# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh00274.fasta.huge -Q ../query/FLJ00272.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00272, 165 aa vs ./tmplib.10216 library 2210829 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6139+/-0.00414; mu= 12.9043+/- 0.280 mean_var=96.2848+/-20.768, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.130706 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0989 ( 859 res) hk05377 ( 859) 115 31.3 0.13 KIAA0689 ( 547 res) hk03417 ( 547) 96 27.5 1.2 FLJ00101 ( 294 res) as00101 ( 294) 85 25.0 3.4 KIAA1824 ( 958 res) fh17057 ( 958) 87 26.1 5.4 KIAA0401 ( 344 res) hg01095 ( 344) 80 24.2 7.3 KIAA0318 ( 1106 res) hg00364 (1106) 85 25.8 7.6 KIAA1677 ( 521 res) fh18965 ( 521) 81 24.6 8.2 KIAA0291 ( 1024 res) fh25236 (1024) 84 25.6 8.3 KIAA0616 ( 634 res) hg03623 ( 634) 81 24.7 9.2 KIAA0246 ( 2589 res) ef02679 (2589) 87 26.7 9.8 KIAA0208 ( 748 res) ha02713 ( 748) 81 24.8 10 KIAA1312 ( 1471 res) fh11767 (1471) 84 25.8 10 KIAA1814 ( 1285 res) ph00952 (1285) 83 25.5 11 KIAA0023 ( 2111 res) ha00512 (2111) 85 26.2 11 KIAA2036 ( 1322 res) pf06513 (1322) 82 25.3 13 KIAA0512 ( 710 res) hf00239 ( 710) 79 24.4 13 KIAA0431 ( 719 res) hh01739 ( 719) 79 24.4 13 KIAA0744 ( 619 res) hk04110 ( 619) 78 24.2 13 KIAA0492 ( 167 res) hh01162 ( 167) 71 22.1 15 KIAA0170 ( 2090 res) ha02399 (2090) 82 25.6 17 FLJ00403 ( 225 res) sj07657 ( 225) 71 22.3 18 KIAA0282 ( 711 res) ha06845s1 ( 711) 76 23.9 19 KIAA1972 ( 576 res) fk09334 ( 576) 75 23.5 19 KIAA1562 ( 1136 res) fh20205 (1136) 78 24.5 19 KIAA1426 ( 1066 res) fg04231s1 (1066) 77 24.3 21 KIAA1185 ( 403 res) hg02311a ( 403) 72 22.8 23 KIAA1025 ( 1917 res) fg00971s1 (1917) 79 25.0 23 KIAA0254 ( 1009 res) ha07011 (1009) 76 24.1 23 KIAA1522 ( 1044 res) fh14706(revised) (1044) 76 24.1 24 KIAA0121 ( 312 res) fk13569 ( 312) 70 22.3 25 FLJ00248 ( 501 res) sj08681 ( 501) 72 22.9 26 KIAA1317 ( 435 res) fh13117 ( 435) 71 22.6 27 KIAA1714 ( 1175 res) fj19060y1 (1175) 75 24.0 29 KIAA1632 ( 1457 res) fh19068(revised) (1457) 75 24.1 33 KIAA0295 ( 981 res) hf00226 ( 981) 73 23.5 34 KIAA1878 ( 453 res) pj01649 ( 453) 69 22.3 36 FLJ00043 ( 1415 res) as00043 (1415) 74 23.9 37 KIAA1645 ( 386 res) fg04139 ( 386) 68 22.0 37 KIAA1773 ( 3434 res) hj00752s2 (3434) 78 25.1 37 KIAA1932 ( 795 res) fj14525 ( 795) 71 23.0 39 KIAA0535 ( 1047 res) hg03847 (1047) 72 23.3 40 KIAA1014 ( 1050 res) hk02388s2 (1050) 72 23.3 40 KIAA0722 ( 1066 res) hk02030s1 (1066) 72 23.3 41 KIAA0651 ( 1114 res) sj09778 (1114) 72 23.4 42 KIAA0298 ( 901 res) hf00341(revised) ( 901) 71 23.1 42 KIAA0099 ( 1175 res) hk05583 (1175) 72 23.4 43 FLJ00053 ( 443 res) as00053 ( 443) 67 21.9 46 KIAA0862 ( 584 res) hk06532 ( 584) 68 22.2 47 KIAA0306 ( 1451 res) hg00063 (1451) 72 23.5 49 KIAA0771 ( 948 res) hk05113 ( 948) 70 22.9 49 >>KIAA0989 ( 859 res) hk05377 (859 aa) initn: 121 init1: 46 opt: 115 Z-score: 122.3 bits: 31.3 E(): 0.13 Smith-Waterman score: 115; 26.994% identity (49.080% similar) in 163 aa overlap (1-159:119-272) 10 20 30 FLJ002 KGGQGRVGGVGSQAAHLTCEGALGGTVGEV .:: : .::.:: : : . . : . KIAA09 TVLHRLIQEQLRYGNLTETRTLLAIQQQALRGGAG-TGGTGSPQASLEILAPEDSQVLQQ 90 100 110 120 130 140 40 50 60 70 80 FLJ002 ASHWSLGLAPSEGQQDHVAGKELFRAESQAPKVGALSHPIEDTRP---YGVPMGRGSHLF :.. .: ..:.: . :.: : :. : :... : . . :.. KIAA09 ATRQEPQGQEHQGGENHLAENTLYRLCPQ-PSKGEELPTYEEAKAHSQYYAAQQAGTRPH 150 160 170 180 190 200 90 100 110 120 130 140 FLJ002 SGSGRLTRTHAEMSKEATEAENAFRNNPKFQRLVTPSASCFATTCGVERQGREAAPCPSS .:. : : :.. :: .:.. . : : ..::.: .: :: KIAA09 AGD-RDPRGAPGGSRRQDEALRELRHGH------VRSLSERLLQLSLERNGARAPSHMSS 210 220 230 240 250 150 160 FLJ002 SH-FPPATRNWEGVGGGLR :: :: .:: .: KIAA09 SHSFPQLARNQQGPPLRGPPAEGPESRGPPPQYPHVVLAHETTTAVTDPRYRARGSPHFQ 260 270 280 290 300 310 >>KIAA0689 ( 547 res) hk03417 (547 aa) initn: 54 init1: 54 opt: 96 Z-score: 105.0 bits: 27.5 E(): 1.2 Smith-Waterman score: 96; 28.477% identity (52.318% similar) in 151 aa overlap (21-161:271-410) 10 20 30 40 FLJ002 KGGQGRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQ-QDHVA :.: ...::: . :: : .: . :.. KIAA06 PRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLG-PPHQGPPMHHAS 250 260 270 280 290 50 60 70 80 90 100 FLJ002 GKELFRAESQAPKVGALSHP-IEDTRPYGVPM--GRGSHLFSGSGRLTRTHAEMSKEATE :.. :. . : :. : . .: : :: :: . . .:: .:. : .: : KIAA06 GHDTRGPSSHEMRGGPLGDPRLLIGEPRG-PMIDQRGLPMDGRGGRDSRA---METRAME 300 310 320 330 340 350 110 120 130 140 150 160 FLJ002 AENAFRNNPKFQRLVTPSASCFATTCGVERQGREA------APCPSSSHFPPATRNWEGV .: .... .: . .: : :.: .: .: .: ::: : : . .: KIAA06 TE-VLETRVMERRGME---TCAMETRGMEARGMDARGLEMRGPVPSSRG--PMTGGIQGP 360 370 380 390 400 FLJ002 GGGLR : KIAA06 GPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSI 410 420 430 440 450 460 >>FLJ00101 ( 294 res) as00101 (294 aa) initn: 85 init1: 85 opt: 85 Z-score: 96.7 bits: 25.0 E(): 3.4 Smith-Waterman score: 85; 34.043% identity (55.319% similar) in 47 aa overlap (39-85:241-287) 10 20 30 40 50 60 FLJ002 GVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQDHVAGKELFRAESQAPKVGALSH :: . .:: .: :: .. . : .:. . FLJ001 RGYNYRAEVRKLIPQLQVLDEVPAAHTGPPAPPRLSQDWLAVKEAIKKGNGLPPLGTAAA 220 230 240 250 260 270 70 80 90 100 110 120 FLJ002 PIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAENAFRNNPKFQRLVTPSASCF : : .: ::: : FLJ001 PGGPTAESQLPPGRGPHPRLLRNG 280 290 >>KIAA1824 ( 958 res) fh17057 (958 aa) initn: 101 init1: 78 opt: 87 Z-score: 93.2 bits: 26.1 E(): 5.4 Smith-Waterman score: 87; 31.959% identity (53.608% similar) in 97 aa overlap (25-118:760-854) 10 20 30 40 50 FLJ002 KGGQGRVGGVGSQAAHLTCEGALGGTVGEVASH-WSLGLAPSEGQQDH-VAGKE : : .:: :. .: .:: .:. KIAA18 IAMAQRNQDLPPEGCSKDTFKEETPRTPSNGPGHEHSSHAWAE--VPEGTSQDTGNSGSV 730 740 750 760 770 780 60 70 80 90 100 110 FLJ002 LFRAESQAPKVGALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEAT-EAENAF :.. . ::: :. :: . :: : :::: ::... :.: . :. : KIAA18 EHPFETKKLNGKALSSRAEEPPSPPVPKASGSTLNSGSGNCPRTQSDDSEERSLETICAN 790 800 810 820 830 840 120 130 140 150 160 FLJ002 RNNPKFQRLVTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR .:: ... KIAA18 HNNGRLHPRPPHPHNNGQNLGELEVVAYSSPGHSDTDRDNSSLTGTLLHKDCCGSEMACE 850 860 870 880 890 900 >>KIAA0401 ( 344 res) hg01095 (344 aa) initn: 48 init1: 48 opt: 80 Z-score: 90.9 bits: 24.2 E(): 7.3 Smith-Waterman score: 80; 32.308% identity (58.462% similar) in 65 aa overlap (33-90:154-214) 10 20 30 40 50 60 FLJ002 GQGRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQ--DHVAGKELFRAESQA .: :: :.:::: .: .:. .:.. . KIAA04 FSSGESPAIVPDKLSSFGASCLAPSHFTDGQW--GLFPGEGQQAASHSGGR--LRGKPWS 130 140 150 160 170 70 80 90 100 110 FLJ002 P-KVG----ALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAENAFRNNP : : : ::. : .:... : . ..:: KIAA04 PCKFGNSTSALAGPSLTEKPWALGAGDFNSALKGSPGFQDKLWNPMKGEEGRIPAAGASQ 180 190 200 210 220 230 120 130 140 150 160 FLJ002 KFQRLVTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR KIAA04 LVFYQHKNLNQPNHGLALWEAKMKQLAERARARQEEAARLGLGQQEAKLYGKKRKWGGTV 240 250 260 270 280 290 >>KIAA0318 ( 1106 res) hg00364 (1106 aa) initn: 81 init1: 81 opt: 85 Z-score: 90.5 bits: 25.8 E(): 7.6 Smith-Waterman score: 85; 22.549% identity (45.098% similar) in 102 aa overlap (28-129:127-228) 10 20 30 40 50 FLJ002 KGGQGRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQDHVAGKELFRAE : ... ... :::. . . : .. KIAA03 KCRTQSEQFNLLSRDLEKFRQHAGKIDLLGGSAVAPLDISTAPSKPFPQFMNGLATSLGK 100 110 120 130 140 150 60 70 80 90 100 110 FLJ002 SQAPKVGALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAENAFRNNPKF .: .:. : : :: : : : . :.:. . . .. :: .: . KIAA03 GQESAIGGSSAIGEYIRPLPQPGDRPEPLSAKPTFLSRSGSARCRSESDMENERNSNTSK 160 170 180 190 200 210 120 130 140 150 160 FLJ002 QRLVTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR :: : : KIAA03 QRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 220 230 240 250 260 270 >>KIAA1677 ( 521 res) fh18965 (521 aa) initn: 30 init1: 30 opt: 81 Z-score: 90.0 bits: 24.6 E(): 8.2 Smith-Waterman score: 81; 25.581% identity (62.791% similar) in 43 aa overlap (117-157:397-439) 90 100 110 120 130 140 FLJ002 FSGSGRLTRTHAEMSKEATEAENAFRNNPKFQRLVTPSAS--CFATTCGVERQGREAAPC :..... ... :. .: . : . :. : KIAA16 KEGTIEQRTRRTQVVTNCWENKSKMNYARCFHKMISYNGKLYVFGGVCVILRASFESQGC 370 380 390 400 410 420 150 160 FLJ002 PSSSHFPPATRNWEGVGGGLR ::. . : : .: KIAA16 PSTEVYNPETDQWTILASMPIGRSGHGVTVLDKQIMVLGGLCYNGHYSDSILTFDPDENK 430 440 450 460 470 480 >>KIAA0291 ( 1024 res) fh25236 (1024 aa) initn: 60 init1: 37 opt: 84 Z-score: 89.9 bits: 25.6 E(): 8.3 Smith-Waterman score: 84; 29.474% identity (56.842% similar) in 95 aa overlap (74-164:16-107) 50 60 70 80 90 100 FLJ002 QQDHVAGKELFRAESQAPKVGALSHPIEDTRPYGV-PMGRGSHLFSGSGRLTRTHAEMSK .: :. : :::.. : :: . : :. KIAA02 PALTLVHLPSGTAMQKPSGLKPPGRGGKHSSPMGRTSTGSA--SS 10 20 30 40 110 120 130 140 150 FLJ002 EATEAENAFRNNPKFQRLVTPSASCFATTCGVERQGREAAPCPSS--SHFPPATRNW-EG :. : .. ...: .. ::.: :.. . :. : .:: .. . : . : : .: KIAA02 SAAVAASSKEGSPLHKQSSGPSSSP-AAAAAPEKPGPKAAEVGDDFLGDFVVGERVWVNG 50 60 70 80 90 100 160 FLJ002 VGGGLR : :. KIAA02 VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP 110 120 130 140 150 160 >>KIAA0616 ( 634 res) hg03623 (634 aa) initn: 69 init1: 45 opt: 81 Z-score: 89.1 bits: 24.7 E(): 9.2 Smith-Waterman score: 81; 38.462% identity (69.231% similar) in 26 aa overlap (134-157:121-146) 110 120 130 140 150 160 FLJ002 ATEAENAFRNNPKFQRLVTPSASCFATTCGVERQGREAAPCPSSSHF--PPATRNWEGVG :...::.: :: .. . ::: .: KIAA06 TSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTN 100 110 120 130 140 150 FLJ002 GGLR KIAA06 SDSALHQSTMTPTQPESFSSGSQDVHQKRVLLLTVPGMEETTSEADKNLSKQAWDTKKTG 160 170 180 190 200 210 >>KIAA0246 ( 2589 res) ef02679 (2589 aa) initn: 84 init1: 47 opt: 87 Z-score: 88.6 bits: 26.7 E(): 9.8 Smith-Waterman score: 90; 27.619% identity (47.619% similar) in 105 aa overlap (53-145:1238-1341) 30 40 50 60 70 80 FLJ002 LGGTVGEVASHWSLGLAPSEGQQDHVAGKELFRAESQAPKVG--ALSHPIEDTRPYGVPM .: .: :.:. : :. .. : . KIAA02 HHVVLGEALSMETLRKGGHRNSLLGPAHWIVFYNHSGQPEVNHVPLEGPMLEA-PGRSLI 1210 1220 1230 1240 1250 1260 90 100 110 120 130 FLJ002 GRGSHLFSGSGRLTRTHAEMSKEA-TEAENAFRNNPKFQRLVTPSASC-------FATTC : .. : ::.: ..::: .: .. :: . :: :: :: :. : KIAA02 GLSGVLTVGSSRCLHSHAEALREKCVNCTRRFRCTQGFQLQDTPRKSCVYRSGFSFSRGC 1270 1280 1290 1300 1310 1320 140 150 160 FLJ002 GVERQGREAAP--CPSSSHFPPATRNWEGVGGGLR . . .: :: KIAA02 SYTCAKKIQVPDCCPGFFGTLCEPCPGGLGGVCSGHGQCQDRFLGSGECHCHEGFHGTAC 1330 1340 1350 1360 1370 1380 165 residues in 1 query sequences 2210829 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:42 2009 done: Fri Feb 27 10:50:42 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]