# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sg00018.fasta.huge -Q ../query/FLJ00349.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00349, 146 aa vs ./tmplib.10216 library 2210848 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3928+/-0.00571; mu= 12.5727+/- 0.384 mean_var=191.5964+/-42.866, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.092658 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00072 ( 204 res) as00072 ( 204) 604 90.9 3.1e-20 KIAA0602 ( 962 res) hg01082b ( 962) 129 28.5 0.88 FLJ00201 ( 705 res) sj04110 ( 705) 117 26.7 2.3 KIAA1510 ( 1140 res) fg02934(revised) (1140) 117 27.1 2.9 KIAA1029 ( 1015 res) fh00363 (1015) 116 26.8 3 KIAA0692 ( 783 res) hk03772 ( 783) 107 25.5 6.1 KIAA1927 ( 1325 res) hj03131 (1325) 107 25.8 7.9 KIAA1567 ( 924 res) fh22119 ( 924) 105 25.3 8 KIAA1748 ( 758 res) pj02084 ( 758) 102 24.8 9.6 FLJ00296 ( 187 res) sh03944 ( 187) 93 22.5 11 KIAA1870 ( 832 res) hh05136b ( 832) 101 24.7 11 FLJ00198 ( 677 res) sj03504 ( 677) 99 24.3 12 KIAA1963 ( 488 res) ph00179 ( 488) 96 23.6 13 FLJ00222 ( 656 res) sj06165 ( 656) 96 23.9 15 FLJ00417 ( 600 res) sj06336 ( 600) 95 23.7 16 KIAA1091 ( 1359 res) hk04373 (1359) 98 24.6 19 KIAA1973 ( 1176 res) pf00154 (1176) 97 24.4 19 KIAA1535 ( 711 res) fk12792 ( 711) 94 23.6 19 KIAA1909 ( 1287 res) ff10210 (1287) 97 24.5 20 KIAA0522 ( 1555 res) hg01393 (1555) 98 24.7 20 FLJ00395 ( 1105 res) sj06062 (1105) 96 24.2 20 KIAA0183 ( 1111 res) ha02726 (1111) 96 24.2 20 FLJ00414 ( 1129 res) sg00016 (1129) 96 24.2 20 FLJ00108 ( 216 res) as00108 ( 216) 87 21.9 20 KIAA0450 ( 1182 res) hj05822 (1182) 96 24.3 21 KIAA1648 ( 112 res) fg05002 ( 112) 83 20.8 21 FLJ00400 ( 782 res) sj07486 ( 782) 93 23.6 22 KIAA0239 ( 849 res) ha06313 ( 849) 93 23.6 23 KIAA1780 ( 1192 res) pf01012 (1192) 94 24.0 25 KIAA0464 ( 586 res) hg01093(revised) ( 586) 90 23.0 25 KIAA0989 ( 859 res) hk05377 ( 859) 92 23.5 26 FLJ00329 ( 349 res) sj02919 ( 349) 87 22.2 26 KIAA1093 ( 1727 res) fh18956 (1727) 95 24.4 27 KIAA1907 ( 1737 res) ah00504 (1737) 95 24.4 27 KIAA0457 ( 845 res) hg00693 ( 845) 91 23.4 28 FLJ00227 ( 196 res) sj06355 ( 196) 83 21.2 28 FLJ00085 ( 292 res) as00085 ( 292) 85 21.8 28 KIAA2011 ( 1091 res) pj02017 (1091) 92 23.7 29 KIAA0775 ( 639 res) hk05255 ( 639) 89 22.9 29 KIAA0422 ( 1160 res) hh01205s1 (1160) 92 23.7 30 FLJ00252 ( 819 res) sj09394 ( 819) 90 23.2 30 FLJ00378 ( 855 res) sj00210 ( 855) 90 23.2 31 KIAA0824 ( 1644 res) hh02773 (1644) 93 24.1 32 KIAA0451 ( 983 res) pf06424 ( 983) 90 23.3 33 KIAA1762 ( 1460 res) fh27937(revised) (1460) 92 23.9 33 KIAA0985 ( 697 res) hj08038 ( 697) 88 22.8 33 KIAA0537 ( 698 res) hg03925 ( 698) 88 22.8 33 KIAA1989 ( 1097 res) fh00385 (1097) 90 23.4 35 KIAA1526 ( 963 res) fj04743(revised) ( 963) 89 23.2 36 KIAA1768 ( 1207 res) ph00672(revised) (1207) 90 23.5 36 >>FLJ00072 ( 204 res) as00072 (204 aa) initn: 615 init1: 588 opt: 604 Z-score: 456.6 bits: 90.9 E(): 3.1e-20 Smith-Waterman score: 604; 72.951% identity (77.869% similar) in 122 aa overlap (16-137:1-119) 10 20 30 40 50 60 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL ::::::::::::::::::::::::::::::::::::::::::::: FLJ000 SPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL 10 20 30 40 70 80 90 100 110 120 FLJ003 LPSCCPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRWSAR ::::::::::::::::::::::::::::.:::::: .: : : . : : FLJ000 LPSCCPVPGRTRMPPSLSGPWQSLRPGSKGRGRGPLVGEGRGPPGVGPGNSRARPSW--- 50 60 70 80 90 100 130 140 FLJ003 AGGPLVSGLGTAGLGPPGCVGPRLWP . : . .: : :: FLJ000 VCWPKALALTPPRLPPPNRPASAALATRRCWCCRLPRALVPPGPGTSRPRRVGLGSWKAG 110 120 130 140 150 160 >>KIAA0602 ( 962 res) hg01082b (962 aa) initn: 149 init1: 59 opt: 129 Z-score: 107.4 bits: 28.5 E(): 0.88 Smith-Waterman score: 134; 35.106% identity (53.191% similar) in 94 aa overlap (62-144:7-99) 40 50 60 70 80 FLJ003 GSEPGPSVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMPPS----LSGPWQSLRPG : ::.:: :: ...: : ::. KIAA06 AAARRRPRACPTPGPGPSPPPPGSHVTAPPPSARPA 10 20 30 90 100 110 120 130 140 FLJ003 SEGRGRGPA---GRRGLGAPDTLAPREGAGVRWSARA-GGPLVSGLGTA---GLGPPGCV : :::: :::: :. ..: : :. . : . :. .: .. . :.:: KIAA06 RPPRVRGPAAAPGRRGSGGAGAMAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCV 40 50 60 70 80 90 FLJ003 GPRLWP ::: KIAA06 -PRLCSLTLKKLVVFKELEKELISVVIAVKMQGSKRILRSHEIVLPPSGQVETDLALTFS 100 110 120 130 140 150 >>FLJ00201 ( 705 res) sj04110 (705 aa) initn: 98 init1: 66 opt: 117 Z-score: 99.9 bits: 26.7 E(): 2.3 Smith-Waterman score: 135; 45.783% identity (51.807% similar) in 83 aa overlap (68-141:303-381) 40 50 60 70 80 90 FLJ003 SVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMPPSLSGPWQSLRPGSEG-RG-RGP :: :: ::.: :: :: : .: ::: FLJ002 PKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPG-TRGPPGLIGPTGYGMPGLPGPKGDRGP 280 290 300 310 320 330 100 110 120 130 140 FLJ003 AGRRGLGAPDTLAPREGA--GVRWSARAGGPLVSGL-GTAGL----GPPGCVGPRLWP :: :: : : : . : . ::: :: :.::: :::: : FLJ002 AGVPGL-LGDRGEPGEDGEPGEQGPQGLGGP--PGLPGSAGLPGRRGPPGPKGEAGPGGP 340 350 360 370 380 FLJ002 PGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQ 390 400 410 420 430 440 >>KIAA1510 ( 1140 res) fg02934(revised) (1140 aa) initn: 123 init1: 58 opt: 117 Z-score: 98.0 bits: 27.1 E(): 2.9 Smith-Waterman score: 121; 31.169% identity (47.403% similar) in 154 aa overlap (22-143:854-1002) 10 20 30 40 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGP--SVQCLCTQIIAC :: :.. : ... :: : . :.. KIAA15 HVAVGRSKVRLYVDCRKVAERPLGEMGSPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQI 830 840 850 860 870 880 50 60 70 80 90 FLJ003 VTEDSVLS---CHLLP------SC------CPVPGRTRMPPSLSGP----WQSLRPGSEG : :. . : :: .: : ..: ::. .:: .. :: .: KIAA15 VCSDTWADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQG 890 900 910 920 930 940 100 110 120 130 FLJ003 RG--RGPAGRRGLGAPDTLAPREG----AGVRWSARAG--GPL-VSGL-GTAGL-GPPGC ::: : .: . : .: :. .:.: :: . :: ::::: :::: KIAA15 FPGPRGPPGVKGEKGDHGLPGLQGHPGHQGI--PGRVGLQGPKGMRGLEGTAGLPGPPG- 950 960 970 980 990 1000 140 FLJ003 VGPRLWP :: KIAA15 --PRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESA 1010 1020 1030 1040 1050 >>KIAA1029 ( 1015 res) fh00363 (1015 aa) initn: 64 init1: 64 opt: 116 Z-score: 97.8 bits: 26.8 E(): 3 Smith-Waterman score: 119; 31.452% identity (47.581% similar) in 124 aa overlap (3-125:755-852) 10 20 30 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVG ::..:. : ::. :.: KIAA10 LPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPV-SPSRAWSPRAKQA---------- 730 740 750 760 770 40 50 60 70 80 90 FLJ003 SEPGPSVQCLCTQIIACVTEDSVLSCHLLPSCCP-VPGRTRMPPSLSGPWQSLRPGSEGR : :: . . : : ..: ::. : .:: .: : ::.: : : :: KIAA10 --PRPSFSTRNAGIEAQDRRES------LPTSPPWTPGASRPPSSLDG-WVS--PGPWEP 780 790 800 810 820 100 110 120 130 140 FLJ003 GRGPAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSGLGTAGLGPPGCVGPRLWP ::: . ...: : : . :: :. .:: KIAA10 GRGSS----MSSPPPLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAAR 830 840 850 860 870 KIAA10 RKSASPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRS 880 890 900 910 920 930 >>KIAA0692 ( 783 res) hk03772 (783 aa) initn: 95 init1: 71 opt: 107 Z-score: 92.3 bits: 25.5 E(): 6.1 Smith-Waterman score: 107; 41.071% identity (62.500% similar) in 56 aa overlap (67-120:723-776) 40 50 60 70 80 90 FLJ003 PSVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMP-PSLSGPWQSLRPGSEG-RGRG : :: . :.:::: .: :: .. : . KIAA06 DPHQFPAVHRWKSAVLCYSPSDRQSWPSPAVKGRFKSQLPDLSGP-HSYSPGRNSVAGSN 700 710 720 730 740 750 100 110 120 130 140 FLJ003 PAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSGLGTAGLGPPGCVGPRLWP :: . :::.: .: .:. .: :: KIAA06 PA-KPGLGSPGRYSPVHGSQLRRMARLAELAAL 760 770 780 >>KIAA1927 ( 1325 res) hj03131 (1325 aa) initn: 99 init1: 62 opt: 107 Z-score: 90.2 bits: 25.8 E(): 7.9 Smith-Waterman score: 107; 32.895% identity (48.684% similar) in 76 aa overlap (62-137:1-70) 40 50 60 70 80 90 FLJ003 GSEPGPSVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMPPSLSGPWQSLRPGSEGR :. : : .::::: : :. . KIAA19 PALRPFPPLPSLPPSLSPPPPPPPPAPASA 10 20 30 100 110 120 130 140 FLJ003 GRGPAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSGLGTAGLGPPGCVGPRLWP ::: :.: : : :. . .:::. :: .:.. : KIAA19 PRGPLPGRALTA------RAGVPAAALSRAGSGWGSGAPSAAMDRPLSSSAEAEEELEWQ 40 50 60 70 80 KIAA19 VASRRRKAWAKCRSSWQASETEDLSTEATTQDEEEDEEEDLPGAQLPAAGGRGNVPNEKI 90 100 110 120 130 140 >>KIAA1567 ( 924 res) fh22119 (924 aa) initn: 57 init1: 57 opt: 105 Z-score: 90.2 bits: 25.3 E(): 8 Smith-Waterman score: 105; 34.247% identity (47.945% similar) in 73 aa overlap (65-133:17-88) 40 50 60 70 80 90 FLJ003 PGPSVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMPPSLSGP----WQSLRPGSEG ::.:. : :: . : . . .. : KIAA15 SRSRVPVPGPGAAAAPCPAPASPRRHPSANIPEIKRYAAAAAAAAG 10 20 30 40 100 110 120 130 140 FLJ003 RGRGPAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSGLGTAGLGPPGCVGPRLWP : : :: :: .:: . : : : : ::::.: KIAA15 PGAGGAGDRGEAAPAAAMEALGPGPPASLFQP-PRRPGLGTVGKPIRLLANHFQVQIPKI 50 60 70 80 90 100 KIAA15 DVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDR 110 120 130 140 150 160 >>KIAA1748 ( 758 res) pj02084 (758 aa) initn: 45 init1: 45 opt: 102 Z-score: 88.8 bits: 24.8 E(): 9.6 Smith-Waterman score: 103; 27.083% identity (47.917% similar) in 144 aa overlap (3-130:539-675) 10 20 30 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVG : .:.: . . . .: .. .: . KIAA17 GSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSARLAQQREAERHPRLVPTGPTH 510 520 530 540 550 560 40 50 60 70 80 FLJ003 SEPGP-SVQCLCTQIIACVTEDSVLSCHLLPSCCPVPGRTRMPPSLSGPWQSLRPGS--- ::.: . : .:.: . : .:: . :.::: . : .. :: ::: KIAA17 REPSPVRYDNLSRHIVASLQERE----KLLRQSPPLPGREEEPGLGDSGIQST-PGSGHA 570 580 590 600 610 620 90 100 110 120 130 FLJ003 -------EGRGRGPAGRRGLGAPDTLAPREGA--GVRWSARAG---GPLVSGLGTAGLGP . :.: :. :: : . :: : :.: . .. :: . :: KIAA17 PRTSSSSDDSKRSPLGKTPLGRPAV--PRFGKPDGLRGRGVGSPEPGPTAPYLGRSMSYS 630 640 650 660 670 680 140 FLJ003 PGCVGPRLWP KIAA17 SQKAQPGVSETEEVALQPLLTPKDEVQLKTTYSKSNGQPKSLGSASPGPGQPPLSSPTRG 690 700 710 720 730 740 >>FLJ00296 ( 187 res) sh03944 (187 aa) initn: 72 init1: 72 opt: 93 Z-score: 87.7 bits: 22.5 E(): 11 Smith-Waterman score: 93; 35.000% identity (48.333% similar) in 60 aa overlap (29-87:95-150) 10 20 30 40 50 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSC :: :. ::::. : .. :. . : : FLJ002 GLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDL-C 70 80 90 100 110 120 60 70 80 90 100 110 FLJ003 HLLPSC-CPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRW : . : ::: . : : : :: FLJ002 HPVSSVQCPVSVPSPDPELLRVTWA---PGLKNCLAISGTAEQDFVLLSDLFLPGDCWVL 130 140 150 160 170 180 146 residues in 1 query sequences 2210848 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:01:38 2009 done: Fri Feb 27 11:01:38 2009 Total Scan time: 0.330 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]