# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh00368.fasta.nr -Q ../query/FLJ00273.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00273, 144 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825989 sequences Expectation_n fit: rho(ln(x))= 5.4131+/-0.000186; mu= 4.8069+/- 0.010 mean_var=74.9550+/-14.313, 0's: 30 Z-trim: 38 B-trim: 0 in 0/66 Lambda= 0.148141 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748484|dbj|BAC03379.1| FLJ00273 protein [Homo ( 144) 992 220.4 7.3e-56 >>gi|21748484|dbj|BAC03379.1| FLJ00273 protein [Homo sap (144 aa) initn: 992 init1: 992 opt: 992 Z-score: 1159.2 bits: 220.4 E(): 7.3e-56 Smith-Waterman score: 992; 100.000% identity (100.000% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 FLJ002 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASHLHSSSSSVNGHYPVLIWRSVFPHSTSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SLFRYTRFAMRHSVCSISRVDSYSPNPTCVASHLHSSSSSVNGHYPVLIWRSVFPHSTSR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 IHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPMTSHVVSAVIHPAVQSQVTHLALHHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 IHGHSPGFKSSVSGYSPSLTSRAYSHSPGPTFIPMTSHVVSAVIHPAVQSQVTHLALHHI 70 80 90 100 110 120 130 140 FLJ002 PRAPGMKLSQPPKLPPSLNLPNHE :::::::::::::::::::::::: gi|217 PRAPGMKLSQPPKLPPSLNLPNHE 130 140 144 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 05:11:20 2009 done: Sat Feb 28 05:15:14 2009 Total Scan time: 567.040 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]