# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sg00018.fasta.nr -Q ../query/FLJ00349.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00349, 146 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7823575 sequences Expectation_n fit: rho(ln(x))= 5.1726+/-0.000191; mu= 8.0749+/- 0.011 mean_var=91.1696+/-17.353, 0's: 37 Z-trim: 40 B-trim: 121 in 1/65 Lambda= 0.134323 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748552|dbj|BAC03413.1| FLJ00349 protein [Homo ( 146) 1081 218.1 3.6e-55 gi|18676410|dbj|BAB84857.1| FLJ00072 protein [Homo ( 204) 604 125.8 3e-27 >>gi|21748552|dbj|BAC03413.1| FLJ00349 protein [Homo sap (146 aa) initn: 1081 init1: 1081 opt: 1081 Z-score: 1146.7 bits: 218.1 E(): 3.6e-55 Smith-Waterman score: 1081; 100.000% identity (100.000% similar) in 146 aa overlap (1-146:1-146) 10 20 30 40 50 60 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 LPSCCPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRWSAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LPSCCPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRWSAR 70 80 90 100 110 120 130 140 FLJ003 AGGPLVSGLGTAGLGPPGCVGPRLWP :::::::::::::::::::::::::: gi|217 AGGPLVSGLGTAGLGPPGCVGPRLWP 130 140 >>gi|18676410|dbj|BAB84857.1| FLJ00072 protein [Homo sap (204 aa) initn: 615 init1: 588 opt: 604 Z-score: 645.3 bits: 125.8 E(): 3e-27 Smith-Waterman score: 604; 72.951% identity (77.869% similar) in 122 aa overlap (16-137:1-119) 10 20 30 40 50 60 FLJ003 LPGDFDPLLHPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL ::::::::::::::::::::::::::::::::::::::::::::: gi|186 SPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHL 10 20 30 40 70 80 90 100 110 120 FLJ003 LPSCCPVPGRTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRWSAR ::::::::::::::::::::::::::::.:::::: .: : : . : : gi|186 LPSCCPVPGRTRMPPSLSGPWQSLRPGSKGRGRGPLVGEGRGPPGVGPGNSRARPSW--- 50 60 70 80 90 100 130 140 FLJ003 AGGPLVSGLGTAGLGPPGCVGPRLWP . : . .: : :: gi|186 VCWPKALALTPPRLPPPNRPASAALATRRCWCCRLPRALVPPGPGTSRPRRVGLGSWKAG 110 120 130 140 150 160 146 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 19:48:33 2009 done: Fri Feb 27 19:52:39 2009 Total Scan time: 588.450 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]