487) 80 23.8 14 KIAA0881 ( 1064 res) hk07534 (1064) 83 24.9 14 KIAA0497 ( 239 res) hg00150 ( 239) 75 22.4 18 KIAA1512 ( 2010 res) fg04660y1 (2010) 83 25.3 20 KIAA0772 ( 469 res) hk05119 ( 469) 77 23.2 20 KIAA0642 ( 1329 res) hh02837 (1329) 81 24.7 21 FLJ00176 ( 403 res) sj00934 ( 403) 76 22.9 21 KIAA0620 ( 1985 res) hg04174 (1985) 82 25.1 22 KIAA2011 ( 1091 res) pj02017 (1091) 79 24.2 24 KIAA1026 ( 519 res) fh00114 ( 519) 76 23.1 24 KIAA1061 ( 693 res) hj00491 ( 693) 77 23.5 24 FLJ00019 ( 732 res) as00019 ( 732) 77 23.5 25 KIAA1878 ( 453 res) pj01649 ( 453) 75 22.8 25 KIAA0227 ( 336 res) ha02748 ( 336) 73 22.3 28 KIAA0842 ( 1020 res) hk05077 (1020) 77 23.8 29 KIAA1267 ( 1105 res) hj06438 (1105) 77 23.8 31 KIAA0878 ( 687 res) hk07361 ( 687) 75 23.1 31 KIAA0452 ( 453 res) hg00323 ( 453) 73 22.5 32 FLJ00059 ( 477 res) as00059 ( 477) 73 22.5 33 KIAA0112 ( 399 res) ha00609 ( 399) 72 22.2 34 FLJ00009 ( 540 res) as00009 ( 540) 73 22.6 35 KIAA0445 ( 1919 res) hg00102s1 (1919) 78 24.4 36 FLJ00140 ( 579 res) sh03502 ( 579) 73 22.6 36 FLJ00207 ( 288 res) sj04935 ( 288) 70 21.6 37 FLJ00100 ( 672 res) as00100 ( 672) 73 22.8 39 KIAA1269 ( 531 res) hk04070 ( 531) 72 22.4 39 KIAA0296 ( 1838 res) hf00260 (1838) 77 24.2 39 KIAA1875 ( 922 res) pf00972 ( 922) 74 23.2 40 FLJ00010 ( 772 res) as00010 ( 772) 73 22.9 42 KIAA0122 ( 1010 res) ha03733 (1010) 74 23.2 42 FLJ00380 ( 791 res) sj00753 ( 791) 73 22.9 42 >>KIAA1662 ( 1653 res) fj03879s1 (1653 aa) initn: 122 init1: 59 opt: 119 Z-score: 118.8 bits: 31.7 E(): 0.2 Smith-Waterman score: 119; 27.451% identity (53.595% similar) in 153 aa overlap (9-154:1286-1428) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFL--PWVPERGGGELDLVV :::::. . : : . .. . . . KIAA16 RLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGEGPRRGLGAPLTEDQQNRLSEEIE 1260 1270 1280 1290 1300 1310 40 50 60 70 80 90 FLJ001 RELQALEE-ELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQ---QCW .. : ::. ::: . .: .. : ::: ..::.:::. ::. . : KIAA16 KKWQELEKLPLRENKRVPLTALLNQSRGERRGPP-----SDGHEALEKEVQALRAQLEAW 1320 1330 1340 1350 1360 1370 100 110 120 130 140 150 FLJ001 ERDGGPAQPHGPHRLVR-REDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQEL . .: ..:. .: .::: . . :.: .:. . :...:: . ..:: KIAA16 RLQG-----EAPQSALRSQEDGHIPPGYISQEACERSLAEMESSHQQVMEELQRHHEREL 1380 1390 1400 1410 1420 160 FLJ001 ARLVGARPGLIWIPPPGR :: KIAA16 QRLQQEKEWLLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDGLRKQHQSDVEA 1430 1440 1450 1460 1470 1480 >>KIAA0533 ( 1645 res) hg03784 (1645 aa) initn: 60 init1: 60 opt: 101 Z-score: 101.4 bits: 28.4 E(): 1.9 Smith-Waterman score: 101; 30.303% identity (53.788% similar) in 132 aa overlap (30-153:247-371) 10 20 30 40 50 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEA :.: :. . :. :: :: .: :: KIAA05 GTEATLGHAKTLLAAIRAVDRTLSELMSQTGHLGLANASAPSGEQLLRTLAEVERLLWEM 220 230 240 250 260 270 60 70 80 90 100 110 FLJ001 KAGGCGRGPEWSAARRASREAVEKELGALQQ----CWERDGGPAQPHGPHRLVRREDGAA .: : .:. :: .: :... :. .:. ::.. . : . ::...: : KIAA05 RARDLG-APQ--AAAEAELAAAQRLLARVQEQLSSLWEENQALAT-QTRDRLAQHE---A 280 290 300 310 320 120 130 140 150 160 FLJ001 GDRDLRAAV--VIRTLRSQEACLEAVLRRLQG--QCRQELARLVGARPGLIWIPPPGR : ::: :. .. . : . .::. : .:::.: KIAA05 GLMDLREALNRAVDATREAQELNSRNQERLEEALQRKQELSRDNATLQATLHAARDTLAS 330 340 350 360 370 380 KIAA05 VFRLLHSLDQAKEELERLAASLDGARTPLLQRMQTFSPAGSKLRLVEAAEAHAQQLGQLA 390 400 410 420 430 440 >>KIAA0353 ( 1614 res) hg01758y1 (1614 aa) initn: 120 init1: 67 opt: 99 Z-score: 99.5 bits: 28.1 E(): 2.4 Smith-Waterman score: 99; 35.238% identity (51.429% similar) in 105 aa overlap (7-109:109-205) 10 20 30 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVV :: :. . .: : :. . :: : . KIAA03 RELERENLLLEEELRGRRGREGLWAEGQARCAEEARSLRQQLDELSWATALAEGERDALR 80 90 100 110 120 130 40 50 60 70 80 90 FLJ001 RELQALEEELREAAERR--RAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWER :::. :. : ::.: :. .:. :. : : . : : : :.: :: :: :: KIAA03 RELRELQ---RLDAEERAARGRLDAELGAQQR--ELQEALGA-RAALEALLGRLQA--ER 140 150 160 170 180 190 100 110 120 130 140 150 FLJ001 DGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARL : : . : .: KIAA03 RGLDAAHERDVRELRARAASLTMHFRARATGPAAPPPRLREVHDSYALLVAESWRETVQL 200 210 220 230 240 250 >>KIAA1949 ( 662 res) fj02913 (662 aa) initn: 69 init1: 46 opt: 94 Z-score: 98.1 bits: 26.5 E(): 2.9 Smith-Waterman score: 94; 30.928% identity (51.546% similar) in 97 aa overlap (23-116:290-374) 10 20 30 40 50 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPE-RGGGELDLVVRELQALEEELREAAE : :. : . : .:: .:.: : .:: . : KIAA19 EQSPRRKEVESRLSPGESAYQKLGLTEAHKWRPDSRESQEQSLV--QLEATEWRLRSGEE 260 270 280 290 300 310 60 70 80 90 100 110 FLJ001 RRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHGPHRLVRR- :. . : ::: :: . : .:..: :.. :.. . : . .: KIAA19 RQDYSEE-----CGRKEEWPVPGVAPKETAE-----LSETLTREAQGNSSAGVEAAEQRP 320 330 340 350 360 120 130 140 150 160 FLJ001 -EDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWIPPPGR ::: : KIAA19 VEDGERGMKPTEGWKWTLNSGKAREWTPRDIEAQTQKPEPPESAEKLLESPGVEAGEGEA 370 380 390 400 410 420 >>KIAA0651 ( 1114 res) sj09778 (1114 aa) initn: 68 init1: 68 opt: 96 Z-score: 98.1 bits: 27.2 E(): 2.9 Smith-Waterman score: 96; 35.922% identity (54.369% similar) in 103 aa overlap (22-117:922-1019) 10 20 30 40 50 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAE : .::. . :: :. :. :.::::. KIAA06 EARFPEGPERREKLCRANSRDGEAGRAGAAPVAPEKQATELALLQRQHALLQEELRRC-- 900 910 920 930 940 60 70 80 90 100 FLJ001 RRRAAWEAKAGGC--GRGPEWSAARRA-SREAVE--KELGALQQCWERDGGPAQPHGPHR :: . .: .: .: : :: ::: : ..:.:: : . ::. .: KIAA06 RRLGEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGQ---TEPLPAEAPWARR 950 960 970 980 990 1000 110 120 130 140 150 160 FLJ001 LV--RREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWI : ::.. ::: KIAA06 PVDPRRRSLPAGDALYLSFNPPQPSRGTDRLDLPVTTRSVHRNFEDRERQELGSPEERLQ 1010 1020 1030 1040 1050 1060 >>FLJ00007 ( 701 res) as00007 (701 aa) initn: 75 init1: 53 opt: 94 Z-score: 97.9 bits: 26.6 E(): 3 Smith-Waterman score: 94; 32.039% identity (53.398% similar) in 103 aa overlap (69-166:324-420) 40 50 60 70 80 90 FLJ001 LQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGP ::.: :.. ..:::. : . :: FLJ000 LKLFLQEPGVFSPTPPQQFQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDY-K 300 310 320 330 340 350 100 110 120 130 140 150 FLJ001 AQPHGPHRLVRREDGAAGDRDLRAAVVI--RTLRSQEACLEAVLRRLQGQCRQELARLVG : :: ::...: . . . : : : : . .:. .: . ...: : :: : : FLJ000 IQNHG-HRVLQRLEQRRQQASEREAPSIEQRLQEVRESIRRAQVSQVKGAAR--LALLQG 360 370 380 390 400 160 FLJ001 ARPGLI---WIPPPGR : :: :. : FLJ000 A--GLDVERWLKPAMTQAQDEVEQERRLSEARLSQRDLSPTAEDAELSDFEECEETGELF 410 420 430 440 450 460 >>KIAA1987 ( 357 res) fk04103 (357 aa) initn: 71 init1: 46 opt: 91 Z-score: 97.7 bits: 25.5 E(): 3.1 Smith-Waterman score: 91; 33.708% identity (55.056% similar) in 89 aa overlap (22-103:241-327) 10 20 30 40 50 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGG-GELDLVVRELQALEEELREAA : ::.: . : .. : : . : : . KIAA19 PERKQSFLWEGSALTGAWAMEDFYTARLVPPLVPQRPAQGLMQEPVPPL--VPPEHSELS 220 230 240 250 260 60 70 80 90 100 FLJ001 ERRRAAWEAK-AGGCG-RGPEWSAARR---ASREAVE-KELGALQQCWERDGGPAQPHGP ::: : .. ..::: ::: ::..: : .. :. . : . : .:: : .: KIAA19 ERRSPALHGTPTAGCGSRGPSPSASQREHQALQDLVDLAREGLSASPWPGSGGLAGSEGT 270 280 290 300 310 320 110 120 130 140 150 160 FLJ001 HRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWI KIAA19 AGLDVVPGGLPLTGFVVPSQDKHPDRGGR 330 340 350 >>FLJ00284 ( 366 res) sh02281 (366 aa) initn: 45 init1: 45 opt: 87 Z-score: 93.7 bits: 24.8 E(): 5.1 Smith-Waterman score: 87; 27.642% identity (54.472% similar) in 123 aa overlap (51-167:36-149) 30 40 50 60 70 80 FLJ001 LPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREA ... :: ::. : :: . : .: FLJ002 DPSDLSHAFCPCSALPVLQAGPGLPAVNPRDQEMAAGFFTAGSQGLGPFKDMALAFPEEE 10 20 30 40 50 60 90 100 110 120 130 FLJ001 VEKELGALQQCWERDGGPAQPH----GPHRLVRREDGAAGDRDLRAAVV-IRTLRSQEAC .. : .:. : ..:. .: ..... ..::..:.: . . : :: FLJ002 WRHVTPAQIDCF---GEYVEPQDCRVSPGGGSKEKEAKPPQEDLKGALVALTSERFGEAS 70 80 90 100 110 120 140 150 160 FLJ001 LEAV-LRRLQGQCRQELARLVGARPGLIWIPPPGR :.. : :. :.:: . .:. ::: ::: FLJ002 LQGPGLGRV---CEQEPGGPAGSAPGL---PPPQHGAIPLPDEVKTHSSFWKPFQCPECG 130 140 150 160 170 FLJ002 KGFSRSSNLVRHQRTHEEKSYGCVECGKGFTLREYLMKHQRTHLGKRPYVCSECWKTFSQ 180 190 200 210 220 230 >>KIAA1297 ( 2242 res) fg03883 (2242 aa) initn: 124 init1: 59 opt: 94 Z-score: 93.4 bits: 27.4 E(): 5.3 Smith-Waterman score: 114; 31.250% identity (49.306% similar) in 144 aa overlap (8-142:1308-1438) 10 20 30 FLJ001 DTVLGTCAPE--VPAAASQPTF-----LPWVPERGGG ::: ::.:.. :.. .: :: : :. KIAA12 QGPSQGPAAPPSEPKPHAAVFARVASPPPGAPEKRVPSAGGPPVLAEKARVPTVPPRPGS 1280 1290 1300 1310 1320 1330 40 50 60 70 80 90 FLJ001 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ :. .. :: : :..::: ..: . : :: : : : .. KIAA12 SLS---SSIENLESE---------AVFEAKFKRSRESPLSLGLRLLSRSRSE-ERGPFRG 1340 1350 1360 1370 1380 100 110 120 130 140 FLJ001 CWERDG--GPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCR :.:: :. : .:::: . . . .::::. .: : ::: KIAA12 AEEEDGIYRPSPAGTPLELVRRPERSRSVQDLRAVGEPGLVRRLSLSLSQRLRRTPPAQR 1390 1400 1410 1420 1430 1440 150 160 FLJ001 QELARLVGARPGLIWIPPPGR KIAA12 HPAWEARGGDGESSEGGSSARGSPVLAMRRRLSFTLERLSSRLQRSGSSEDSGGASGRST 1450 1460 1470 1480 1490 1500 >>KIAA0222 ( 1204 res) ha02586 (1204 aa) initn: 114 init1: 61 opt: 91 Z-score: 92.9 bits: 26.4 E(): 5.6 Smith-Waterman score: 91; 31.000% identity (47.000% similar) in 100 aa overlap (31-122:496-595) 10 20 30 40 50 FLJ001 DTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAA--ERRRAAWE : :: .: . :.. : :.::. KIAA02 GKVAEPAEYLKYGAWDEALAGDVAFDKDRREYVLVSQEKRKREQDAPAAQGPPRKRASGP 470 480 490 500 510 520 60 70 80 90 100 110 FLJ001 AKAGGCGRGPEWSAARRASREAVEKELGALQQCWE-----RDGGPAQPHGP-HRLVRRED . . :. :::: : :. : ..:.: : :. :: .::: KIAA02 GDPAPAGHLDPRSAARPNRRAAATTGQGKSSECFECGKIFRTYHQMVLHSRVHRRARRER 530 540 550 560 570 580 120 130 140 150 160 FLJ001 GAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIWIPPPGR . ::: :: KIAA02 DSDGDRAARARCGSLSEGDSASQPSSPGSACAAADSPGSGLADEAAEDSGEEGAPEPAPG 590 600 610 620 630 640 169 residues in 1 query sequences 2210825 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:35:52 2009 done: Fri Feb 27 10:35:52 2009 Total Scan time: 0.350 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]