# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh01893.fasta.huge -Q ../query/FLJ00129.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00129, 668 aa vs ./tmplib.10216 library 2210326 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3627+/-0.0039; mu= 18.4469+/- 0.264 mean_var=82.9267+/-18.266, 0's: 0 Z-trim: 2 B-trim: 21 in 1/39 Lambda= 0.140840 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00142 ( 674 res) sh04107 ( 674) 4512 926.9 0 KIAA0634 ( 1321 res) hj03064 (1321) 111 33.0 0.25 FLJ00296 ( 187 res) sh03944 ( 187) 81 25.8 5.1 KIAA1068 ( 354 res) hj05437 ( 354) 83 26.6 5.7 KIAA1878 ( 453 res) pj01649 ( 453) 84 26.9 5.8 KIAA1386 ( 1214 res) fj06274 (1214) 88 28.3 6 KIAA0980 ( 1406 res) hj07083 (1406) 87 28.2 7.6 KIAA1787 ( 1564 res) fh19054 (1564) 86 28.0 9.3 KIAA0091 ( 1058 res) ha01032 (1058) 84 27.4 9.7 FLJ00377 ( 190 res) sh08074 ( 190) 76 24.8 10 KIAA0701 ( 1354 res) hg01611s1 (1354) 84 27.5 11 KIAA1439 ( 561 res) hg01641b ( 561) 80 26.2 12 KIAA0935 ( 952 res) af13188 ( 952) 82 26.9 12 FLJ00115 ( 757 res) as00115 ( 757) 79 26.2 16 KIAA1061 ( 693 res) hj00491 ( 693) 78 26.0 17 KIAA1218 ( 864 res) fh03016 ( 864) 78 26.1 20 KIAA0249 ( 902 res) ha07006 ( 902) 78 26.1 21 KIAA1004 ( 1163 res) hj01244 (1163) 79 26.4 21 KIAA1108 ( 763 res) hh03387s1 ( 763) 77 25.8 21 KIAA1944 ( 657 res) fh11215 ( 657) 76 25.5 22 FLJ00375 ( 708 res) sh07824 ( 708) 76 25.6 23 KIAA1730 ( 787 res) pg01135 ( 787) 76 25.6 25 FLJ00183 ( 227 res) sj01602 ( 227) 70 23.7 27 KIAA0482 ( 1332 res) hj01880 (1332) 77 26.1 30 KIAA0236 ( 1696 res) ha04654 (1696) 78 26.5 30 FLJ00319 ( 456 res) sh07415 ( 456) 72 24.5 31 KIAA0584 ( 738 res) hj00933 ( 738) 74 25.2 32 KIAA1355 ( 1189 res) fj01564 (1189) 76 25.8 32 KIAA1030 ( 763 res) fh00432 ( 763) 74 25.2 32 KIAA0130 ( 1006 res) ha01208 (1006) 75 25.6 33 KIAA0495 ( 209 res) hg00106 ( 209) 68 23.3 34 KIAA1170 ( 838 res) hg04224(revised) ( 838) 74 25.2 34 KIAA1822 ( 533 res) fh13781 ( 533) 72 24.6 34 FLJ00091 ( 170 res) as00091 ( 170) 67 22.9 34 KIAA0469 ( 559 res) hg01666 ( 559) 72 24.6 35 FLJ00150 ( 1793 res) sh05613 (1793) 77 26.3 36 FLJ00204 ( 573 res) sj04432 ( 573) 72 24.6 36 KIAA1747 ( 791 res) pj02023 ( 791) 73 25.0 38 KIAA1926 ( 412 res) hh10052 ( 412) 70 24.0 39 KIAA1882 ( 1176 res) aj00515 (1176) 74 25.4 42 KIAA0851 ( 607 res) hk06032 ( 607) 71 24.5 43 KIAA1799 ( 610 res) fj20761 ( 610) 71 24.5 43 KIAA0114 ( 79 res) ha00680 ( 79) 62 21.5 43 KIAA1527 ( 801 res) fj06850s1 ( 801) 72 24.8 44 FLJ00302 ( 853 res) sh04964 ( 853) 72 24.9 46 KIAA0401 ( 344 res) hg01095 ( 344) 68 23.5 46 KIAA1996 ( 437 res) bj00079 ( 437) 69 23.9 46 KIAA0780 ( 1100 res) hk05362 (1100) 73 25.2 47 FLJ00004 ( 698 res) as00004 ( 698) 71 24.5 47 KIAA0839 ( 1393 res) hk04507s1 (1393) 74 25.5 47 >>FLJ00142 ( 674 res) sh04107 (674 aa) initn: 4512 init1: 4512 opt: 4512 Z-score: 4953.3 bits: 926.9 E(): 0 Smith-Waterman score: 4512; 100.000% identity (100.000% similar) in 657 aa overlap (12-668:18-674) 10 20 30 40 50 FLJ001 LKFLFQVYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGSGSIDPDELRTVLQ ::::::::::::::::::::::::::::::::::::::::::: FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGAGAGPHWASSPLGTGSGSIDPDELRTVLQ 10 20 30 40 50 60 60 70 80 90 100 110 FLJ001 SCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 SCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHW 70 80 90 100 110 120 120 130 140 150 160 170 FLJ001 LTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMVAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 LTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMVAK 130 140 150 160 170 180 180 190 200 210 220 230 FLJ001 GCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVA 190 200 210 220 230 240 240 250 260 270 280 290 FLJ001 HTVNFVLQAQAEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLFMFICSSSCIRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 HTVNFVLQAQAEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLFMFICSSSCIRR 250 260 270 280 290 300 300 310 320 330 340 350 FLJ001 SGHFEVFYWTHLSYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAAVCIMEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 SGHFEVFYWTHLSYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAAVCIMEV 310 320 330 340 350 360 360 370 380 390 400 410 FLJ001 NLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 NLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQ 370 380 390 400 410 420 420 430 440 450 460 470 FLJ001 GQWTNRLYESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GQWTNRLYESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPY 430 440 450 460 470 480 480 490 500 510 520 530 FLJ001 GTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKL 490 500 510 520 530 540 540 550 560 570 580 590 FLJ001 HKVDFIWINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 HKVDFIWINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQ 550 560 570 580 590 600 600 610 620 630 640 650 FLJ001 MALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALAKVLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 MALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALAKVLKG 610 620 630 640 650 660 660 FLJ001 HCEKFGFRFFQENF :::::::::::::: FLJ001 HCEKFGFRFFQENF 670 >>KIAA0634 ( 1321 res) hj03064 (1321 aa) initn: 68 init1: 68 opt: 111 Z-score: 117.2 bits: 33.0 E(): 0.25 Smith-Waterman score: 111; 29.221% identity (59.740% similar) in 154 aa overlap (14-164:119-264) 10 20 30 40 FLJ001 LKFLFQVYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGS-G :: ::.::: ::::. :.:: . :: : KIAA06 SREPDSPCRLKTVTVSTLPALRESDIGWSGARAGAGAGT--GAGAAAA-AASPGSPGSAG 90 100 110 120 130 140 50 60 70 80 90 100 FLJ001 SIDPDELRTVLQSCLRESAISLPDEKLDQLTLALFESADADGNGA-ITFEELRDELQRFP . ..: ... : . :.. :. ::. : .: . . .:..: :.. . :.. . KIAA06 TAAESRLLLFVRNEL-PGRIAVQDD-LDNTELPFF-TLEMSGTAADISLVHWRQQWLENG 150 160 170 180 190 200 110 120 130 140 150 160 FLJ001 GVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHN-HRSQLFCLATYAGLHVLLFGLAA .. ....:.. : : : : ..: .... : : : . : . : .:.: .: KIAA06 TLYFHVSMSSSGQL-AQATAPTLQEPSEIVEEQMHILHISVMGGLIALL-LLLLVFTVAL 210 220 230 240 250 260 170 180 190 200 210 220 FLJ001 SAHRDLGASVMVAKGCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLM :.: KIAA06 YAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRSSRLQTHNSVIGVPIRET 270 280 290 300 310 320 >>FLJ00296 ( 187 res) sh03944 (187 aa) initn: 72 init1: 72 opt: 81 Z-score: 93.6 bits: 25.8 E(): 5.1 Smith-Waterman score: 81; 31.183% identity (51.613% similar) in 93 aa overlap (15-102:89-175) 10 20 30 40 FLJ001 LKFLFQVYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGSGSI : : .:. :: : :: :: ::. .: . FLJ002 CASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGS-WGQGPGPSIAS--LGS-DGRL 60 70 80 90 100 110 50 60 70 80 90 FLJ001 ---DPDELRTVLQSCLRESAISLPDEKLDQLTLA--LFESADADGNGAITFEELRDELQR :: .: ..: .. :: .: ..: : : . .:.. : : : . FLJ002 CLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLF-- 120 130 140 150 160 170 100 110 120 130 140 150 FLJ001 FPGVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLA .:: FLJ002 LPGDCWVLRKEPPAP 180 >>KIAA1068 ( 354 res) hj05437 (354 aa) initn: 55 init1: 55 opt: 83 Z-score: 92.8 bits: 26.6 E(): 5.7 Smith-Waterman score: 83; 23.684% identity (56.579% similar) in 76 aa overlap (337-407:206-281) 310 320 330 340 350 360 FLJ001 SYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAA-VCIMEVN----LLPSKV : ...:.: . : ..: : :. .:. KIAA10 NGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKL 180 190 200 210 220 230 370 380 390 400 410 420 FLJ001 THLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRL :: . . .. .:: . .:. ...: :. . . : . : : KIAA10 THKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEEEQ 240 250 260 270 280 290 430 440 450 460 470 480 FLJ001 YESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRI KIAA10 AVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQF 300 310 320 330 340 350 >>KIAA1878 ( 453 res) pj01649 (453 aa) initn: 98 init1: 56 opt: 84 Z-score: 92.7 bits: 26.9 E(): 5.8 Smith-Waterman score: 84; 26.455% identity (49.206% similar) in 189 aa overlap (9-178:89-270) 10 20 30 FLJ001 LKFLFQVYDIDVCARQ-GASAGT--EWGAGAGPHWASS ..:. :: : . : : .::: .. KIAA18 QPPPPQQQAQPALAPPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 PLGTGSGSID-PDELRTVLQSCLRESAISLPDEKLDQLTLALFESADADGNGAITFE-EL : :::: . : . .:... : .. :. . . .. .:: . .. .. KIAA18 GPGLGSGSTSGPAD--SVMRQDYRAWKVQRPEPSCRPRSE--YQPSDAPFERETQYQKDF 120 130 140 150 160 170 100 110 120 130 140 FLJ001 RD-ELQR---FPGVMENLTISAAHWLTAP---APRPRPRRPRQLTRAYWHNHRSQLFCLA : : : : . . . :::: .:: ::. ::. .. . : : : KIAA18 RAWPLPRRGDHPWIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQE---A 180 190 200 210 220 230 150 160 170 180 190 FLJ001 TYAGLHVLLFGLAASA-HRDL----GASVMV--AKGCGQCLNFDCSFIAVLMLRRCLTWL . .: : : :..: .:: : . :: :.: :. KIAA18 APGGAGGLAAGKASGADERDTRRKAGPAWMVRRAEGLGHEQTPLPAAQAQVQATGPEAGR 240 250 260 270 280 290 200 210 220 230 240 250 FLJ001 RATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVAHTVNFVLQAQAEASPFQFWELLLTT KIAA18 GRAAADALNRQIREEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYS 300 310 320 330 340 350 >>KIAA1386 ( 1214 res) fj06274 (1214 aa) initn: 136 init1: 54 opt: 88 Z-score: 92.4 bits: 28.3 E(): 6 Smith-Waterman score: 88; 23.810% identity (51.020% similar) in 147 aa overlap (504-646:648-790) 480 490 500 510 520 530 FLJ001 YGTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHT-CPSCQHSWIEGVQDNM .: . ... .: : .:.... .. KIAA13 PEELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEW 620 630 640 650 660 670 540 550 560 570 580 FLJ001 KLHKVDFIWINRDQRSFE--WFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALG-KNDMK : :. . : : .: : .: :: : .. :: :: .: :: . KIAA13 KKHSSSTGGYYRCTR-YEVIQHVEEQSK-EMTVEAEKKHKRFQELDRFMHYYTRFKNHEH 680 690 700 710 720 730 590 600 610 620 630 640 FLJ001 AIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALA . :.. : : . ::: .... .:. : :: . . . : . : . ... :. : KIAA13 SYQLEQRL-LKTAKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTR-RILKCSYPYGF 740 750 760 770 780 790 650 660 FLJ001 KVLKGHCEKFGFRFFQENF KIAA13 FLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIKAACLVQQKRQEFLASV 800 810 820 830 840 850 >>KIAA0980 ( 1406 res) hj07083 (1406 aa) initn: 133 init1: 64 opt: 87 Z-score: 90.6 bits: 28.2 E(): 7.6 Smith-Waterman score: 87; 35.593% identity (66.102% similar) in 59 aa overlap (37-94:232-283) 10 20 30 40 50 60 FLJ001 VYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGS-GSIDPDELRTVLQSCLRESAISLP ::.:: : .. .:: .: :: .. : KIAA09 WDSEDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQG---LE 210 220 230 240 250 70 80 90 100 110 120 FLJ001 DEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHWLTAPAPRPRPR :.:..: :.. : ::.: ...::.. KIAA09 KEELEDL----FNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPE 260 270 280 290 300 310 >>KIAA1787 ( 1564 res) fh19054 (1564 aa) initn: 119 init1: 65 opt: 86 Z-score: 88.9 bits: 28.0 E(): 9.3 Smith-Waterman score: 87; 27.907% identity (53.488% similar) in 86 aa overlap (11-84:2-86) 10 20 30 40 FLJ001 LKFLFQVYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGSGS-----------IDPDEL .. : .:.:.:. : : :: ...: :.::: . : KIAA17 AEMAAGSGGSGGSGGGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTG 10 20 30 40 50 50 60 70 80 90 100 FLJ001 RTV-LQSCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLT : : :..: : . . : ..... :.: . :: KIAA17 RLVSLSACGRTARRQQPGQEFNH-GLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTA 60 70 80 90 100 110 110 120 130 140 150 160 FLJ001 ISAAHWLTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGA KIAA17 LDPSVLDFPSSATGLKGGSWVVSGCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTVAGE 120 130 140 150 160 170 >>KIAA0091 ( 1058 res) ha01032 (1058 aa) initn: 79 init1: 55 opt: 84 Z-score: 88.6 bits: 27.4 E(): 9.7 Smith-Waterman score: 84; 39.130% identity (60.870% similar) in 46 aa overlap (84-128:897-935) 60 70 80 90 100 110 FLJ001 QSCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELR-DELQRFPGVMENLTISAA : :..: :... ..:.:. :.: : KIAA00 WLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERMEGNHLHRYSKVLE------A 870 880 890 900 910 920 120 130 140 150 160 170 FLJ001 HWLTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMV : : : ::: : :: KIAA00 H-LGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKVVLPNFRSNRPQVR 930 940 950 960 970 >>FLJ00377 ( 190 res) sh08074 (190 aa) initn: 76 init1: 76 opt: 76 Z-score: 88.1 bits: 24.8 E(): 10 Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (472-506:44-78) 450 460 470 480 490 500 FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS ::.: . . .:..:: :..:.. FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP 20 30 40 50 60 70 510 520 530 540 550 560 FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM ::::: FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS 80 90 100 110 120 130 668 residues in 1 query sequences 2210326 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:40:19 2009 done: Fri Feb 27 10:40:20 2009 Total Scan time: 0.660 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]