# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sf00009.fasta.huge -Q ../query/FLJ00342.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00342, 233 aa vs ./tmplib.10216 library 2210761 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.0411+/-0.00515; mu= 15.5119+/- 0.348 mean_var=147.9602+/-31.231, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.105439 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00042 ( 452 res) as00042 ( 452) 1596 253.2 1.5e-68 FLJ00361 ( 366 res) sh04352 ( 366) 104 26.1 2.8 KIAA1852 ( 948 res) fj01514 ( 948) 104 26.8 4.7 KIAA1304 ( 1051 res) fh04032 (1051) 104 26.9 4.9 KIAA0306 ( 1451 res) hg00063 (1451) 102 26.8 7.2 KIAA1909 ( 1287 res) ff10210 (1287) 98 26.1 10 KIAA1100 ( 444 res) hk07907 ( 444) 92 24.5 11 FLJ00402 ( 137 res) sj07511 ( 137) 85 22.6 12 KIAA0290 ( 906 res) ha06644 ( 906) 94 25.2 13 FLJ00007 ( 701 res) as00007 ( 701) 92 24.8 14 KIAA1887 ( 967 res) fk02232 ( 967) 93 25.1 15 KIAA1193 ( 544 res) fg00739 ( 544) 89 24.1 17 KIAA1506 ( 3309 res) ff04330 (3309) 98 26.7 17 KIAA1064 ( 1315 res) hj05008s1 (1315) 93 25.3 18 FLJ00084 ( 641 res) as00084 ( 641) 89 24.2 18 FLJ00199 ( 383 res) sj03574 ( 383) 86 23.4 19 KIAA0865 ( 1900 res) hk06640y1 (1900) 94 25.7 19 KIAA0802 ( 1578 res) hh07536 (1578) 93 25.5 20 FLJ00283 ( 500 res) sh02088 ( 500) 87 23.8 20 KIAA1027 ( 2550 res) fh00156s1 (2550) 95 26.1 20 KIAA1306 ( 1154 res) fh05845 (1154) 91 24.9 20 KIAA0505 ( 200 res) hh00043 ( 200) 82 22.4 21 KIAA0302 ( 2414 res) hf00409s2 (2414) 94 25.9 22 KIAA0549 ( 469 res) hh00779 ( 469) 85 23.4 24 KIAA0339 ( 1709 res) hg01304(revised) (1709) 91 25.2 25 KIAA0223 ( 1165 res) ha02995 (1165) 89 24.6 25 KIAA0517 ( 792 res) hg00752 ( 792) 86 23.9 28 KIAA1886 ( 655 res) fk01837 ( 655) 85 23.6 28 KIAA0905 ( 1229 res) hk10341 (1229) 88 24.5 29 FLJ00355 ( 469 res) sh02302 ( 469) 83 23.1 29 KIAA0913 ( 1881 res) fh07519s2 (1881) 90 25.1 29 KIAA0830 ( 523 res) hj04436 ( 523) 83 23.2 31 KIAA0495 ( 209 res) hg00106 ( 209) 78 21.8 32 KIAA1868 ( 463 res) fj22550 ( 463) 82 23.0 32 FLJ00384 ( 118 res) sj03287 ( 118) 75 21.0 33 KIAA1986 ( 334 res) pg00636 ( 334) 80 22.4 34 KIAA0346 ( 1682 res) hg01508s1 (1682) 88 24.7 34 KIAA0602 ( 962 res) hg01082b ( 962) 85 23.9 35 KIAA0333 ( 1223 res) pf04993 (1223) 86 24.2 35 KIAA1575 ( 1010 res) fj01374s1 (1010) 85 23.9 36 FLJ00294 ( 681 res) sh03769 ( 681) 83 23.4 36 KIAA0665 ( 760 res) hk02064 ( 760) 83 23.4 38 KIAA1070 ( 826 res) hj05602 ( 826) 83 23.5 39 KIAA1110 ( 740 res) hh04831b(revised) ( 740) 82 23.3 41 KIAA1390 ( 505 res) hh08938 ( 505) 80 22.7 42 KIAA1816 ( 1162 res) fh16716 (1162) 84 23.9 43 KIAA0268 ( 1193 res) ha07061 (1193) 84 23.9 43 KIAA1076 ( 804 res) hj06779 ( 804) 82 23.3 43 FLJ00252 ( 819 res) sj09394 ( 819) 82 23.3 44 FLJ00004 ( 698 res) as00004 ( 698) 81 23.1 45 >>FLJ00042 ( 452 res) as00042 (452 aa) initn: 1618 init1: 1585 opt: 1596 Z-score: 1324.0 bits: 253.2 E(): 1.5e-68 Smith-Waterman score: 1596; 96.218% identity (96.639% similar) in 238 aa overlap (2-233:215-452) 10 20 FLJ003 TGGPRRGP------VGNKSDLRSGSSMEAVL :: .:: ::::::::::::::::: FLJ000 PAGSHVPAGSLTSQPGFAFQIRTKWIPLVNGGTTQGPRVPIILVGNKSDLRSGSSMEAVL 190 200 210 220 230 240 30 40 50 60 70 80 FLJ003 PIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 PIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRI 250 260 270 280 290 300 90 100 110 120 130 140 FLJ003 FRLSDQDLDQALSDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDRLTLDGEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 FRLSDQDLDQALSDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDRLTLDGEA 310 320 330 340 350 360 150 160 170 180 190 200 FLJ003 GCPPVPGECGEGAVPGAPPALSRCRFPLPEHALHPARPARDHLDHPAALRLQRCPGADCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ000 GCPPVPGECGEGAVPGAPPALSRCRFPLPEHALHPARPARDHLDHPAALRLQRCPGADCG 370 380 390 400 410 420 210 220 230 FLJ003 LSLPSDPRAPRLQHGAQPPWLPVCAESV :::::::::::::::::::::::::::: FLJ000 LSLPSDPRAPRLQHGAQPPWLPVCAESV 430 440 450 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 118 init1: 66 opt: 104 Z-score: 98.3 bits: 26.1 E(): 2.8 Smith-Waterman score: 104; 31.481% identity (52.778% similar) in 108 aa overlap (128-224:121-221) 100 110 120 130 140 150 FLJ003 SDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDRL----TLDGEAGCPPV--P : ..:: : : . :. : . : FLJ003 RRALSAPAPFRQEMHLWHQVQVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESP 100 110 120 130 140 150 160 170 180 190 200 210 FLJ003 GECGEGAVPGAPPALSRCRFPLPEHALHPARPARDHLDHPAALRLQRCPGADCGLSLPS- :. .. ::.::. . : . :.::::. : .. ::: ::: : . :. FLJ003 GRFRRS--PGGPPGTICAQPPAGAGVPGPGRPARELL----SVGLQRRPGAP-GAASPGP 160 170 180 190 200 220 230 FLJ003 --DPRAP--RLQHGAQPPWLPVCAESV .:.:: : . :.. : FLJ003 RLQPHAPTGRARLGVRGPAGCQARSASVARRANSPRATSRLRPGLQLQPRGEHRPRDLHG 210 220 230 240 250 260 >>KIAA1852 ( 948 res) fj01514 (948 aa) initn: 84 init1: 39 opt: 104 Z-score: 94.3 bits: 26.8 E(): 4.7 Smith-Waterman score: 104; 33.945% identity (48.624% similar) in 109 aa overlap (128-224:35-134) 100 110 120 130 140 150 FLJ003 SDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDR--LTLDG--EAGCPPVPGE :. : : : : : : .: : KIAA18 SHNLANAKWKDPSRALRTRRAPPGKPGTTRRHFADGQTEARGAATYPGLFAVGGDGGGGW 10 20 30 40 50 60 160 170 180 190 200 FLJ003 CGEGAVPGA-PPALSRCRFPLPEHALHPARPARDHLDHP------AALRLQRCPGADCGL : :.. . ::: .. .::.. .: ::.: . : :: : ..:: : KIAA18 SGTGTTKSILPPASTQ----VPERS-QP-RPGRARRRGPGTCHGGAAARRRKCPP---GT 70 80 90 100 110 210 220 230 FLJ003 SLPSDPR-APRLQHGAQPPWLPVCAESV . :: :: : : : ::: KIAA18 TAPSRPRGALRSTPGKQPPLSAAEVGICCVPGQVPGQSVLGMAAINPWASWGALTDQSWG 120 130 140 150 160 170 >>KIAA1304 ( 1051 res) fh04032 (1051 aa) initn: 99 init1: 48 opt: 104 Z-score: 93.9 bits: 26.9 E(): 4.9 Smith-Waterman score: 104; 28.169% identity (52.817% similar) in 142 aa overlap (91-224:766-900) 70 80 90 100 110 FLJ003 HPTAPLYDPEAKQLRPACAQALTRIFRLSDQDLDQALSDEELNAFQKSCFGHPLAPQ--A ::.:...:: . .. . :.. . . KIAA13 LLLYHRASEDWWEGRHNGIDGLVPHQYIVVQDMDDTFSDTLSQKADSEASSGPVTEDKSS 740 750 760 770 780 790 120 130 140 150 160 170 FLJ003 LEDVKTVVCRNVAGGVREDRLTLDGEAGCPPV--PGECGEGAVPGAPP-ALSRCRFPL-- .:... . :. : . ..: :: ::: ::. ..: : :: ::: : KIAA13 SKDMNSPTDRHPDGYLARQRKR--GEPP-PPVRRPGRTSDGHCPLHPPHALSNSSVDLGS 800 810 820 830 840 850 180 190 200 210 220 230 FLJ003 PEHALHPARPARDH-LDHPAALRLQRCPGADCGLSLPSDPRAPRLQHGAQPPWLPVCAES : : :: ... :.. . : .: :: :: . : :.. .:: KIAA13 PSLASHPRGLLQNRGLNNDSPERRRR-PGHG---SLTNISRHDSLKKIDSPPIRRSTSSG 860 870 880 890 900 FLJ003 V KIAA13 QYTGFNDHKPLDPETIAQDIEETMNTALNELRELERQSTAKHAPDVVLDTLEQVKNSPTP 910 920 930 940 950 960 >>KIAA0306 ( 1451 res) hg00063 (1451 aa) initn: 111 init1: 68 opt: 102 Z-score: 90.9 bits: 26.8 E(): 7.2 Smith-Waterman score: 102; 31.325% identity (48.193% similar) in 83 aa overlap (145-224:721-803) 120 130 140 150 160 170 FLJ003 APQALEDVKTVVCRNVAGGVREDRLTLDGEAGCPPVPGECGEGAVPGAPPALSRCRFPL- :. :.:: .::.::: .. :. KIAA03 TKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKAQSVSPVQ 700 710 720 730 740 750 180 190 200 210 220 230 FLJ003 --PEHALHPARPARDHLDHPAALRLQRCPGADCGLSLPSDPRAPRLQHGAQPPWLPVCAE : . :.. . : : :: : : : : . .:.::::: KIAA03 APPPGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPPSKIIQLT 760 770 780 790 800 810 FLJ003 SV KIAA03 PVPVSTPSGLVPPLGPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTSPASSQAG 820 830 840 850 860 870 >>KIAA1909 ( 1287 res) ff10210 (1287 aa) initn: 48 init1: 48 opt: 98 Z-score: 88.1 bits: 26.1 E(): 10 Smith-Waterman score: 98; 28.571% identity (44.361% similar) in 133 aa overlap (32-161:560-689) 10 20 30 40 50 60 FLJ003 GGPRRGPVGNKSDLRSGSSMEAVLPIMSQFPEIETCVECSAKNLRNISELFYYAQKAVLH : : : . .: : : :::. KIAA19 ELARWTRSSELCETVSSWMGPLDPEACPSSPVAECLRSCHQEATSVAAEAFPGAGVAVLK 530 540 550 560 570 580 70 80 90 100 110 FLJ003 PTAPLYDPEAKQLRPACAQALTRIFRLSDQDLDQALSDEELNAFQKSCFGHPLAPQAL-- : : : : :.: ::. :: .. :..: : : . .: : : .:. KIAA19 PHA-LGKPWASQQDLWLQYPQTRL-RL-EEALSEAAPDPSLPPLAQSPPKHERAQEAMRR 590 600 610 620 630 640 120 130 140 150 160 170 FLJ003 -EDVKTVVCRNVAGGVREDRLTLDGEAGCPPVPGECGEGAVPGAPPALSRCRFPLPEHAL . . . .::. : :.: : . :. :: :: KIAA19 HQKPPSFPSTDSGGGAWEPAQPLSGLPGRALLCGQDGEPLGPGLCALWDPLSLLRGLPGA 650 660 670 680 690 700 180 190 200 210 220 230 FLJ003 HPARPARDHLDHPAALRLQRCPGADCGLSLPSDPRAPRLQHGAQPPWLPVCAESV KIAA19 GATTAHLEDSSACSSEPTQTLASRPRKHPQKKMIKKTQSFEIPQPDSGPRDSCQPDHTSV 710 720 730 740 750 760 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 86 init1: 61 opt: 92 Z-score: 87.6 bits: 24.5 E(): 11 Smith-Waterman score: 92; 33.333% identity (48.000% similar) in 75 aa overlap (160-228:8-79) 130 140 150 160 170 180 FLJ003 VAGGVREDRLTLDGEAGCPPVPGECGEGAVPGAPP----ALSRCRFPLPEHALHPARPAR : ::: ::. :.: : . : . KIAA11 VPAQPLHPPAPPMRPWALAVTRWP-PSAPVGQRRFSA 10 20 30 190 200 210 220 230 FLJ003 DHLDHPAALRLQRCPGADCGLSLPS--DPRAPRLQHGAQPPWLPVCAESV . :. .: :: . :. : : : : : ..:: ::: KIAA11 GPGSTPG--QLWGSPGLEGPLASPPARDERLPSQQPPSRPPHLPVEERRASAPAGGSPRM 40 50 60 70 80 90 KIAA11 LHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPACSVMF 100 110 120 130 140 150 >>FLJ00402 ( 137 res) sj07511 (137 aa) initn: 40 init1: 40 opt: 85 Z-score: 86.7 bits: 22.6 E(): 12 Smith-Waterman score: 85; 36.066% identity (50.820% similar) in 61 aa overlap (143-200:78-133) 120 130 140 150 160 FLJ003 PLAPQALEDVKTVVCRNVAGGVREDRLTLDGEAGCPPVPGECGEGAVPGAP---PALSRC : : : : :.. :::.: :: . FLJ004 SQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPW----GRSEVPGTPVRVPAAAAR 50 60 70 80 90 100 170 180 190 200 210 220 FLJ003 RFPLPEHALHPARPARDHLDHPAALRLQRCPGADCGLSLPSDPRAPRLQHGAQPPWLPVC .. ::: .:::. :: :. : : FLJ004 EWAKREHACISKKPARS-LDFPVFALHPRSPSTHT 110 120 130 230 FLJ003 AESV >>KIAA0290 ( 906 res) ha06644 (906 aa) initn: 94 init1: 70 opt: 94 Z-score: 86.3 bits: 25.2 E(): 13 Smith-Waterman score: 97; 25.455% identity (47.879% similar) in 165 aa overlap (69-224:429-578) 40 50 60 70 80 90 FLJ003 ECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQ----DLD :.. .::. : ..: . :. KIAA02 ATAGSLILPPGPGGTMKRHSSRDAAGKPQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLE 400 410 420 430 440 450 100 110 120 130 140 150 FLJ003 QALSDEELNAFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDRLTLDGEAGCPPVPGEC .:.. :.... .: .: .:. . . . .:: :: ::. . : :. KIAA02 SAFDHEDFTG--SSSLGFTSSPSPFSSSSP---ENV-----EDS-GLDSPSHAAPGPSPD 460 470 480 490 500 160 170 180 190 200 210 FLJ003 GEGAVPGAPPALSRCRFPLPEHALHPARPARDH----LDHPAALRLQRCPGADCGLSLPS . ::.: . :: : :: : : : . :. :. :.: . :. KIAA02 SWVPRPGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDL-MPAPA 510 520 530 540 550 560 220 230 FLJ003 DPRAPRLQHG-AQPPWLPVCAESV :: : ..: : :: KIAA02 DPTA---REGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPSPLGSSAASTALERPSFLSQ 570 580 590 600 610 620 >>FLJ00007 ( 701 res) as00007 (701 aa) initn: 84 init1: 55 opt: 92 Z-score: 85.7 bits: 24.8 E(): 14 Smith-Waterman score: 103; 32.593% identity (54.815% similar) in 135 aa overlap (32-144:377-504) 10 20 30 40 50 FLJ003 GGPRRGPVGNKSDLRSGSSMEAVLPIMSQFPEIETCVECSAKNLR--NISELFYYAQKAV : :: .. ...: ..:.. :. :. FLJ000 AARDYKIQNHGHRVLQRLEQRRQQASEREAPSIEQRLQEVRESIRRAQVSQVKGAARLAL 350 360 370 380 390 400 60 70 80 90 100 FLJ003 LHPTAPLYDPEAKQLRPACAQALTRIF--------RLSDQDLDQALSDEELNAFQKSC-- :. .. : : . :.:: .:: .. :::..::. . : ::. :.. : FLJ000 LQGAG--LDVE-RWLKPAMTQAQDEVEQERRLSEARLSQRDLSPTAEDAELSDFEE-CEE 410 420 430 440 450 460 110 120 130 140 150 FLJ003 ----FGHPLAPQALEDVKT-----VVCRNVAGGVREDRLTL-DGEAGCPPVPGECGEGAV : .: ::::: :: : :: :::.::. .:: FLJ000 TGELFEEP-APQALATRALPCPAHVVFRYQAG--REDELTITEGEWLEVIEEGDADEWVK 470 480 490 500 510 160 170 180 190 200 210 FLJ003 PGAPPALSRCRFPLPEHALHPARPARDHLDHPAALRLQRCPGADCGLSLPSDPRAPRLQH FLJ000 ARNQHGEVGFVPERYLNFPDLSLPESSQDSDNPCGAEPTAFLAQALYSYTGQSAEELSFP 520 530 540 550 560 570 233 residues in 1 query sequences 2210761 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:56:28 2009 done: Fri Feb 27 10:56:28 2009 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]