# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh00109.fasta.huge -Q ../query/FLJ00271.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00271, 211 aa vs ./tmplib.10216 library 2210783 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.5062+/-0.00516; mu= 5.5243+/- 0.348 mean_var=165.1794+/-37.637, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.099792 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0466 ( 1214 res) pg00625 (1214) 310 56.0 8.8e-09 KIAA1436 ( 924 res) hh15451 ( 924) 119 28.3 1.4 KIAA1949 ( 662 res) fj02913 ( 662) 107 26.4 3.7 KIAA0429 ( 666 res) hk07754 ( 666) 101 25.6 6.8 KIAA0572 ( 1872 res) hh02391 (1872) 107 27.0 7.4 KIAA1856 ( 1134 res) fh03203 (1134) 100 25.7 11 KIAA0775 ( 639 res) hk05255 ( 639) 96 24.8 11 KIAA1986 ( 334 res) pg00636 ( 334) 91 23.8 12 KIAA0442 ( 1266 res) hh03913 (1266) 99 25.6 13 KIAA0751 ( 1200 res) hk04424 (1200) 98 25.5 14 FLJ00159 ( 567 res) sh06608 ( 567) 93 24.4 14 KIAA1870 ( 832 res) hh05136b ( 832) 95 24.8 14 KIAA1284 ( 953 res) hh09454s1 ( 953) 95 24.9 16 KIAA0468 ( 410 res) hg01596 ( 410) 89 23.6 17 KIAA1465 ( 785 res) fh13187 ( 785) 93 24.5 17 KIAA0290 ( 906 res) ha06644 ( 906) 93 24.6 19 KIAA0749 ( 678 res) hk04328 ( 678) 91 24.2 19 FLJ00093 ( 977 res) as00093 ( 977) 93 24.6 19 FLJ00132 ( 572 res) sh02007 ( 572) 89 23.8 21 FLJ00020 ( 1142 res) as00020 (1142) 93 24.7 22 KIAA0043 ( 731 res) ha01331 ( 731) 90 24.1 22 FLJ00115 ( 757 res) as00115 ( 757) 90 24.1 22 KIAA0521 ( 1050 res) hg01387 (1050) 92 24.5 23 KIAA0657 ( 1237 res) hk01859s1 (1237) 93 24.8 23 FLJ00007 ( 701 res) as00007 ( 701) 89 23.9 23 FLJ00034 ( 1343 res) as00034 (1343) 93 24.8 24 FLJ00221 ( 298 res) sj06160 ( 298) 83 22.6 24 KIAA0899 ( 939 res) hk09548s1 ( 939) 90 24.2 25 FLJ00252 ( 819 res) sj09394 ( 819) 89 24.0 26 KIAA0867 ( 568 res) hk06783 ( 568) 86 23.3 27 KIAA1983 ( 418 res) fk09737(revised) ( 418) 84 22.9 27 KIAA1076 ( 804 res) hj06779 ( 804) 88 23.8 28 KIAA1306 ( 1154 res) fh05845 (1154) 90 24.3 29 KIAA1004 ( 1163 res) hj01244 (1163) 90 24.3 29 KIAA1868 ( 463 res) fj22550 ( 463) 84 23.0 29 KIAA1715 ( 429 res) hh02382 ( 429) 83 22.8 31 FLJ00300 ( 283 res) sh04156 ( 283) 80 22.1 32 KIAA0239 ( 849 res) ha06313 ( 849) 87 23.7 32 KIAA0857 ( 733 res) hk06227 ( 733) 86 23.5 32 KIAA1142 ( 467 res) hh05864 ( 467) 83 22.8 33 KIAA1768 ( 1207 res) ph00672(revised) (1207) 89 24.2 33 KIAA0326 ( 927 res) hg00579 ( 927) 87 23.7 34 FLJ00243 ( 503 res) sj07676 ( 503) 83 22.9 34 FLJ00376 ( 931 res) sh07947 ( 931) 87 23.7 34 KIAA0616 ( 634 res) hg03623 ( 634) 84 23.1 36 KIAA0492 ( 167 res) hh01162 ( 167) 75 21.1 37 KIAA1810 ( 579 res) fk03376 ( 579) 83 22.9 37 KIAA0654 ( 1267 res) fh18335 (1267) 88 24.0 38 FLJ00353 ( 1766 res) sh01144 (1766) 90 24.5 38 KIAA0672 ( 824 res) hk02382 ( 824) 85 23.4 38 >>KIAA0466 ( 1214 res) pg00625 (1214 aa) initn: 286 init1: 249 opt: 310 Z-score: 251.0 bits: 56.0 E(): 8.8e-09 Smith-Waterman score: 314; 37.419% identity (61.935% similar) in 155 aa overlap (17-168:161-295) 10 20 30 40 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRGRQAPTSPPRMTVH :.:: ::..: : .:.: KIAA04 QARDAGEYECHTPSTDKQYFGSYSAKMNLVVIPDSLQTTAMP--------------QTLH 140 150 160 170 50 60 70 80 90 100 FLJ002 --EGQELALGCLARTSTQKHTHLAVSFGRS-VPEAPVGRSTLQEVVGIRSDLAVEAGAPY : . : : : . . : .:.::.:.. :. : : :: ::... :. ..... : KIAA04 RVEQDPLELTCEVASETIQHSHLSVAWLRQKVGEKPV------EVISLSRDFMLHSSSEY 180 190 200 210 220 230 110 120 130 140 150 160 FLJ002 AERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDPDGSWAQIAEKRAVLA :.: . ::.:: : : .:... : .: : ..: :::::::::::: ...::. : KIAA04 AQRQSLGEVRLDKLGRTTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYAMTRKRSEGA 240 250 260 270 280 290 170 180 190 200 210 FLJ002 HVDVQTLCKCHLYIPLWELGGTVSWWALWPQGVPDSHHLTPRNSSSTE :.:: KIAA04 VVNVQPTDKEFTVRLETEKRLHTVGEPVEFRCILEAQNVPDRYFAVSWAFNSSLIATMGP 300 310 320 330 340 350 >>KIAA1436 ( 924 res) hh15451 (924 aa) initn: 219 init1: 114 opt: 119 Z-score: 103.7 bits: 28.3 E(): 1.4 Smith-Waterman score: 272; 34.868% identity (61.842% similar) in 152 aa overlap (17-168:185-320) 10 20 30 40 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRGRQAPTSPPRMTVH :: : :.: :: .: : :: .... KIAA14 QPSDQGHYKCSTPSTDATVQGNYEDTVQVKVLADSLHV-----GPSAR--P--PPSLSLR 160 170 180 190 200 50 60 70 80 90 100 FLJ002 EGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVVGIRSDLAVEAGAPYAER ::. . : : : ... :::::. . : ..:. :: :... . . : : .: KIAA14 EGEPFELRCTAASASPLHTHLALLW--EVHRGPARRS----VLALTHEGRFHPGLGYEQR 210 220 230 240 250 110 120 130 140 150 160 FLJ002 LAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDPDGSWAQIAEKRAVLAHVD .:..:: :.: ::. :. : ..: :.:.: ..::: . .:.: .: :: . .: : KIAA14 YHSGDVRLDTVGSDAYRLSVSRALSADQGSYRCIVSEWIAE-QGNWQEIQEKAVEVATVV 260 270 280 290 300 310 170 180 190 200 210 FLJ002 VQTLCKCHLYIPLWELGGTVSWWALWPQGVPDSHHLTPRNSSSTE .: KIAA14 IQPSVLRAAVPKNVSVAEGKELDLTCNITTDRADDVRPEVTWSFSRMPDSTLPGSRVLAR 320 330 340 350 360 370 >>KIAA1949 ( 662 res) fj02913 (662 aa) initn: 106 init1: 71 opt: 107 Z-score: 96.1 bits: 26.4 E(): 3.7 Smith-Waterman score: 107; 27.103% identity (56.075% similar) in 107 aa overlap (4-105:525-628) 10 20 30 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRG : : : .:. : . :.:: :: KIAA19 DPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSVPPATPATPTSPAT--VDAAVPGAGK 500 510 520 530 540 550 40 50 60 70 80 FLJ002 RQAPTSPPRMTVHEGQELALGCLARTSTQKH-THLAVSFGRSVPEA----PVGRSTLQEV .. ::. ... .:. .:::. : ..: .: .::.... :. : :.:.:. KIAA19 KRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKISFSETALETTYQYPSESSVLEEL 560 570 580 590 600 610 90 100 110 120 130 140 FLJ002 VGIRSDLAVEAGAPYAERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDP : . .. . : :. KIAA19 -GPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGLRTKALIVDESCRR 620 630 640 650 660 >>KIAA0429 ( 666 res) hk07754 (666 aa) initn: 114 init1: 70 opt: 101 Z-score: 91.4 bits: 25.6 E(): 6.8 Smith-Waterman score: 101; 39.216% identity (62.745% similar) in 51 aa overlap (4-50:519-566) 10 20 30 FLJ002 QGLPAP-SPPSLQLFSPVLPDVLQVSAAPP-GP : : . : . . .:..::. : ::: :: KIAA04 GPAMVTPGVATIRRTPSTKPSVRRGTIGAGPIPIKTPVIPVKTPTVPDLPGVLPAPPDGP 490 500 510 520 530 540 40 50 60 70 80 FLJ002 --RGRQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVV ::...: :: .: :: . KIAA04 EERGEHSPESP---SVGEGPQGVTSMPSSMWSGQASVNPPLPGPKPSIPEEHRQAIPESE 550 560 570 580 590 600 >>KIAA0572 ( 1872 res) hh02391 (1872 aa) initn: 41 init1: 41 opt: 107 Z-score: 90.8 bits: 27.0 E(): 7.4 Smith-Waterman score: 107; 25.833% identity (47.500% similar) in 120 aa overlap (4-123:932-1041) 10 20 30 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRG :.: :: : : : :...:.:. : : KIAA05 VGGGRGEECGVEPDAPLSSLPQSLPAPAPSPVPLPPVLALTPSVAPSLFQLSVQPEPP-- 910 920 930 940 950 40 50 60 70 80 90 FLJ002 RQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVVGIRS : : : : .. : . . :. . . : : . : .: :. . KIAA05 ---PPEPVPMYSDEDLAQVVDELIQEALQRDCEEVGSAGAAYAAAALGVSN-----AAME 960 970 980 990 1000 1010 100 110 120 130 140 150 FLJ002 DLAVEAGAPYAERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDPDGSWA :: . : . ...:: :. .: .. : KIAA05 DLLTAATTGILRHIAAEEVSKERERREQERQRAEEERLKQERELVLSELSQGLAVELMER 1020 1030 1040 1050 1060 1070 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 129 init1: 83 opt: 100 Z-score: 87.9 bits: 25.7 E(): 11 Smith-Waterman score: 100; 32.941% identity (42.353% similar) in 85 aa overlap (4-82:958-1041) 10 20 30 FLJ002 QGLPAPSPPSLQLFSPVLPDV---LQVSAAPPG : : :: : : :: :.. :: KIAA18 KKKGKEAGPGAGLPPPRAPALPSEARAPPPPPPPPPHPPLPPPPLPPPPLPLRLPPLPPP 930 940 950 960 970 980 40 50 60 70 80 FLJ002 PRGRQAPTSPPRMT--VHEGQELALGCLARTSTQKHT-HLAVSFGRSVPEAPVGRSTLQE : : : :: . . : .: ::: : .::. : : : .: KIAA18 PLPRPHPPPPPPLPPLLPPPQTRTLPA-ARTMRQPPPPRLALPRRRRSPPRPPSRPARRG 990 1000 1010 1020 1030 1040 90 100 110 120 130 140 FLJ002 VVGIRSDLAVEAGAPYAERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQD KIAA18 PRPTPQARRRPRPSPRRLLRSPHSLCSPRLRPGPRADPRRERASTSPPPRSWPSGSACRP 1050 1060 1070 1080 1090 1100 >>KIAA0775 ( 639 res) hk05255 (639 aa) initn: 115 init1: 59 opt: 96 Z-score: 87.7 bits: 24.8 E(): 11 Smith-Waterman score: 96; 26.351% identity (51.351% similar) in 148 aa overlap (5-141:424-568) 10 20 30 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRGR .: ::: : :: : . :.:. : KIAA07 RRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQ--SPSPQRRSPVPPSCPAPQPR 400 410 420 430 440 450 40 50 60 70 80 FLJ002 QAPTSPP-RMTVHE-------GQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQ : :: . :. : .... : .: : .. .. :. : : : . .:: KIAA07 PPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQAEAATLP 460 470 480 490 500 510 90 100 110 120 130 140 FLJ002 EVVGIRSDLAVEAGAPYAERLA-AG-ELRLGKEGTDRYRMVVGGAQAG-DAGTYHCTAAE . . :.: : : . : : : .::. :. ... . .: . . ..:: .:.. KIAA07 KPRAYGSEL-YGPGRPLSPRRAFEGIRLRFEKQPSEEDEWAVPTSPPSPEVGTIRCASFC 520 530 540 550 560 570 150 160 170 180 190 200 FLJ002 WIQDPDGSWAQIAEKRAVLAHVDVQTLCKCHLYIPLWELGGTVSWWALWPQGVPDSHHLT KIAA07 AGFPIPESPAATAYAHAEHAQSWPSINLLMETVGSDIRSCPLCQLGFPVGYPDDALIKHI 580 590 600 610 620 630 >>KIAA1986 ( 334 res) pg00636 (334 aa) initn: 91 init1: 91 opt: 91 Z-score: 87.1 bits: 23.8 E(): 12 Smith-Waterman score: 91; 35.897% identity (48.718% similar) in 39 aa overlap (4-42:194-232) 10 20 30 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPPGPRG :.: :: :: :: . ... : KIAA19 SSPGRGHKVFVVTRVESPPERAEPPASPTPPSPPPPPSPPASPSLPPAGAIDTRDTGSSE 170 180 190 200 210 220 40 50 60 70 80 90 FLJ002 RQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVVGIRS : : ::: KIAA19 PQPPPEPPRSGPPLPNGLKPEFALALPPEPPPGPEVKGGSCGLEHGERGPRAGVEGPWVL 230 240 250 260 270 280 >>KIAA0442 ( 1266 res) hh03913 (1266 aa) initn: 58 init1: 58 opt: 99 Z-score: 86.6 bits: 25.6 E(): 13 Smith-Waterman score: 99; 40.909% identity (61.364% similar) in 44 aa overlap (1-41:335-377) 10 20 FLJ002 QGLPAP-SPPSLQLFSPVLPDVLQVSAAPP : .: : . :.:. :: ::..: . ::: KIAA04 LERSQEKSQDCCKEPIFEPVVLKDPCPQVAQPIPQPQTEPQLRAPSPD-PDLVQRTEAPP 310 320 330 340 350 360 30 40 50 60 70 80 FLJ002 GPR--GRQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQE : . : : .:: KIAA04 QPPPLSTQPPQGPPEAQLQPAPQPQVQRPPRPQSPTQLLHQNLPPVQAHPSAQSLSQPLS 370 380 390 400 410 420 >>KIAA0751 ( 1200 res) hk04424 (1200 aa) initn: 102 init1: 59 opt: 98 Z-score: 86.1 bits: 25.5 E(): 14 Smith-Waterman score: 98; 30.986% identity (53.521% similar) in 71 aa overlap (2-70:915-982) 10 20 FLJ002 QGLPAPSPPSLQLFSPVLPDVLQVSAAPP-- : :: :.:. : .: .. : KIAA07 RPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVA 890 900 910 920 930 940 30 40 50 60 70 80 FLJ002 GPRGRQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVV : :::: : ::. :. . : : :...:. :. ... KIAA07 GRRGRQLPQLPPKGTLDRK---AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGS 950 960 970 980 990 1000 90 100 110 120 130 140 FLJ002 GIRSDLAVEAGAPYAERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDPD KIAA07 MNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQL 1010 1020 1030 1040 1050 1060 211 residues in 1 query sequences 2210783 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:41 2009 done: Fri Feb 27 10:50:42 2009 Total Scan time: 0.380 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]