# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh00274.fasta.nr -Q ../query/FLJ00272.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00272, 165 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827224 sequences Expectation_n fit: rho(ln(x))= 4.9861+/-0.000183; mu= 8.1959+/- 0.010 mean_var=69.7394+/-13.435, 0's: 40 Z-trim: 42 B-trim: 20 in 1/65 Lambda= 0.153580 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748482|dbj|BAC03378.1| FLJ00272 protein [Homo ( 165) 1137 260.0 1.1e-67 gi|119574220|gb|EAW53835.1| hypothetical protein L ( 321) 386 93.9 2.3e-17 >>gi|21748482|dbj|BAC03378.1| FLJ00272 protein [Homo sap (165 aa) initn: 1137 init1: 1137 opt: 1137 Z-score: 1371.2 bits: 260.0 E(): 1.1e-67 Smith-Waterman score: 1137; 100.000% identity (100.000% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 FLJ002 KGGQGRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQDHVAGKELFRAESQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KGGQGRVGGVGSQAAHLTCEGALGGTVGEVASHWSLGLAPSEGQQDHVAGKELFRAESQA 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 PKVGALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAENAFRNNPKFQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PKVGALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAENAFRNNPKFQRL 70 80 90 100 110 120 130 140 150 160 FLJ002 VTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR ::::::::::::::::::::::::::::::::::::::::::::: gi|217 VTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR 130 140 150 160 >>gi|119574220|gb|EAW53835.1| hypothetical protein LOC85 (321 aa) initn: 386 init1: 386 opt: 386 Z-score: 467.9 bits: 93.9 E(): 2.3e-17 Smith-Waterman score: 386; 100.000% identity (100.000% similar) in 58 aa overlap (80-137:1-58) 50 60 70 80 90 100 FLJ002 GKELFRAESQAPKVGALSHPIEDTRPYGVPMGRGSHLFSGSGRLTRTHAEMSKEATEAEN :::::::::::::::::::::::::::::: gi|119 MGRGSHLFSGSGRLTRTHAEMSKEATEAEN 10 20 30 110 120 130 140 150 160 FLJ002 AFRNNPKFQRLVTPSASCFATTCGVERQGREAAPCPSSSHFPPATRNWEGVGGGLR :::::::::::::::::::::::::::: gi|119 AFRNNPKFQRLVTPSASCFATTCGVERQVGHCHPLVVQAAHEQNQVLNTNSRYLHDNIVD 40 50 60 70 80 90 165 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 05:07:05 2009 done: Sat Feb 28 05:11:16 2009 Total Scan time: 609.650 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]