# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh00612.fasta.huge -Q ../query/FLJ00276.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00276, 426 aa vs ./tmplib.10216 library 2210568 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3022+/-0.0053; mu= 16.3997+/- 0.357 mean_var=166.2583+/-37.360, 0's: 0 Z-trim: 2 B-trim: 16 in 1/39 Lambda= 0.099468 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00004 ( 698 res) as00004 ( 698) 229 44.5 2.9e-05 KIAA1362 ( 699 res) fj02381 ( 699) 162 34.9 0.022 KIAA0310 ( 2388 res) ee03470 (2388) 122 30.0 2.3 KIAA1862 ( 1070 res) aj00563 (1070) 116 28.6 2.7 KIAA1760 ( 2219 res) af00030 (2219) 115 29.0 4.4 KIAA1471 ( 1421 res) fj02383s1 (1421) 112 28.2 4.7 KIAA0793 ( 1055 res) hk05692 (1055) 110 27.7 4.9 FLJ00143 ( 373 res) sh04531 ( 373) 103 26.0 5.7 KIAA0148 ( 704 res) fh23975 ( 704) 104 26.6 7.2 FLJ00206 ( 702 res) sj04644 ( 702) 103 26.5 7.9 KIAA1614 ( 1208 res) fj12973 (1208) 105 27.1 8.7 KIAA0291 ( 1024 res) fh25236 (1024) 103 26.7 9.7 FLJ00359 ( 1056 res) sh03991 (1056) 103 26.7 9.8 KIAA1528 ( 740 res) hh03104(revised) ( 740) 101 26.2 10 KIAA1865 ( 723 res) fj14303 ( 723) 100 26.1 11 KIAA0910 ( 1315 res) hg02207s1 (1315) 103 26.9 11 FLJ00357 ( 628 res) sh02980 ( 628) 99 25.8 11 FLJ00139 ( 585 res) sh03241 ( 585) 98 25.6 12 KIAA0079 ( 1102 res) ha03543 (1102) 101 26.5 12 KIAA0595 ( 1666 res) hj02929s1 (1666) 103 27.1 13 KIAA0309 ( 3053 res) hg00096s1 (3053) 105 27.8 14 FLJ00353 ( 1766 res) sh01144 (1766) 101 26.8 16 KIAA1670 ( 598 res) hh04251 ( 598) 95 25.2 16 KIAA0782 ( 1281 res) hk05405s1 (1281) 99 26.3 16 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 98 26.1 17 KIAA1142 ( 467 res) hh05864 ( 467) 93 24.8 17 KIAA1851 ( 523 res) hg04492 ( 523) 93 24.8 18 KIAA1949 ( 662 res) fj02913 ( 662) 93 25.0 21 KIAA1366 ( 550 res) fj02695 ( 550) 91 24.6 23 KIAA0644 ( 887 res) hj03618 ( 887) 93 25.2 24 KIAA1172 ( 929 res) hj03919(revised) ( 929) 93 25.2 25 KIAA0808 ( 530 res) hk04477s1 ( 530) 90 24.4 25 KIAA1187 ( 813 res) fk03027 ( 813) 92 25.0 25 KIAA0198 ( 562 res) ha02521 ( 562) 90 24.4 26 KIAA0842 ( 1020 res) hk05077 (1020) 93 25.3 26 KIAA1355 ( 1189 res) fj01564 (1189) 93 25.4 28 KIAA1744 ( 855 res) pj01516 ( 855) 91 24.9 29 FLJ00267 ( 1110 res) sj04085 (1110) 92 25.2 30 KIAA0304 ( 2415 res) af07172 (2415) 96 26.3 30 FLJ00413 ( 308 res) sg00013 ( 308) 85 23.3 31 KIAA1845 ( 705 res) fg05317(revised) ( 705) 89 24.5 32 KIAA1994 ( 1117 res) bh00052 (1117) 91 25.1 33 KIAA1668 ( 791 res) fh11717 ( 791) 89 24.5 34 KIAA1447 ( 1721 res) fh04686 (1721) 93 25.6 34 KIAA0165 ( 2093 res) ha02421 (2093) 94 25.9 34 KIAA0630 ( 490 res) hh01735 ( 490) 86 23.8 35 KIAA1276 ( 1068 res) fh00139s1 (1068) 90 24.9 36 KIAA0666 ( 1085 res) hk02075 (1085) 90 24.9 36 KIAA1419 ( 2464 res) ff01653 (2464) 94 26.0 37 FLJ00062 ( 484 res) as00062 ( 484) 85 23.6 39 >>FLJ00004 ( 698 res) as00004 (698 aa) initn: 163 init1: 163 opt: 229 Z-score: 188.0 bits: 44.5 E(): 2.9e-05 Smith-Waterman score: 229; 38.889% identity (83.333% similar) in 72 aa overlap (33-104:473-544) 10 20 30 40 50 60 FLJ002 LTPCSVRARSSRSPSAATTPWSATFSWVIQVGAQFQVRTRIDVAGMKVRELMDAEFPHSF .: .:.:: ..:..:..:.... . :.: FLJ000 KLSAKNGTPQDRHLFLFNSMILYCVPKLRLMGQKFSVREKMDISGLQVQDIVKPNTAHTF 450 460 470 480 490 500 70 80 90 100 110 120 FLJ002 LVSGKQRTLELQARSQEEMISWMQAFQAAIDQIEKRNETFKAAAQGPEGDIQEQELQSEE ...:..:.::::.:..:: :.: .::.:.. .. .::::: FLJ000 IITGRKRSLELQTRTEEEKKEWIQIIQATIEKHKQNSETFKAFGGAFSQDEDPSLSPDMP 510 520 530 540 550 560 130 140 150 160 170 180 FLJ002 LGLRAPQWVRDKHGDHVHALPGALQRSDAPSPPLPGLRLCEYSCQHSCLHLRHPGLHLHH FLJ000 ITSTSPVEPVVTTEGSSGAAGLEPRKLSSKTRRDKEKQSCKSCGETFNSITKRRHHCKLC 570 580 590 600 610 620 >>KIAA1362 ( 699 res) fj02381 (699 aa) initn: 111 init1: 111 opt: 162 Z-score: 136.0 bits: 34.9 E(): 0.022 Smith-Waterman score: 162; 29.126% identity (63.107% similar) in 103 aa overlap (31-133:454-554) 10 20 30 40 50 60 FLJ002 TPLTPCSVRARSSRSPSAATTPWSATFSWVIQVGAQFQVRTRIDVAGMKVRELMDAEFPH .: : .... . ...::::::. . . . KIAA13 KEGILMKLSRKVMQPRMFFLFNDALLYTTPVQSG-MYKLNNMLSLAGMKVRKPTQEAYQN 430 440 450 460 470 480 70 80 90 100 110 120 FLJ002 SFLVSGKQRTLELQARSQEEMISWMQAFQAAIDQIEKRNETFKAAAQGPEGDIQEQELQS . . . .:.. :.: : : :..:.. ::.. :. :: . . :.: ...: : KIAA13 ELKIESVERSFILSASSATERDEWLEAISRAIEEYAKKRITFCPSRSLDEADSENKEEVS 490 500 510 520 530 540 130 140 150 160 170 180 FLJ002 EELGLRAPQWVRDKHGDHVHALPGALQRSDAPSPPLPGLRLCEYSCQHSCLHLRHPGLHL :: .:: :. : KIAA13 P-LGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQP 550 560 570 580 590 600 >>KIAA0310 ( 2388 res) ee03470 (2388 aa) initn: 45 init1: 45 opt: 122 Z-score: 99.9 bits: 30.0 E(): 2.3 Smith-Waterman score: 124; 29.944% identity (44.068% similar) in 177 aa overlap (266-420:116-282) 240 250 260 270 280 FLJ002 HLGFHLIHLGLHLPHLGLYLSHLGLHLPHLGFHQCHPGLYLSHL-------GLYLPYLG- :: : :::: . : : : : KIAA03 FAFSRQALQSTPLGSSSKSSPPVLQGPAPAGFSQ-HPGLLVPHTHARDSSQGPCEPLPGP 90 100 110 120 130 140 290 300 310 320 330 340 FLJ002 -LYP-----PSSGAAVPILAKSAGFNQCSPVVLGTSSEPGVCITTSSGPHSTPQ-EAAVS : : ::: .: . .:. . : : :::: : : :: : . .: KIAA03 LTQPRAHASPFSGALTPSAPPGPEMNRSAEV--GPSSEPEVQ-TLPYLPHYIPGVDPETS 150 160 170 180 190 200 350 360 370 380 390 FLJ002 H--FLDGKMRPIEVKLLAEGTPEADPMNLPAFLSSFSTTLRPRARKWSPVLVEGHLAPHP : :.: .. . :.. .:. : . :: :. .:.:: .: .:.: KIAA03 HGGHPHGNMPGLD-RPLSRQNPH-DGVVTPAASPSLPQPGLQMPGQWGPV--QG--GPQP 210 220 230 240 250 400 410 420 FLJ002 L----RPCPTTS-PGPCPLCTHPPRHPLFTRFG ::: :. : : :. : KIAA03 SGQHRSPCPEGPVPSGVPCATSVPHFPTPSILHQGPGHEQHSPLVAPPAALPSDGRDEVS 260 270 280 290 300 310 >>KIAA1862 ( 1070 res) aj00563 (1070 aa) initn: 91 init1: 55 opt: 116 Z-score: 98.6 bits: 28.6 E(): 2.7 Smith-Waterman score: 116; 26.733% identity (53.465% similar) in 101 aa overlap (317-407:632-730) 290 300 310 320 330 340 FLJ002 GLYPPSSGAAVPILAKSAGFNQCSPVVLGTSSEPGVC--ITTSSGPHSTPQ---EAAVSH ...::: . .:.:. .: :.:. KIAA18 PTRSLHLVSPQVFTSSCVPACHQRGFKDPGATRPGVWRWLPEGSAPKPSPLHCLESALRG 610 620 630 640 650 660 350 360 370 380 390 FLJ002 FLDGKMRPIEVKLLAEGTPEADPMNLPAFLSSFSTTLRPRARKWSPVLVEGHLAPH---- .: .::.. .. .: .: . .: .: . ::. . :.:. : : KIAA18 ILP--VRPLRFACVGGPSPSPSPGSSSSFSGSEGEDPRPEPELWKPLPQERDRLPSCKPP 670 680 690 700 710 400 410 420 FLJ002 -PLRPCPTTSPGPCPLCTHPPRHPLFTRFG :: ::: .: KIAA18 VPLSPCPGGTPAGSSGGSPGEDPRRTEPRYCSGLGAGTAQDPCPVSQLEKRPRVSEASRG 720 730 740 750 760 770 >>KIAA1760 ( 2219 res) af00030 (2219 aa) initn: 91 init1: 54 opt: 115 Z-score: 94.8 bits: 29.0 E(): 4.4 Smith-Waterman score: 115; 24.359% identity (45.513% similar) in 156 aa overlap (270-420:647-791) 240 250 260 270 280 290 FLJ002 HLIHLGLHLPHLGLYLSHLGLHLPHLGFHQCHPGLYLSH-LGLYLPYLGLYP-PSSGAAV : : . . : :: :: : :... .. KIAA17 STVYSDSQSSQQSVMLGSLADAAPSPAQCVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGL 620 630 640 650 660 670 300 310 320 330 340 350 FLJ002 PILAKSAGFNQCSPVVLGTSSEPGVCITTSSGPHSTPQEAAVSHFLDGKMRPIEVKLLAE :. :. : : . .:.. .. : :::. .. .. ..: KIAA17 PV--GSVPAPACPPSLQQHFPDPAMSFAPVLPPPSTPMPTGPGQPAPPGQQP-------- 680 690 700 710 720 360 370 380 390 400 410 FLJ002 GTPEADPMNLPAFLSSFSTT-LRPRARKWSPVLVEGHL--APHPLRPCPTTSPGPCPLCT : :.: :: :. .. :.: . : :. . :: :.: . :: KIAA17 -PPLAQPTPLPQVLAPQPVVPLQPVPPHLPPYLAPASQVGAPAQLKPLQMPQAPLQPLAQ 730 740 750 760 770 780 420 FLJ002 HPPRHPLFTRFG ::. : KIAA17 VPPQMPPIPVVPPITPLAGIDGLPPALPDLPTATVPPVPPPQYFSPAVILPSLAAPLPPA 790 800 810 820 830 840 >>KIAA1471 ( 1421 res) fj02383s1 (1421 aa) initn: 124 init1: 76 opt: 112 Z-score: 94.3 bits: 28.2 E(): 4.7 Smith-Waterman score: 146; 29.843% identity (47.120% similar) in 191 aa overlap (245-425:793-960) 220 230 240 250 260 270 FLJ002 LRGLHLCHPGLYLSYLGFHLIHLGFHLIHLGLHLPHLGLYLSHLGLHLPHLGFHQCHPGL : .:: : : ::.: :. KIAA14 PLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLG-SATPLHFP--------PSP 770 780 790 800 810 280 290 300 310 320 FLJ002 YLSHLGLYLPYL-GLYPPS--SGAAVPILAKSAGFNQCSPVVLGTSSEPGVCITTSSG-- . : : :: : ::. :: . : .. : . ::. : . :. : : KIAA14 FPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPG-PHAMPVAPGPALYPAPAYTPELGLV 820 830 840 850 860 870 330 340 350 360 370 380 FLJ002 PHSTPQEAAVSH-FLD-GKMRPIEVKLLAEGTPEADPMNLPAFLSS-FSTTLRPRARKWS :.:.::...:: .. : :. : : : : : : . .. ..:: . . KIAA14 PRSSPQHGVVSSPYVGVGPAPPV------AGLPSAPP---PQFSGPELAMAVRPATTTVD 880 890 900 910 920 390 400 410 420 FLJ002 PVL--VEGHLAPHPLRPCPTTSPGPCPLCTHPPRHPLFTRFG . . .: :: :: :: .: : : :: .:: : . KIAA14 SIQAPIPSHTAP---RPNPTPAPPP-PCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSG 930 940 950 960 970 KIAA14 IPTGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYA 980 990 1000 1010 1020 1030 >>KIAA0793 ( 1055 res) hk05692 (1055 aa) initn: 119 init1: 79 opt: 110 Z-score: 94.0 bits: 27.7 E(): 4.9 Smith-Waterman score: 117; 26.087% identity (55.652% similar) in 115 aa overlap (35-138:794-904) 10 20 30 40 50 60 FLJ002 PCSVRARSSRSPSAATTPWSATFSWVIQVGAQFQVRTRIDVAGMKVRELMDAEF--PHSF ..:..: . . :: :.: : :. :: : KIAA07 HKLTKKGLQQRMFFLFSDMLLYTSKGVAGTSHFRIRGLLPLQGMLVEE-SDNEWSVPHCF 770 780 790 800 810 820 70 80 90 100 110 FLJ002 LVSGKQRTLELQARSQEEMISWMQAFQAAIDQIEKRNETFKA---------AAQGPEGDI . . :.:. . : .. : .:: ...::. .. ..: : ..:. KIAA07 TIYAAQKTIVVAASTRLEKEKWMLDLNSAIQAAKSGGDTAPALPGRTVCTRPPRSPNEVS 830 840 850 860 870 880 120 130 140 150 160 170 FLJ002 QEQELQSEELGLRAPQWVRDKHGDHVHALPGALQRSDAPSPPLPGLRLCEYSCQHSCLHL ::: ... :.:. . ::.: KIAA07 LEQESEDDARGVRSSL---EGHGQHRANTTMHVCWYRNTSVSRADHSAAVENQLSGYLLR 890 900 910 920 930 >>FLJ00143 ( 373 res) sh04531 (373 aa) initn: 61 init1: 61 opt: 103 Z-score: 92.8 bits: 26.0 E(): 5.7 Smith-Waterman score: 103; 25.694% identity (57.639% similar) in 144 aa overlap (12-153:13-147) 10 20 30 40 50 FLJ002 TPLTPCSVRARSSRSPSAATTPWSATFSWVIQVG-AQFQVRTRIDVAGMKVRELMDAEF :: ::: ..: : :.: . :. :... . ... . ..:.:.:.:. FLJ001 VEASSPGHGSPLSSLLPSA-SVPESMTISELRQATVAMMNRKDELEEENRSLRNLLDGEM 10 20 30 40 50 60 70 80 90 100 110 FLJ002 PHSFLVSGKQRTLELQARSQEEMISWMQAFQAAIDQIEKRNETFKAAAQGPEGDIQEQEL :: . . ::. .. ::: :... .. . ..::..:. . : .: : FLJ001 EHSAALRQEVDTLKRKVAEQEER----QGMK--VQALARENEVLKVQLKKYVGAVQM--L 60 70 80 90 100 110 120 130 140 150 160 170 FLJ002 QSEELGLRAPQ-WVRDKHGDHVHALPGALQRSDAPSPPLPGLRLCEYSCQHSCLHLRHPG . : ..:. : : . .. :: . . : : FLJ001 KREGQTAEVPNLWSVDGEVTVAEQKPGEIAEELASSYERKLIEVAEMHGELIEFNERLHR 120 130 140 150 160 170 180 190 200 210 220 230 FLJ002 LHLHHPGLHLSYLGLRLIHLGLHLPHLGLHLCHLHLSLRGLHLCHPGLYLSYLGFHLIHL FLJ001 ALVAKEALVSQMRQELIDLRGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVFLRGKA 180 190 200 210 220 230 >>KIAA0148 ( 704 res) fh23975 (704 aa) initn: 91 init1: 44 opt: 104 Z-score: 91.0 bits: 26.6 E(): 7.2 Smith-Waterman score: 104; 22.876% identity (52.288% similar) in 153 aa overlap (9-157:439-583) 10 20 30 FLJ002 TPLTPCSVRARSSRSPSAATTPWSATFSWVIQVGAQFQ . .. .: .. ..: . .:.:... KIAA01 SQDNDQPDYDSVASDEDTDLETTASKTNRQKLQTLQSENSNLRKQATTNVYQVQTGSEYT 410 420 430 440 450 460 40 50 60 70 80 90 FLJ002 VRTRIDVAGMKVRELMDAEFPHSFLV--SGKQRTLEL-QARSQEEMISWMQAFQAAIDQI . . ...: : . : :. ::.. : . .: :: .: : : ... KIAA01 DTS--NHSSLKRRPSARGSRPMSMYETGSGQKPYLPMGEASRPEESRMRLQPFPAHASRL 470 480 490 500 510 520 100 110 120 130 140 150 FLJ002 EKRNETFKAAAQGPEGDIQEQELQSEELG-LRAPQWVRDKHGDHVHALPGALQRSDAPSP ::.: : .. .. .:.. . . : . : :. : :: . .: . . :::: KIAA01 EKQNSTPESDYDNTPNDMEPDGMGSSRKGRQRSMVW----PGDGL--VPDTAEPHVAPSP 530 540 550 560 570 580 160 170 180 190 200 210 FLJ002 PLPGLRLCEYSCQHSCLHLRHPGLHLHHPGLHLSYLGLRLIHLGLHLPHLGLHLCHLHLS :: KIAA01 TLPSTEDVIRKTEQITKNIQELLRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 590 600 610 620 630 640 >>FLJ00206 ( 702 res) sj04644 (702 aa) initn: 88 init1: 52 opt: 103 Z-score: 90.2 bits: 26.5 E(): 7.9 Smith-Waterman score: 119; 30.120% identity (47.390% similar) in 249 aa overlap (178-398:115-342) 150 160 170 180 190 200 FLJ002 RSDAPSPPLPGLRLCEYSCQHSCLHLRHPGLHLHHPG-LHLSYLGLRLIHLGLHLPHLGL : :. :. : :: .:: : ::. :: FLJ002 SLQHKTVIFMFAQEPEEQKGPQERAAFLDSLMLQMPSELPLSSRRMRLTHCGLQEKHLE- 90 100 110 120 130 140 210 220 230 240 250 260 FLJ002 HLCHLHLSLRGLHLCHPG-LYLSYLGFHLIHLGFHLIHLGLHLPHLG----LYLSHLGLH .::. .: : :: : :.:.. : : : .:. :: :: : ::. :: FLJ002 QLCK---ALGGS--CHLGHLHLDFSGNALGDEG--AARLAQLLPGLGALQSLNLSENGLS 150 160 170 180 190 270 280 290 300 FLJ002 LPH-LGFHQCHPGL-YLSHLGL-----YLPYLG------LYPPSSGAAVPILAKSAGFNQ : ::. .: : .: .: . .. : .. .: : :: :: . FLJ002 LDAVLGLVRCFSTLQWLFRLDISFESQHILLRGDKTSRDMWATGSLPDFPAAAKFLGFRK 200 210 220 230 240 250 310 320 330 340 350 FLJ002 -CSPVVLGTSS---EPG----VCITTSSGPHSTPQEAAVS-HFLDGKMRPIEVKLLAEGT : : : : :: .: : .. : : : .: .::. . .. : . FLJ002 RCIPRSLCLSECPLEPPSLTRLCATLKDCPG--PLELQLSCEFLSDQ----SLETLLDCL 260 270 280 290 300 310 360 370 380 390 400 410 FLJ002 PEADPMNLPAFLSSFSTTLRPRARKWSPVLVEGHLAPHPLRPCPTTSPGPCPLCTHPPRH :. ..: :. .: : :. :: :. . :. : FLJ002 PQLPQLSL---LQLSQTGLSPK----SPFLLANTLSLCPRVKKVDLRSLHHATLHFRSNE 320 330 340 350 360 420 FLJ002 PLFTRFG FLJ002 EEEGVCCGRFTGCSLSQEHVESLCWLLSKCKDLSQVDLSANLLGDSGLRCLLECLPQVPI 370 380 390 400 410 420 426 residues in 1 query sequences 2210568 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:46 2009 done: Fri Feb 27 10:50:46 2009 Total Scan time: 0.550 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]