# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh00368.fasta.huge -Q ../query/FLJ00273.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00273, 144 aa vs ./tmplib.10216 library 2210850 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.0069+/-0.0048; mu= 5.6626+/- 0.324 mean_var=139.8487+/-30.644, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.108454 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1359 ( 517 res) fj02042 ( 517) 106 26.8 1.5 KIAA1116 ( 1330 res) hk02574(revised) (1330) 111 28.1 1.6 KIAA0613 ( 734 res) hg01088b ( 734) 105 26.9 2.1 KIAA0059 ( 724 res) ha00949s1 ( 724) 99 25.9 4 KIAA2035 ( 1135 res) ff09201 (1135) 96 25.7 7.5 KIAA0309 ( 3053 res) hg00096s1 (3053) 101 27.0 8.3 KIAA0240 ( 1087 res) fg03390 (1087) 94 25.3 9.1 KIAA0940 ( 699 res) hh04894 ( 699) 91 24.6 9.4 KIAA0183 ( 1111 res) ha02726 (1111) 93 25.2 10 KIAA0250 ( 1122 res) ha02790 (1122) 93 25.2 10 KIAA1683 ( 832 res) fh24307 ( 832) 91 24.7 11 KIAA1417 ( 1379 res) fh14782 (1379) 93 25.3 12 KIAA1236 ( 1840 res) pg00641 (1840) 93 25.4 14 FLJ00280 ( 440 res) sh01728 ( 440) 84 23.3 15 KIAA0924 ( 617 res) hh02883 ( 617) 86 23.8 15 KIAA1439 ( 561 res) hg01641b ( 561) 85 23.6 16 KIAA0561 ( 1308 res) hh01676 (1308) 90 24.8 16 KIAA1414 ( 1586 res) fh14368(revised) (1586) 91 25.1 16 FLJ00066 ( 162 res) as00066 ( 162) 77 21.7 17 KIAA1477 ( 870 res) fj04927 ( 870) 87 24.1 17 KIAA1148 ( 543 res) bg00390 ( 543) 84 23.4 17 KIAA0913 ( 1881 res) fh07519s2 (1881) 91 25.1 18 KIAA1190 ( 174 res) hg03443a ( 174) 76 21.6 19 FLJ00349 ( 146 res) sg00018 ( 146) 74 21.2 21 FLJ00345 ( 339 res) sf00014 ( 339) 79 22.4 22 KIAA1557 ( 806 res) fh18848 ( 806) 84 23.6 22 KIAA2032 ( 952 res) eh00720 ( 952) 85 23.9 22 KIAA0434 ( 1571 res) hh02165 (1571) 88 24.6 22 FLJ00193 ( 491 res) sj02629 ( 491) 81 22.9 22 KIAA1283 ( 1884 res) hh05359(revised) (1884) 89 24.8 22 KIAA1802 ( 821 res) fj21631 ( 821) 84 23.6 22 KIAA1224 ( 997 res) fh02652 ( 997) 85 23.9 23 KIAA1203 ( 727 res) fg03361 ( 727) 83 23.4 23 KIAA0272 ( 759 res) ha06802s1 ( 759) 83 23.4 24 KIAA0269 ( 567 res) ha06751 ( 567) 80 22.8 27 KIAA0021 ( 703 res) ha00117(revised) ( 703) 81 23.1 28 KIAA0595 ( 1666 res) hj02929s1 (1666) 86 24.3 28 KIAA1772 ( 752 res) pj02583(revised) ( 752) 81 23.1 29 KIAA0344 ( 2066 res) hg01568 (2066) 87 24.6 29 KIAA1030 ( 763 res) fh00432 ( 763) 81 23.1 29 KIAA0904 ( 1535 res) ha00554 (1535) 85 24.1 30 KIAA1668 ( 791 res) fh11717 ( 791) 81 23.1 30 KIAA1076 ( 804 res) hj06779 ( 804) 81 23.2 30 KIAA0164 ( 929 res) ha02373 ( 929) 81 23.2 33 KIAA1887 ( 967 res) fk02232 ( 967) 81 23.2 34 KIAA0737 ( 629 res) hk03869 ( 629) 78 22.6 36 KIAA1636 ( 1864 res) ff02660 (1864) 84 24.0 38 FLJ00236 ( 702 res) sj07289 ( 702) 78 22.6 38 KIAA0716 ( 1388 res) ah04178 (1388) 82 23.6 39 KIAA0495 ( 209 res) hg00106 ( 209) 70 20.8 41 >>KIAA1359 ( 517 res) fj02042 (517 aa) initn: 115 init1: 65 opt: 106 Z-score: 103.1 bits: 26.8 E(): 1.5 Smith-Waterman score: 106; 29.167% identity (54.167% similar) in 96 aa overlap (16-108:164-253) 10 20 30 40 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASHLHSSSSSVNGHY : : ..: ::.:. . :. ::.: .: . KIAA13 CTDDSSEEAKTLTMDILTLAHTSTEAKGLSSESSASSDSPHPVITPSRASESSASSDGPH 140 150 160 170 180 190 50 60 70 80 90 100 FLJ002 PVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPMTSHVVSAVI- :: . : .:. . : :.. .. : .: : : .: :.. : . :: KIAA13 PV-----ITPSRASESSASSDGLHPVITPSRASESS-ASSDGPHPVITPSRASESSASSD 200 210 220 230 240 110 120 130 140 FLJ002 --HPAVQSQVTHLALHHIPRAPGMKLSQPPKLPPSLNLPNHE ::.. KIAA13 GPHPVITPSRASESSASSDGPHPVITPSWSPGSDVTLLAEALVTVTNIEVINCSITEIET 250 260 270 280 290 300 >>KIAA1116 ( 1330 res) hk02574(revised) (1330 aa) initn: 124 init1: 57 opt: 111 Z-score: 102.5 bits: 28.1 E(): 1.6 Smith-Waterman score: 111; 23.944% identity (53.521% similar) in 142 aa overlap (12-143:835-975) 10 20 30 40 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNP-TCVASHLHSSSSS :.. : . : :: . :. : .. . KIAA11 LATSALPAGNVFNAPTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPN 810 820 830 840 850 860 50 60 70 80 90 FLJ002 VNGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGY----SPSLTSRAYSHSPGPTFIPMT :... .: . :.:.: : :. :: :: :.. . . . : . . KIAA11 VTSNSGILGVQRPNVSSNSEILGVRPSNVSSSSGIIAAQPPNILNNSGILGIQPPSVSNS 870 880 890 900 910 920 100 110 120 130 140 FLJ002 SHVVSAVIHPAVQSQVTHLALH--HIPRAPGMKLSQPPKLP---PSLNLPNHE : ... :. : . .. .... ..: .::. .::: : : :..::. KIAA11 SGLLG-VLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGPQNLPPLSIPNQRMPTMPML 930 940 950 960 970 980 KIAA11 DIRPGLIPQAPGPRFPLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFL 990 1000 1010 1020 1030 1040 >>KIAA0613 ( 734 res) hg01088b (734 aa) initn: 111 init1: 52 opt: 105 Z-score: 100.5 bits: 26.9 E(): 2.1 Smith-Waterman score: 106; 27.344% identity (52.344% similar) in 128 aa overlap (19-137:371-493) 10 20 30 40 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPN---PTCVASHL-HSSSSSVNGH ...:::: . :.: .: . .. . KIAA06 PPLATAAAHTAIASASTTAPASSPADSPRPQASSYSPAVAASSAPATHTSYSEGPAAPAP 350 360 370 380 390 400 50 60 70 80 90 FLJ002 YPVLIWR-----SVFPHSTSRIHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPMTSHV : .. ::. . .. ::: . : . :.:: . ::. ::.:.. : : : KIAA06 KPRVVTTASIRPSVYQPVPASTYSPSPGANYSPTPYTPS-PAPAYTPSPAPAYTP--SPV 410 420 430 440 450 100 110 120 130 140 FLJ002 VSAVIHPAVQSQVTHLALHHIPRAPGMKLSQPPKLPPSLNLPNHE . . :: . . : .. : ::.. : : : : KIAA06 PTYTPSPA-PAYTPSPAPNYNP-APSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTS 460 470 480 490 500 510 KIAA06 ISKQTLPRGGPAYTPAGPQVPPLARGTVQRAERFPASSRTPLCGHCNNVIRGPFLVAMGR 520 530 540 550 560 570 >>KIAA0059 ( 724 res) ha00949s1 (724 aa) initn: 64 init1: 42 opt: 99 Z-score: 95.5 bits: 25.9 E(): 4 Smith-Waterman score: 99; 27.338% identity (48.201% similar) in 139 aa overlap (22-144:375-511) 10 20 30 40 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASH------LHSSSSSVNGHY . ::.:. . . .: :.:. . . KIAA00 ERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRDRMIHRSTSQGSINS 350 360 370 380 390 400 50 60 70 80 90 FLJ002 PVLIWRSVFPHSTSRI--HGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFI--PMTSHV-- :: .: : .::: : : :: . : :: . : : :. ::. : :: KIAA00 PVYSRHSYTP-TTSRSPQHFHRPGNEPS-SGRNSPLPYRPDSRPLTPTYAQAPKHFHVPD 410 420 430 440 450 460 100 110 120 130 140 FLJ002 --VSAVIHPAVQSQVTHLALHHIPRAPGMKLSQPP--KLPPSLNLPNHE .. .: . .: . :: . .:.:. : . : . :. : KIAA00 QGINIYRKPPIYKQHAALAAQSKSSEDIIKFSKFPAAQAPDPSETPEIETDHWPGPPSFA 470 480 490 500 510 520 KIAA00 VIGPDMKRRSSGREEDDEELLRRRQLQEEQLMKLNSGLGQLILKEEMEKESRERSSLLAS 530 540 550 560 570 580 >>KIAA2035 ( 1135 res) ff09201 (1135 aa) initn: 90 init1: 60 opt: 96 Z-score: 90.7 bits: 25.7 E(): 7.5 Smith-Waterman score: 100; 34.247% identity (53.425% similar) in 73 aa overlap (66-136:406-466) 40 50 60 70 80 90 FLJ002 SSSSSVNGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPM : :..: : . . : . : .:::. : KIAA20 FEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGS-SPHPQHIYSSGSSPGPGPN---M 380 390 400 410 420 430 100 110 120 130 140 FLJ002 TSHVVSAVIHPAVQSQVTHLALHHIPRA--PGMKLSQPPKLPPSLNLPNHE .. : :.::. . :: : : ::. . : : ::: KIAA20 SQGHSSPVMHPGSPG-------HH-PCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQ 440 450 460 470 480 KIAA20 PDTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEF 490 500 510 520 530 540 >>KIAA0309 ( 3053 res) hg00096s1 (3053 aa) initn: 113 init1: 73 opt: 101 Z-score: 89.9 bits: 27.0 E(): 8.3 Smith-Waterman score: 105; 31.776% identity (51.402% similar) in 107 aa overlap (37-141:1339-1433) 10 20 30 40 50 60 FLJ002 RFAMRHSVCSISRVDSYSPNPTCVASHLHSSSSSVNGHYPVLIWRSVFPHSTSRIHGHSP :::.. :: :.:. : :. : : KIAA03 AAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGH-PLLLA----PTSS-----HVP 1310 1320 1330 1340 1350 70 80 90 100 110 120 FLJ002 GFKSSVS-GYSPSLTSRAYSHSPGPTFIPMTSHVVSAVIHPAVQSQVTHLALHHIPRA-P :..:.:. . :: :. . :: :. : . . .... :: .: :: : : : KIAA03 GLNSTVAPACSPVLVPASALASPFPS-APNPAPAQASLLAPA-SSASQALATPLAPMAAP 1360 1370 1380 1390 1400 1410 130 140 FLJ002 GMKLSQPPKLPPSLNLPNHE . : :: :: KIAA03 QTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTP 1420 1430 1440 1450 1460 1470 >>KIAA0240 ( 1087 res) fg03390 (1087 aa) initn: 113 init1: 52 opt: 94 Z-score: 89.2 bits: 25.3 E(): 9.1 Smith-Waterman score: 95; 26.400% identity (52.800% similar) in 125 aa overlap (12-135:479-586) 10 20 30 40 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASHLHSSSSSV : : . . . : :: .:. :.: . : KIAA02 HVMLNRNSSNMLRTNQPYTGPMLNNQNTAVHLVSGQTFAASGSP---VIAN--HASPQLV 450 460 470 480 490 500 50 60 70 80 90 100 FLJ002 NGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPSLTSR-AYSHSPGPTFIPMTSHVV .:..:. ... . ::: .:::: :.... . . ::. .: .: . KIAA02 GGQMPL-------QQASPTVLHLSPG-QSSVSQGRPGFATMPSVTSMSGPSRFPAVSSAS 510 520 530 540 550 110 120 130 140 FLJ002 SAVIHPAVQSQVTHLALHHIPRAPGMKLSQPPKLPPSLNLPNHE .: ::.. : : . : .:.:: . : KIAA02 TA--HPSLGSAVQSGSSGS--NFTGDQLTQPNRTPVPVSVSHRLPVSSSKSTSTFSNTPG 560 570 580 590 600 610 KIAA02 TGTQQQFFCQAQKKCLNQTSPISAPKTTDGLRQAQIPGLLSTTLPGQDSGSKVISASLGT 620 630 640 650 660 670 >>KIAA0940 ( 699 res) hh04894 (699 aa) initn: 68 init1: 68 opt: 91 Z-score: 88.9 bits: 24.6 E(): 9.4 Smith-Waterman score: 91; 27.586% identity (56.322% similar) in 87 aa overlap (55-141:31-111) 30 40 50 60 70 80 FLJ002 PNPTCVASHLHSSSSSVNGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPSLTSRAY :.. .: . ..: .:::: .:: . KIAA09 ILSILKNWTLKAAQTMQDDLLMDKSKTQPQPQQQQR-QQQQPQPESSVS-EAPS--TPLS 10 20 30 40 50 90 100 110 120 130 140 FLJ002 SHSPGPTFIPMTSHVVSAVIHPAVQSQVTHLALHHIPRAPGMKLSQPPKLPPSLNLPNHE :..: : . . :. :: .. .. .. : ::... :::. :: . : KIAA09 SETPKPEENSAVPALSPAAAPPAPNGP-DKMQMES-PLLPGLSFHQPPQQPPPPQEPAAP 60 70 80 90 100 110 KIAA09 GASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFPHHVNPVFGGTFSPQIGLAQ 120 130 140 150 160 170 >>KIAA0183 ( 1111 res) ha02726 (1111 aa) initn: 91 init1: 56 opt: 93 Z-score: 88.2 bits: 25.2 E(): 10 Smith-Waterman score: 99; 31.731% identity (52.885% similar) in 104 aa overlap (49-141:295-393) 20 30 40 50 60 70 FLJ002 RVDSYSPNPTCVASHLHSSSSSVNGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPS : ..:: :: :: . :: ... :: KIAA01 HQLVLPPCDVVIKAVADYVRNIQDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAIGYYSA- 270 280 290 300 310 320 80 90 100 110 120 FLJ002 LTSRAYS-HSP-------GPTFIP--MTSHVVSAVIH-PAVQSQVTHLALHHIPRAPGMK ::. .: : : :: .: . :: ... : .. :. .: ..: .:: KIAA01 -TSKPMSFHPPHYLAARPGPFGMPGMVPPHVPPQMLNIPQTSLQAKPVA-PQVP-SPGGA 330 340 350 360 370 380 130 140 FLJ002 LSQPPKLPPSLNLPNHE .: : : ::. : KIAA01 PGQGP-YPYSLSEPAPLTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPINPAQSGSPN 390 400 410 420 430 >>KIAA0250 ( 1122 res) ha02790 (1122 aa) initn: 87 init1: 62 opt: 93 Z-score: 88.2 bits: 25.2 E(): 10 Smith-Waterman score: 99; 27.211% identity (46.259% similar) in 147 aa overlap (10-141:606-733) 10 20 30 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASHLHSSSS .:.. : .: . .:: . :.:. KIAA02 VTFKENIKTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQA-----SNSQ 580 590 600 610 620 630 40 50 60 70 80 90 FLJ002 SVNGHYPVLIWRSVFPHSTSRIHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPMTSHV . :.: ..:: :: ::: . : . :.: . : :: : : KIAA02 FIPIHHP-----GAFPPLPSR-----PGFPPPTYVIPPPV---AFSMGSGYTF-PAGVSV 640 650 660 670 100 110 120 130 140 FLJ002 VSAVIHPAVQS----QVTHLALHHIPRA---P--------GMKLSQPPKLPPSLNLPNHE .. ..:...: :: ::: . : : . ::::. : .:: KIAA02 PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP 680 690 700 710 720 730 KIAA02 TAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLG 740 750 760 770 780 790 144 residues in 1 query sequences 2210850 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:43 2009 done: Fri Feb 27 10:50:43 2009 Total Scan time: 0.320 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]