# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh01962.fasta.nr -Q ../query/FLJ00131.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00131, 173 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826464 sequences Expectation_n fit: rho(ln(x))= 5.0618+/-0.000184; mu= 8.8382+/- 0.010 mean_var=77.0232+/-14.665, 0's: 40 Z-trim: 42 B-trim: 2 in 1/67 Lambda= 0.146138 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676468|dbj|BAB84886.1| FLJ00131 protein [Homo ( 173) 1226 266.8 1.1e-69 gi|119600672|gb|EAW80266.1| hCG1996178 [Homo sapie ( 136) 988 216.6 1.2e-54 >>gi|18676468|dbj|BAB84886.1| FLJ00131 protein [Homo sap (173 aa) initn: 1226 init1: 1226 opt: 1226 Z-score: 1407.2 bits: 266.8 E(): 1.1e-69 Smith-Waterman score: 1226; 100.000% identity (100.000% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 FLJ001 LYSRSCCFASVSGGWCLVKGDCSRSARLGSWPKRGGWDTGGGKRQCEPGPQDKVQKASPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LYSRSCCFASVSGGWCLVKGDCSRSARLGSWPKRGGWDTGGGKRQCEPGPQDKVQKASPR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 ELSPNVCPSHSSGGAIRVKYPSGVPRVLPYAWFPTTSTRLGPPAGGGAEFLSGAQRAVEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ELSPNVCPSHSSGGAIRVKYPSGVPRVLPYAWFPTTSTRLGPPAGGGAEFLSGAQRAVEA 70 80 90 100 110 120 130 140 150 160 170 FLJ001 QKPSFQERGHDGEVVGQERDALQESLPEVTLFSSAATDGPTHLHLFSDHLKLT ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 QKPSFQERGHDGEVVGQERDALQESLPEVTLFSSAATDGPTHLHLFSDHLKLT 130 140 150 160 170 >>gi|119600672|gb|EAW80266.1| hCG1996178 [Homo sapiens] (136 aa) initn: 988 init1: 988 opt: 988 Z-score: 1137.4 bits: 216.6 E(): 1.2e-54 Smith-Waterman score: 988; 100.000% identity (100.000% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 FLJ001 LYSRSCCFASVSGGWCLVKGDCSRSARLGSWPKRGGWDTGGGKRQCEPGPQDKVQKASPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYSRSCCFASVSGGWCLVKGDCSRSARLGSWPKRGGWDTGGGKRQCEPGPQDKVQKASPR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 ELSPNVCPSHSSGGAIRVKYPSGVPRVLPYAWFPTTSTRLGPPAGGGAEFLSGAQRAVEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ELSPNVCPSHSSGGAIRVKYPSGVPRVLPYAWFPTTSTRLGPPAGGGAEFLSGAQRAVEA 70 80 90 100 110 120 130 140 150 160 170 FLJ001 QKPSFQERGHDGEVVGQERDALQESLPEVTLFSSAATDGPTHLHLFSDHLKLT :::::::::::::::: gi|119 QKPSFQERGHDGEVVG 130 173 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 02:53:57 2009 done: Sat Feb 28 02:58:20 2009 Total Scan time: 630.870 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]