# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh01653.fasta.nr -Q ../query/FLJ00278.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00278, 176 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824447 sequences Expectation_n fit: rho(ln(x))= 5.2068+/-0.000191; mu= 7.5621+/- 0.011 mean_var=86.8204+/-16.415, 0's: 37 Z-trim: 41 B-trim: 0 in 0/66 Lambda= 0.137646 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748490|dbj|BAC03382.1| FLJ00278 protein [Homo ( 176) 1250 257.1 9.6e-67 >>gi|21748490|dbj|BAC03382.1| FLJ00278 protein [Homo sap (176 aa) initn: 1250 init1: 1250 opt: 1250 Z-score: 1354.5 bits: 257.1 E(): 9.6e-67 Smith-Waterman score: 1250; 100.000% identity (100.000% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 FLJ002 AELGYKHPGLSNSLSPFFLLGMGAQIGRGKLIFCSLFERMIHSHSPKLRRYRREVSPSHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AELGYKHPGLSNSLSPFFLLGMGAQIGRGKLIFCSLFERMIHSHSPKLRRYRREVSPSHL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 VLSPEFFMNPCRHVLCILSQYVHTHTHTHTHTHTHTHARVSSFYRNGNILKVLFCTFTVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VLSPEFFMNPCRHVLCILSQYVHTHTHTHTHTHTHTHARVSSFYRNGNILKVLFCTFTVQ 70 80 90 100 110 120 130 140 150 160 170 FLJ002 VPNTPPRTCPRPQPGKGGAGTWPPSSASSAHSPQYPPTHPQQLTRPQAATKNHTKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VPNTPPRTCPRPQPGKGGAGTWPPSSASSAHSPQYPPTHPQQLTRPQAATKNHTKK 130 140 150 160 170 176 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 05:51:37 2009 done: Sat Feb 28 05:55:53 2009 Total Scan time: 617.140 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]