# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh00874.fasta.nr -Q ../query/FLJ00124.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00124, 118 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827384 sequences Expectation_n fit: rho(ln(x))= 4.9809+/-0.000178; mu= 5.9437+/- 0.010 mean_var=61.8031+/-11.929, 0's: 28 Z-trim: 29 B-trim: 94 in 1/68 Lambda= 0.163143 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676454|dbj|BAB84879.1| FLJ00124 protein [Homo ( 118) 777 190.5 5e-47 gi|119622402|gb|EAX01997.1| mitochondrial ribosoma ( 203) 777 190.6 7.7e-47 gi|11275665|gb|AAG33698.1| P2ECSL [Homo sapiens] ( 210) 730 179.6 1.7e-43 gi|52783325|sp|Q9H2W6.1|RM46_HUMAN RecName: Full=3 ( 279) 730 179.7 2.1e-43 gi|114658727|ref|XP_001164394.1| PREDICTED: simila ( 206) 722 177.7 6.2e-43 gi|114658725|ref|XP_510572.2| PREDICTED: mitochond ( 279) 722 177.8 7.9e-43 gi|119622401|gb|EAX01996.1| mitochondrial ribosoma ( 152) 712 175.3 2.5e-42 gi|109082284|ref|XP_001088632.1| PREDICTED: simila ( 205) 707 174.2 7.1e-42 gi|109082282|ref|XP_001088970.1| PREDICTED: simila ( 279) 699 172.4 3.4e-41 gi|75042083|sp|Q5RBU2.1|RM46_PONAB RecName: Full=3 ( 279) 697 171.9 4.6e-41 gi|73951430|ref|XP_536185.2| PREDICTED: similar to ( 280) 644 159.4 2.7e-37 gi|81883364|sp|Q5RK00.1|RM46_RAT RecName: Full=39S ( 277) 632 156.6 1.9e-36 gi|52783324|sp|Q9EQI8.1|RM46_MOUSE RecName: Full=3 ( 283) 631 156.4 2.2e-36 gi|194206313|ref|XP_001916683.1| PREDICTED: simila ( 280) 614 152.4 3.5e-35 gi|122146150|sp|Q3SZ22.1|RM46_BOVIN RecName: Full= ( 277) 606 150.5 1.3e-34 gi|50753105|ref|XP_413872.1| PREDICTED: similar to ( 286) 481 121.1 9.6e-26 gi|138519789|gb|AAI35282.1| LOC100125128 protein [ ( 278) 469 118.2 6.6e-25 gi|12839506|dbj|BAB24577.1| unnamed protein produc ( 163) 424 107.5 6.6e-22 gi|47220892|emb|CAG03099.1| unnamed protein produc ( 290) 392 100.1 2e-19 gi|119622403|gb|EAX01998.1| mitochondrial ribosoma ( 173) 380 97.1 9.1e-19 gi|49901212|gb|AAH76280.1| Zgc:92810 [Danio rerio] ( 286) 357 91.9 5.8e-17 gi|210096495|gb|EEA44639.1| hypothetical protein B ( 239) 350 90.2 1.6e-16 gi|55251026|emb|CAH69071.1| novel protein similar ( 286) 348 89.8 2.5e-16 gi|210119175|gb|EEA66902.1| hypothetical protein B ( 239) 342 88.3 5.8e-16 gi|193610512|ref|XP_001944243.1| PREDICTED: simila ( 269) 320 83.1 2.3e-14 gi|149587694|ref|XP_001521286.1| PREDICTED: simila ( 314) 310 80.8 1.3e-13 gi|72006769|ref|XP_782274.1| PREDICTED: hypothetic ( 306) 308 80.4 1.8e-13 gi|116127281|gb|EAA11413.3| AGAP006684-PA [Anophel ( 271) 304 79.4 3.2e-13 gi|91077572|ref|XP_972780.1| PREDICTED: similar to ( 255) 292 76.5 2.1e-12 gi|209738022|gb|ACI69880.1| 39S ribosomal protein ( 293) 281 74.0 1.4e-11 gi|108874035|gb|EAT38260.1| mitochondrial ribosoma ( 267) 275 72.6 3.6e-11 gi|167877783|gb|EDS41166.1| mitochondrial ribosoma ( 272) 265 70.2 1.8e-10 gi|48143341|ref|XP_397424.1| PREDICTED: similar to ( 269) 264 70.0 2.2e-10 gi|215259959|gb|ACJ64464.1| mitochondrial ribosoma ( 236) 261 69.2 3.2e-10 gi|7292156|gb|AAF47568.1| mitochondrial ribosomal ( 258) 250 66.7 2e-09 gi|194179294|gb|EDW92905.1| GE21186 [Drosophila ya ( 258) 250 66.7 2e-09 gi|194128074|gb|EDW50117.1| GM14444 [Drosophila se ( 258) 249 66.4 2.4e-09 gi|190652983|gb|EDV50226.1| GG14823 [Drosophila er ( 258) 244 65.2 5.4e-09 gi|54641160|gb|EAL29910.1| GA12628 [Drosophila pse ( 261) 238 63.8 1.5e-08 gi|194111073|gb|EDW33116.1| GL16054 [Drosophila pe ( 261) 233 62.7 3.3e-08 gi|190623242|gb|EDV38766.1| GF24835 [Drosophila an ( 258) 227 61.2 8.7e-08 gi|193918753|gb|EDW17620.1| GI12544 [Drosophila mo ( 262) 218 59.1 3.8e-07 gi|193896680|gb|EDV95546.1| GH15718 [Drosophila gr ( 263) 215 58.4 6.3e-07 gi|194161955|gb|EDW76856.1| GK16633 [Drosophila wi ( 261) 214 58.2 7.3e-07 gi|60464121|gb|EAL62282.1| hypothetical protein DD ( 361) 214 58.3 9.5e-07 gi|190585852|gb|EDV25920.1| hypothetical protein T ( 304) 207 56.6 2.6e-06 gi|198427074|ref|XP_002129519.1| PREDICTED: simila ( 297) 195 53.8 1.8e-05 gi|119404135|gb|EAW14552.1| 50S ribosomal subunit ( 333) 192 53.1 3.2e-05 gi|156221714|gb|EDO42566.1| predicted protein [Nem ( 297) 188 52.1 5.7e-05 gi|83771093|dbj|BAE61225.1| unnamed protein produc ( 338) 188 52.1 6.3e-05 >>gi|18676454|dbj|BAB84879.1| FLJ00124 protein [Homo sap (118 aa) initn: 777 init1: 777 opt: 777 Z-score: 1000.6 bits: 190.5 E(): 5e-47 Smith-Waterman score: 777; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 DHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKND 10 20 30 40 50 60 70 80 90 100 110 FLJ001 RTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSGGFSAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSGGFSAFL 70 80 90 100 110 >>gi|119622402|gb|EAX01997.1| mitochondrial ribosomal pr (203 aa) initn: 777 init1: 777 opt: 777 Z-score: 997.1 bits: 190.6 E(): 7.7e-47 Smith-Waterman score: 777; 100.000% identity (100.000% similar) in 118 aa overlap (1-118:86-203) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL :::::::::::::::::::::::::::::: gi|119 PPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL :::::::::::::::::::::::::::: gi|119 AEWQPGETLRGTAERTLATLSGGFSAFL 180 190 200 >>gi|11275665|gb|AAG33698.1| P2ECSL [Homo sapiens] (210 aa) initn: 730 init1: 730 opt: 730 Z-score: 937.1 bits: 179.6 E(): 1.7e-43 Smith-Waterman score: 730; 100.000% identity (100.000% similar) in 111 aa overlap (1-111:17-127) 10 20 30 40 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFL :::::::::::::::::::::::::::::::::::::::::::: gi|112 MASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFL 10 20 30 40 50 60 50 60 70 80 90 100 FLJ001 QFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|112 QFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAE 70 80 90 100 110 120 110 FLJ001 RTLATLSGGFSAFL ::::::: gi|112 RTLATLSKNNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNK 130 140 150 160 170 180 >>gi|52783325|sp|Q9H2W6.1|RM46_HUMAN RecName: Full=39S r (279 aa) initn: 730 init1: 730 opt: 730 Z-score: 935.3 bits: 179.7 E(): 2.1e-43 Smith-Waterman score: 730; 100.000% identity (100.000% similar) in 111 aa overlap (1-111:86-196) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL :::::::::::::::::::::::::::::: gi|527 PPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL ::::::::::::::::::::: gi|527 AEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFK 180 190 200 210 220 230 >>gi|114658727|ref|XP_001164394.1| PREDICTED: similar to (206 aa) initn: 722 init1: 722 opt: 722 Z-score: 927.1 bits: 177.7 E(): 6.2e-43 Smith-Waterman score: 722; 99.099% identity (100.000% similar) in 111 aa overlap (1-111:13-123) 10 20 30 40 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKL ::::::::::::::::::::.::::::::::::::::::::::::::: gi|114 MKMIEIERSLYSDHELRALDENQRLAKKKADLYDEEDEQDILLAQDLEDMWEQKFLQFKL 10 20 30 40 50 60 50 60 70 80 90 100 FLJ001 GARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLA 70 80 90 100 110 120 110 FLJ001 TLSGGFSAFL ::: gi|114 TLSENSMEAKFLGNAPCGHYTFKFPQAVRTESNLGAKVFFFKALLLTGDFSQAGNKGHHV 130 140 150 160 170 180 >>gi|114658725|ref|XP_510572.2| PREDICTED: mitochondrial (279 aa) initn: 722 init1: 722 opt: 722 Z-score: 925.2 bits: 177.8 E(): 7.9e-43 Smith-Waterman score: 722; 99.099% identity (100.000% similar) in 111 aa overlap (1-111:86-196) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL ::::::::::::::::::::.::::::::: gi|114 PPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLYDEEDEQDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL ::::::::::::::::::::: gi|114 AEWQPGETLRGTAERTLATLSENSMEAKFLGNAPCGHYTFKFPQAVRTESNLGAKVFFFK 180 190 200 210 220 230 >>gi|119622401|gb|EAX01996.1| mitochondrial ribosomal pr (152 aa) initn: 374 init1: 374 opt: 712 Z-score: 916.3 bits: 175.3 E(): 2.5e-42 Smith-Waterman score: 712; 99.099% identity (99.099% similar) in 111 aa overlap (1-111:17-126) 10 20 30 40 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFL :::::::::::::::::::::::::::::::::::::::::::: gi|119 MASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFL 10 20 30 40 50 60 50 60 70 80 90 100 FLJ001 QFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAE ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QFKLGARIT-ADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAE 70 80 90 100 110 110 FLJ001 RTLATLSGGFSAFL ::::::: gi|119 RTLATLSENNMEAKFLGNAPCGHYTFKFPQAMR 120 130 140 150 >>gi|109082284|ref|XP_001088632.1| PREDICTED: similar to (205 aa) initn: 707 init1: 707 opt: 707 Z-score: 908.0 bits: 174.2 E(): 7.1e-42 Smith-Waterman score: 707; 95.536% identity (99.107% similar) in 112 aa overlap (1-112:86-197) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL ::::::::::::::::::::.::.:::::: gi|109 PALVSKPLTPLQEEMASLLQQIEIERSVYSDHELRALDENQRLAKKKADLYDEQDEQDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ :.::::::::: :::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 LVQDLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKLGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL :::::::::::::::::::::: gi|109 AEWQPGETLRGTAERTLATLSGKTTWKPSS 180 190 200 >>gi|109082282|ref|XP_001088970.1| PREDICTED: similar to (279 aa) initn: 699 init1: 699 opt: 699 Z-score: 895.9 bits: 172.4 E(): 3.4e-41 Smith-Waterman score: 699; 95.495% identity (99.099% similar) in 111 aa overlap (1-111:86-196) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL ::::::::::::::::::::.::.:::::: gi|109 PALVSKPLTPLQEEMASLLQQIEIERSVYSDHELRALDENQRLAKKKADLYDEQDEQDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ :.::::::::: :::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 LVQDLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKLGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL ::::::::::::::::::::: gi|109 AEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYKFKFPQAVQTESNLGAKVFFFK 180 190 200 210 220 230 >>gi|75042083|sp|Q5RBU2.1|RM46_PONAB RecName: Full=39S r (279 aa) initn: 697 init1: 697 opt: 697 Z-score: 893.4 bits: 171.9 E(): 4.6e-41 Smith-Waterman score: 697; 95.495% identity (98.198% similar) in 111 aa overlap (1-111:86-196) 10 20 30 FLJ001 DHELRALDENQRLAKKKADLHDEEDEQDIL :::::::::::::: :::::.:::::.::: gi|750 PPAVSKPLTPFQEEMASLLQQIEIERSLYSDHELRALDENQRLAGKKADLYDEEDEEDIL 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 LAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LAQDLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQ 120 130 140 150 160 170 100 110 FLJ001 AEWQPGETLRGTAERTLATLSGGFSAFL .:::::::::::::::::::: gi|750 TEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFK 180 190 200 210 220 230 118 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 01:56:01 2009 done: Sat Feb 28 01:59:48 2009 Total Scan time: 534.090 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]