# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh01653.fasta.huge -Q ../query/FLJ00278.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00278, 176 aa vs ./tmplib.10216 library 2210818 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.9480+/-0.00554; mu= 9.3031+/- 0.374 mean_var=181.2103+/-39.665, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.095276 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1041 ( 642 res) fh02801 ( 642) 109 26.0 4 KIAA0602 ( 962 res) hg01082b ( 962) 111 26.6 4.2 KIAA1818 ( 1157 res) hg00622 (1157) 112 26.8 4.2 KIAA1172 ( 929 res) hj03919(revised) ( 929) 109 26.3 5 KIAA1753 ( 818 res) pj02614 ( 818) 106 25.8 6.2 KIAA1545 ( 968 res) fj14026s1 ( 968) 107 26.0 6.2 FLJ00327 ( 266 res) sj02293 ( 266) 95 23.6 9.3 KIAA1555 ( 2414 res) fh17482s2 (2414) 108 26.7 9.4 FLJ00386 ( 811 res) sj04204 ( 811) 101 25.1 9.9 KIAA1639 ( 2584 res) af14886 (2584) 107 26.6 11 KIAA1426 ( 1066 res) fg04231s1 (1066) 101 25.3 12 KIAA0442 ( 1266 res) hh03913 (1266) 101 25.4 13 KIAA0200 ( 1042 res) ha02508 (1042) 99 25.0 14 FLJ00253 ( 349 res) sj09455 ( 349) 92 23.3 14 KIAA0920 ( 1134 res) hh02592 (1134) 99 25.0 14 KIAA0653 ( 558 res) hk01718 ( 558) 94 23.9 16 FLJ00269 ( 1383 res) sj06049 (1383) 99 25.1 16 KIAA0079 ( 1102 res) ha03543 (1102) 95 24.5 21 FLJ00028 ( 91 res) as00028 ( 91) 80 20.8 21 KIAA1522 ( 1044 res) fh14706(revised) (1044) 94 24.3 22 KIAA1986 ( 334 res) pg00636 ( 334) 86 22.5 25 KIAA1063 ( 593 res) hj04848 ( 593) 89 23.2 26 KIAA1029 ( 1015 res) fh00363 (1015) 92 24.0 26 FLJ00091 ( 170 res) as00091 ( 170) 81 21.4 27 FLJ00070 ( 1382 res) as00070 (1382) 93 24.3 28 KIAA0583 ( 1952 res) af01829 (1952) 94 24.7 31 KIAA1883 ( 1480 res) fh02249 (1480) 92 24.2 32 KIAA1048 ( 897 res) hh02560 ( 897) 89 23.5 33 KIAA0437 ( 1605 res) hj00203s1 (1605) 92 24.3 34 KIAA1458 ( 612 res) fh16694 ( 612) 86 22.8 35 KIAA0775 ( 639 res) hk05255 ( 639) 86 22.9 36 FLJ00034 ( 1343 res) as00034 (1343) 90 23.9 37 KIAA0461 ( 1355 res) hg00867 (1355) 90 23.9 37 KIAA1306 ( 1154 res) fh05845 (1154) 89 23.7 38 FLJ00099 ( 217 res) as00099 ( 217) 79 21.2 38 FLJ00008 ( 217 res) as00008 ( 217) 79 21.2 38 FLJ00358 ( 217 res) sh03894 ( 217) 79 21.2 38 KIAA1205 ( 1217 res) fg03511a (1217) 89 23.7 39 KIAA1681 ( 1236 res) fh23697 (1236) 89 23.7 39 KIAA0505 ( 200 res) hh00043 ( 200) 78 21.0 40 KIAA0749 ( 678 res) hk04328 ( 678) 85 22.8 41 KIAA1951 ( 679 res) fj05532 ( 679) 85 22.8 41 KIAA1657 ( 127 res) hg00527 ( 127) 75 20.4 41 KIAA1784 ( 1167 res) fh08226 (1167) 88 23.5 41 FLJ00079 ( 84 res) as00079 ( 84) 72 19.7 43 KIAA0656 ( 912 res) hk01789 ( 912) 86 23.1 44 KIAA1525 ( 1135 res) fj15588 (1135) 87 23.4 45 FLJ00420 ( 613 res) sj09535 ( 613) 83 22.4 46 KIAA1477 ( 870 res) fj04927 ( 870) 85 22.9 47 KIAA0344 ( 2066 res) hg01568 (2066) 90 24.2 47 >>KIAA1041 ( 642 res) fh02801 (642 aa) initn: 73 init1: 44 opt: 109 Z-score: 95.5 bits: 26.0 E(): 4 Smith-Waterman score: 116; 26.136% identity (49.432% similar) in 176 aa overlap (7-175:277-429) 10 20 30 FLJ002 AELGYKHP-GLSNSLSPFFLLGMGAQIGRGKLIFCS :: ..:.::.: .. .:.: KIAA10 SLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFS- 250 260 270 280 290 300 40 50 60 70 80 90 FLJ002 LFERMIHSHSPKLRRYRREVSPSHLVLSPEFFMN-PCRHVLCILSQYVHTH-THTHTHTH : ... : ..: . : . : : . .:: : . :: :: :. :. . KIAA10 --EYNFEDLSASFRSLYKSVFEQSL--SQQGLMNIPSES-----SQQSHTSCTYQHSPSS 310 320 330 340 350 100 110 120 130 140 FLJ002 T---HTHARVSSFYRN-GNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASS : : :. ::. . :. :.. . ..:: . :. :.:.: :: KIAA10 TVSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHPQPSPH-------PP----- 360 370 380 390 400 150 160 170 FLJ002 AHSPQYPPTHPQQLTRPQAATKNHTKK : :. : :::. .: ..:.. KIAA10 -HRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQAPPPP 410 420 430 440 450 460 >>KIAA0602 ( 962 res) hg01082b (962 aa) initn: 128 init1: 65 opt: 111 Z-score: 95.2 bits: 26.6 E(): 4.2 Smith-Waterman score: 111; 38.636% identity (59.091% similar) in 44 aa overlap (126-169:7-47) 100 110 120 130 140 150 FLJ002 THARVSSFYRNGNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASSAHSPQY ::.:: : :: . ::.: .: :. KIAA06 AAARRRPRACPTPGPGPSPP---PPGSHVTAPPPSA 10 20 30 160 170 FLJ002 PPTHPQQLTRPQAATKNHTKK :..: .. : :: KIAA06 RPARPPRVRGPAAAPGRRGSGGAGAMAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSP 40 50 60 70 80 90 >>KIAA1818 ( 1157 res) hg00622 (1157 aa) initn: 203 init1: 82 opt: 112 Z-score: 95.1 bits: 26.8 E(): 4.2 Smith-Waterman score: 112; 36.000% identity (58.000% similar) in 50 aa overlap (122-169:547-596) 100 110 120 130 140 150 FLJ002 THTHTHARVSSFYRNGNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASSAH : ::. : : : .::. ::.. ... KIAA18 ERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQ 520 530 540 550 560 570 160 170 FLJ002 -SPQ-YPPTHPQQLTRPQAATKNHTKK .:: : :.:: . : : KIAA18 PQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTI 580 590 600 610 620 630 >>KIAA1172 ( 929 res) hj03919(revised) (929 aa) initn: 140 init1: 66 opt: 109 Z-score: 93.9 bits: 26.3 E(): 5 Smith-Waterman score: 109; 32.727% identity (54.545% similar) in 55 aa overlap (122-176:692-745) 100 110 120 130 140 150 FLJ002 THTHTHARVSSFYRNGNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASSAH : : . : .:: :: : :.. . KIAA11 PMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGP-GPGGPEDRD 670 680 690 700 710 720 160 170 FLJ002 SPQYPPTHPQQLTRPQAATKNHTKK . : :: .::: .::: . . .. KIAA11 GRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSGRDQE 730 740 750 760 770 780 >>KIAA1753 ( 818 res) pj02614 (818 aa) initn: 101 init1: 71 opt: 106 Z-score: 92.2 bits: 25.8 E(): 6.2 Smith-Waterman score: 118; 27.273% identity (50.413% similar) in 121 aa overlap (45-153:254-372) 20 30 40 50 60 70 FLJ002 SPFFLLGMGAQIGRGKLIFCSLFERMIHSHSPKLRRYRREVSPSHLVLSPEFFMNPCRHV ::. ..:: :: : . . .: . KIAA17 YKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRS--SPCPNVKHGDEWGDPGKCE 230 240 250 260 270 280 80 90 100 110 120 FLJ002 LCILSQYVHTHTHTHTHTHTHTHARVSSFYRNGNILKVLFCTFT-VQVPNT-----PPRT :: ::.:. . : . . .. ... ..:. . ::.:. :. : : . KIAA17 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSA 290 300 310 320 330 340 130 140 150 160 170 FLJ002 CPRP-QPGK-----GGAGTWPPSSASSAHSPQYPPTHPQQLTRPQAATKNHTKK : ::: ..:: : : :: :.: KIAA17 VSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKP 350 360 370 380 390 400 KIAA17 PNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLL 410 420 430 440 450 460 >>KIAA1545 ( 968 res) fj14026s1 (968 aa) initn: 159 init1: 97 opt: 107 Z-score: 92.2 bits: 26.0 E(): 6.2 Smith-Waterman score: 131; 28.000% identity (44.800% similar) in 125 aa overlap (40-160:321-429) 10 20 30 40 50 60 FLJ002 LSNSLSPFFLLGMGAQIGRGKLIFCSLFERMIHSHSPKLRRYRREVSPSHLVLS---PEF .. .: . :.:.. :: : : KIAA15 RSQAQHQLHAAMFAAPPTLPPPPALPASSLVLPGHPADHELLRQELNTRFLVQSAERPGA 300 310 320 330 340 350 70 80 90 100 110 120 FLJ002 FMNPCRHVLCILSQYVHTHTHTHTHTHTHTHARVSSFYRNGNILKVLFCTFTVQVPNTPP ..: . . :. ::: ::: ::: : :. : : . .: ::: KIAA15 SLGPGALLRAEFHQHQHTHQHTHQHTHQHQHT---------------FAPFPAGLPPTPP 360 370 380 390 130 140 150 160 170 FLJ002 RTCPRPQPGKGGAGTWPPSSASS-AHSPQYPPTHPQQLTRPQAATKNHTKK . : : . : :: . :..::. : KIAA15 -AAPPPFDKYAPKLDSPYFRHSSVSFFPSFPPAIPGLPTLLPHPGPFGSLQGAFQPKVSD 400 410 420 430 440 450 KIAA15 PYRAVVKVSTCWEGPWQGRTLVPPGRPRGARDSRSLQKTWVGVAPAPLSASILSQKPGRW 460 470 480 490 500 510 >>FLJ00327 ( 266 res) sj02293 (266 aa) initn: 91 init1: 67 opt: 95 Z-score: 89.0 bits: 23.6 E(): 9.3 Smith-Waterman score: 95; 32.203% identity (54.237% similar) in 59 aa overlap (95-153:187-241) 70 80 90 100 110 120 FLJ002 EFFMNPCRHVLCILSQYVHTHTHTHTHTHTHTHARVSSFYRNGNILKVLFCTFTVQVPNT : . : . : .. :: :.: : . FLJ003 DVLVHRLLAAALGYRERLDMAPDTLQKQADHCNDRRMASKRVQELSTSLF--FAVLVKVS 160 170 180 190 200 210 130 140 150 160 170 FLJ002 PPRTCPRPQPGKGGAGTWPPSSASSAHSPQYPPTHPQQLTRPQAATKNHTKK :: :: : :. :. .: :. ...:: FLJ003 PPAWCPSP-PS-GSRPSWAPAHQEASRSPGQCQEVPWLQHCPCRRVAPWSQKPW 220 230 240 250 260 >>KIAA1555 ( 2414 res) fh17482s2 (2414 aa) initn: 116 init1: 88 opt: 108 Z-score: 88.9 bits: 26.7 E(): 9.4 Smith-Waterman score: 108; 40.000% identity (53.333% similar) in 45 aa overlap (122-165:2316-2359) 100 110 120 130 140 150 FLJ002 THTHTHARVSSFYRNGNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASSAH : ::: : ::: :. .: .: : : . KIAA15 RERTGGGPGRPPDWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGRRAAQSWSPR-LESPR 2290 2300 2310 2320 2330 2340 160 170 FLJ002 SPQYP-PTHPQQLTRPQAATKNHTKK .: : :. : : KIAA15 APANPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRTRQDSPKPSGSGEPRAHPH 2350 2360 2370 2380 2390 2400 >>FLJ00386 ( 811 res) sj04204 (811 aa) initn: 107 init1: 69 opt: 101 Z-score: 88.5 bits: 25.1 E(): 9.9 Smith-Waterman score: 101; 35.714% identity (57.143% similar) in 56 aa overlap (119-169:465-518) 90 100 110 120 130 140 FLJ002 HTHTHTHTHARVSSFYRNGNILKVLFCTFTVQVPNT-PPRTCPRPQPGKGGAGTWPPSSA ::.:.. :: : ::::. .. : :.. FLJ003 SSSIPLGRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQ--PSSQPNSNV 440 450 460 470 480 490 150 160 170 FLJ002 SSAHSPQ----YPPTHPQQLTRPQAATKNHTKK ::. .:. : :: : .: FLJ003 SSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAEE 500 510 520 530 540 550 >>KIAA1639 ( 2584 res) af14886 (2584 aa) initn: 115 init1: 65 opt: 107 Z-score: 87.9 bits: 26.6 E(): 11 Smith-Waterman score: 107; 40.000% identity (60.000% similar) in 40 aa overlap (124-163:868-906) 100 110 120 130 140 150 FLJ002 THTHARVSSFYRNGNILKVLFCTFTVQVPNTPPRTCPRPQPGKGGAGTWPPSSASSAHSP : : ::: :. .:. :: ...: ..: KIAA16 TTLERADQEVTSVLKRLLGPKAPGPSTGDLTGPGPCPRGAPALQETGSQPPVTGTS-EAP 840 850 860 870 880 890 160 170 FLJ002 QYPPTHPQQLTRPQAATKNHTKK :: :: : KIAA16 AVPPRVPQPLLHEGPEQEPEAIARAQEWTVPIRMEGAAWPGAGTGELLWDVHSHVVRETT 900 910 920 930 940 950 176 residues in 1 query sequences 2210818 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:48 2009 done: Fri Feb 27 10:50:48 2009 Total Scan time: 0.360 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]