# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh01178.fasta.nr -Q ../query/FLJ00125.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00125, 156 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7823825 sequences Expectation_n fit: rho(ln(x))= 5.9067+/-0.000196; mu= 3.6077+/- 0.011 mean_var=109.5135+/-21.279, 0's: 45 Z-trim: 56 B-trim: 469 in 2/64 Lambda= 0.122558 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676456|dbj|BAB84880.1| FLJ00125 protein [Homo ( 156) 996 185.6 2.6e-45 gi|73921753|sp|Q9BX97.1|PLVAP_HUMAN RecName: Full= ( 442) 996 186.0 5.5e-45 gi|12963353|gb|AAK11226.1| fenestrated-endothelial ( 442) 996 186.0 5.5e-45 gi|114675989|ref|XP_512490.2| PREDICTED: plasmalem ( 731) 981 183.6 4.9e-44 gi|21755418|dbj|BAC04681.1| unnamed protein produc ( 437) 932 174.7 1.4e-41 gi|73986220|ref|XP_541953.2| PREDICTED: similar to ( 457) 819 154.7 1.5e-35 gi|194223744|ref|XP_001915124.1| PREDICTED: simila ( 458) 772 146.4 4.7e-33 gi|73587295|gb|AAI02835.1| Plasmalemma vesicle ass ( 442) 698 133.3 4e-29 gi|109123869|ref|XP_001114559.1| PREDICTED: simila ( 306) 634 121.9 7.7e-26 gi|148696982|gb|EDL28929.1| plasmalemma vesicle as ( 438) 634 122.0 1e-25 gi|73921754|sp|Q91VC4.1|PLVAP_MOUSE RecName: Full= ( 438) 634 122.0 1e-25 gi|13357198|gb|AAK20039.1|AF348403_1 PV1 protein [ ( 438) 623 120.1 3.9e-25 gi|73921755|sp|Q9WV78.1|PLVAP_RAT RecName: Full=Pl ( 438) 620 119.5 5.6e-25 gi|126324171|ref|XP_001370243.1| PREDICTED: simila ( 326) 478 94.3 1.6e-17 gi|109123867|ref|XP_001114532.1| PREDICTED: simila ( 47) 305 62.9 6.5e-09 gi|149559810|ref|XP_001515739.1| PREDICTED: simila ( 396) 312 65.0 1.3e-08 >>gi|18676456|dbj|BAB84880.1| FLJ00125 protein [Homo sap (156 aa) initn: 996 init1: 996 opt: 996 Z-score: 969.8 bits: 185.6 E(): 2.6e-45 Smith-Waterman score: 996; 100.000% identity (100.000% similar) in 156 aa overlap (1-156:1-156) 10 20 30 40 50 60 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLRASQEAKQKVEKEAQAREAKLQAECSRQTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ARSLRADIERVARENSDLQRQKLEAQQGLRASQEAKQKVEKEAQAREAKLQAECSRQTQL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 ALEEKAVLRKERDNLAKELEEKKREAEQLRMELAIRNSALDTCIKTKSQPMMPVSRPMGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ALEEKAVLRKERDNLAKELEEKKREAEQLRMELAIRNSALDTCIKTKSQPMMPVSRPMGP 70 80 90 100 110 120 130 140 150 FLJ001 VPNPQPIDPASLEEFKRKILESQRPPAGIPVAPSSG :::::::::::::::::::::::::::::::::::: gi|186 VPNPQPIDPASLEEFKRKILESQRPPAGIPVAPSSG 130 140 150 >>gi|73921753|sp|Q9BX97.1|PLVAP_HUMAN RecName: Full=Plas (442 aa) initn: 996 init1: 996 opt: 996 Z-score: 963.9 bits: 186.0 E(): 5.5e-45 Smith-Waterman score: 996; 100.000% identity (100.000% similar) in 156 aa overlap (1-156:287-442) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::::::::::::::::::::::::::: gi|739 LYHPLGSELASIRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLR 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP 380 390 400 410 420 430 FLJ001 VAPSSG :::::: gi|739 VAPSSG 440 >>gi|12963353|gb|AAK11226.1| fenestrated-endothelial lin (442 aa) initn: 996 init1: 996 opt: 996 Z-score: 963.9 bits: 186.0 E(): 5.5e-45 Smith-Waterman score: 996; 100.000% identity (100.000% similar) in 156 aa overlap (1-156:287-442) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::::::::::::::::::::::::::: gi|129 LYHPLGSELASIRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLR 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP 380 390 400 410 420 430 FLJ001 VAPSSG :::::: gi|129 VAPSSG 440 >>gi|114675989|ref|XP_512490.2| PREDICTED: plasmalemma v (731 aa) initn: 981 init1: 981 opt: 981 Z-score: 946.8 bits: 183.6 E(): 4.9e-44 Smith-Waterman score: 981; 98.718% identity (99.359% similar) in 156 aa overlap (1-156:576-731) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::::::::::::::::::::::::::: gi|114 LYHPLGSELASIRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLR 550 560 570 580 590 600 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR 610 620 630 640 650 660 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: :: gi|114 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKKKILESQRPPARIP 670 680 690 700 710 720 FLJ001 VAPSSG :::::: gi|114 VAPSSG 730 >>gi|21755418|dbj|BAC04681.1| unnamed protein product [H (437 aa) initn: 706 init1: 706 opt: 932 Z-score: 902.8 bits: 174.7 E(): 1.4e-41 Smith-Waterman score: 932; 96.154% identity (96.154% similar) in 156 aa overlap (1-156:287-437) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::::::::::::::::::::::::::: gi|217 LYHPLGSELASIRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLR 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR ::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|217 ASQEAKQKVEKEA-----KLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP 380 390 400 410 420 430 FLJ001 VAPSSG :: ::: gi|217 VALSSG >>gi|73986220|ref|XP_541953.2| PREDICTED: similar to pla (457 aa) initn: 846 init1: 590 opt: 819 Z-score: 794.6 bits: 154.7 E(): 1.5e-35 Smith-Waterman score: 819; 81.818% identity (95.455% similar) in 154 aa overlap (1-154:287-439) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::: ::::::::.:.::::::..:.:. gi|739 LYHPLGSEITSIRRSCDHMPTLMSTKVEELARSLRAGIERVARENADIQRQKLEVEQALK 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR ::::::.:.:::::::::::::::.:::::::::::.::::::.::::::::::.::::: gi|739 ASQEAKEKLEKEAQAREAKLQAECARQTQLALEEKATLRKERDTLAKELEEKKRDAEQLR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :.::. :::::::::.::::. :. :: ::.:::::::::.::::::.:::::::::. gi|739 MQLAVSNSALDTCIKAKSQPI-PIPRPAGPAPNPQPIDPAGLEEFKRRILESQRPPAANA 380 390 400 410 420 430 FLJ001 VAPSSG :::: gi|739 VAPSRDTAVTKTHTDRFIKLPE 440 450 >>gi|194223744|ref|XP_001915124.1| PREDICTED: similar to (458 aa) initn: 804 init1: 577 opt: 772 Z-score: 749.7 bits: 146.4 E(): 4.7e-33 Smith-Waterman score: 772; 80.263% identity (92.105% similar) in 152 aa overlap (1-152:282-432) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::: :. ::::::::.::::::..::: gi|194 LYHPINPELASIRRTCDHLPTIMSTKAEELARSLRAGINSVARENSDLKRQKLEAERGLR 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :::::: :.:::::::::::::::.:::::.:::::.:::::::::: :::::::::::. gi|194 ASQEAKGKAEKEAQAREAKLQAECTRQTQLVLEEKAALRKERDNLAKLLEEKKREAEQLK 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :.::. .::::::::.::::: :. ::.::.::::::::: ::::::.::::::: : gi|194 MQLAVSSSALDTCIKAKSQPM-PAPRPVGPAPNPQPIDPAVLEEFKRRILESQRPSLGSA 380 390 400 410 420 430 FLJ001 VAPSSG .: gi|194 AARAQSSIGTQPVDHSEGDSGHHPEDIL 440 450 >>gi|73587295|gb|AAI02835.1| Plasmalemma vesicle associa (442 aa) initn: 698 init1: 698 opt: 698 Z-score: 679.2 bits: 133.3 E(): 4e-29 Smith-Waterman score: 698; 71.154% identity (87.821% similar) in 156 aa overlap (1-156:287-442) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR :::::: :. :. :: :::::::..:.:: gi|735 LYHPLGSELPSIQRACDSLPSIMTSKVEELARSLRAGIDSVTLENEKLQRQKLEVEQSLR 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR ::::::.::::::::. .::::::.::::::::::..:.:::: :.:::::::::::.:. gi|735 ASQEAKEKVEKEAQAQAVKLQAECARQTQLALEEKVALQKERDRLVKELEEKKREAEHLK 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP ..::. :::::::::.::: .: :: ::::: ::::::::::::.::.::: ::. gi|735 LQLAVSNSALDTCIKAKSQLTIPGPRPAVPVPNPPPIDPASLEEFKRRILDSQRAPASNV 380 390 400 410 420 430 FLJ001 VAPSSG .. .:: gi|735 LVSASG 440 >>gi|109123869|ref|XP_001114559.1| PREDICTED: similar to (306 aa) initn: 634 init1: 634 opt: 634 Z-score: 620.1 bits: 121.9 E(): 7.7e-26 Smith-Waterman score: 634; 97.196% identity (99.065% similar) in 107 aa overlap (1-107:164-270) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR ::::: :::::::::::::::::::::::. gi|109 LYHPLGSELASIRRACDHMPSLMTSKVEELARSLRMDIERVARENSDLQRQKLEAQQGLQ 140 150 160 170 180 190 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR 200 210 220 230 240 250 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :::::::::::::::.: gi|109 MELAIRNSALDTCIKAKVGMRAPEGGCSGVRSRCQGGGGDVELGVGFEDGFLF 260 270 280 290 300 >>gi|148696982|gb|EDL28929.1| plasmalemma vesicle associ (438 aa) initn: 471 init1: 471 opt: 634 Z-score: 618.1 bits: 122.0 E(): 1e-25 Smith-Waterman score: 634; 64.103% identity (83.333% similar) in 156 aa overlap (1-156:284-438) 10 20 30 FLJ001 ARSLRADIERVARENSDLQRQKLEAQQGLR ::.::: ::::.:::..:.::::: ... . gi|148 YHYQLMPEYASLRRTCESLPGIMTTKIEELARGLRAGIERVTRENAELRRQKLELERAAQ 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 ASQEAKQKVEKEAQAREAKLQAECSRQTQLALEEKAVLRKERDNLAKELEEKKREAEQLR :.:::. .. ::::::..:.:::.:::::::::::.:: .:::: .::: .::: :::: gi|148 AAQEARARAGTEAQARETQLRAECARQTQLALEEKAALRAQRDNLERELEARKRELEQLR 320 330 340 350 360 370 100 110 120 130 140 150 FLJ001 MELAIRNSALDTCIKTKSQPMMPVSRPMGPVPNPQPIDPASLEEFKRKILESQRPPAGIP :. .: ::::::.:.:: : .: : :: ::: :::::::::::..:::::: :. : gi|148 TEVDVRISALDTCVKAKSLPAVP-PRVSGPPPNPPPIDPASLEEFKKRILESQRLPVVNP 380 390 400 410 420 430 FLJ001 VAPSSG .: :: gi|148 AAQPSG 156 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 01:59:56 2009 done: Sat Feb 28 02:04:03 2009 Total Scan time: 591.010 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]