# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh01989.fasta.huge -Q ../query/FLJ00282.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00282, 117 aa vs ./tmplib.10216 library 2210877 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.2524+/-0.00329; mu= 8.4607+/- 0.223 mean_var=57.4763+/-12.379, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.169172 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1215 ( 575 res) fh01854 ( 575) 72 25.8 2.9 KIAA1922 ( 370 res) fh11169 ( 370) 69 24.9 3.5 KIAA1481 ( 1380 res) fj05724 (1380) 74 26.6 3.8 KIAA1217 ( 1339 res) fh03001s1 (1339) 72 26.1 5.3 KIAA0596 ( 1531 res) hg01605 (1531) 71 25.9 6.9 KIAA2005 ( 1587 res) eg01633 (1587) 71 26.0 7 FLJ00368 ( 299 res) sh06338 ( 299) 63 23.3 8.2 KIAA0226 ( 973 res) fg02838 ( 973) 68 25.0 8.2 KIAA1086 ( 902 res) hj08218 ( 902) 67 24.7 9.2 KIAA0056 ( 1507 res) ha01062 (1507) 69 25.4 9.5 KIAA0074 ( 747 res) ha01438 ( 747) 66 24.4 9.5 KIAA1799 ( 610 res) fj20761 ( 610) 65 24.1 9.8 KIAA0445 ( 1919 res) hg00102s1 (1919) 68 25.3 13 KIAA0233 ( 2035 res) ha04602 (2035) 68 25.3 14 KIAA1913 ( 509 res) fk05496 ( 509) 62 23.3 14 KIAA0721 ( 433 res) hk01908 ( 433) 61 23.0 15 FLJ00131 ( 173 res) sh01962 ( 173) 57 21.6 15 KIAA1105 ( 730 res) hh02687(revised) ( 730) 63 23.7 16 KIAA0380 ( 1539 res) hh00518 (1539) 65 24.5 19 KIAA1867 ( 779 res) fj18636 ( 779) 62 23.5 19 KIAA0206 ( 193 res) ha04806 ( 193) 56 21.4 20 KIAA0415 ( 634 res) hh00186 ( 634) 61 23.1 20 KIAA1601 ( 690 res) fj10228 ( 690) 61 23.2 21 KIAA1244 ( 1872 res) hf00438s1 (1872) 65 24.6 22 KIAA1240 ( 733 res) fh10357 ( 733) 61 23.2 22 KIAA1600 ( 741 res) fj10035s1 ( 741) 61 23.2 22 KIAA1174 ( 430 res) hh05825a ( 430) 58 22.2 25 KIAA1925 ( 1147 res) fj02353(revised) (1147) 62 23.6 25 KIAA1423 ( 616 res) fh08369(revised) ( 616) 59 22.6 27 KIAA1584 ( 995 res) fj06751 ( 995) 61 23.3 27 KIAA1999 ( 1275 res) bf00346(revised) (1275) 62 23.7 27 KIAA0892 ( 621 res) hk08289 ( 621) 58 22.4 32 FLJ00288 ( 217 res) sh02579 ( 217) 53 20.8 35 KIAA0059 ( 724 res) ha00949s1 ( 724) 58 22.5 36 FLJ00186 ( 185 res) sj02022 ( 185) 52 20.4 37 KIAA1615 ( 484 res) fj13419 ( 484) 56 21.8 38 KIAA0291 ( 1024 res) fh25236 (1024) 59 22.8 39 FLJ00335 ( 157 res) sj05150 ( 157) 51 20.1 39 KIAA1854 ( 572 res) fg02232 ( 572) 56 21.9 42 KIAA0939 ( 595 res) hh04825s1 ( 595) 56 21.9 44 KIAA0657 ( 1237 res) hk01859s1 (1237) 59 22.9 44 KIAA0604 ( 773 res) hg02198b ( 773) 57 22.2 44 KIAA1238 ( 408 res) fh09938 ( 408) 54 21.3 47 KIAA1032 ( 1702 res) ff09715 (1702) 60 23.3 47 KIAA1111 ( 1084 res) hj04651s1 (1084) 58 22.6 48 KIAA0141 ( 536 res) ha03721 ( 536) 55 21.6 48 KIAA1119 ( 1854 res) hf00569y1 (1854) 60 23.3 50 KIAA0632 ( 727 res) hh01900 ( 727) 56 22.0 50 KIAA0866 ( 1984 res) hk00546s1 (1984) 60 23.4 53 KIAA0953 ( 789 res) hj05484 ( 789) 56 22.0 53 >>KIAA1215 ( 575 res) fh01854 (575 aa) initn: 36 init1: 36 opt: 72 Z-score: 98.2 bits: 25.8 E(): 2.9 Smith-Waterman score: 72; 25.397% identity (61.905% similar) in 63 aa overlap (55-117:512-572) 30 40 50 60 70 80 FLJ002 GVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHITNGTLTGVLSLSELKRSEL :. :. ... .::: :.. : :::... KIAA12 ITHDMTPKAFLERYLAAGPTIQYHKERWLAKQWTLVSEEPVTNGLKDGIVFL--LKRQDF 490 500 510 520 530 90 100 110 FLJ002 NKTLQTLSETYFIMCATAEGPKHIKLYIHNKTE . ...: . .: . :: :. .. ..: KIAA12 SLVVSTKKVPFFKLSEEFVDPKSHKFVMRLQSETSV 540 550 560 570 >>KIAA1922 ( 370 res) fh11169 (370 aa) initn: 54 init1: 54 opt: 69 Z-score: 96.7 bits: 24.9 E(): 3.5 Smith-Waterman score: 69; 28.571% identity (53.846% similar) in 91 aa overlap (25-109:50-138) 10 20 30 40 FLJ002 ILLTMQHINTGIDMLNQLGCVFFAGVKPQRN---ICNLSSICN--DSAFFRGEI : .:.:. :. :: :.. . :. KIAA19 KRTADDSFGSLRGLSAQQTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSTLHKHEL 20 30 40 50 60 70 50 60 70 80 90 100 FLJ002 MFQYDKESTVPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSE-TYFIMCATAEGPKHI . : : .. .: . ::: :: :: .: :.. :: : . : : : .. ... KIAA19 QVQ-DMRGRYEASQDLL-GTLRKQLSDSESERRALEEQLQRLRDKTDSTMQAHEDAQREV 80 90 100 110 120 130 110 FLJ002 KLYIHNKTE . KIAA19 QRLRSAKELLRREKSNLAHSLQVAQQQAKELRQERKKLQAAQEELRRQRYWLGEEQEDAV 140 150 160 170 180 190 >>KIAA1481 ( 1380 res) fj05724 (1380 aa) initn: 48 init1: 48 opt: 74 Z-score: 95.9 bits: 26.6 E(): 3.8 Smith-Waterman score: 74; 28.846% identity (55.769% similar) in 52 aa overlap (19-70:186-237) 10 20 30 40 FLJ002 ILLTMQHINTGIDMLNQLGCVFFAGVKPQRNICNLSSICNDSAFFRGE : : . .:.:.. . :. :: ... KIAA14 FQYGKPHCSVLEKVSKFEQREQGSQRPSVGGSGFGHNYRPHRTVSTSSTSGNDFEETKAH 160 170 180 190 200 210 50 60 70 80 90 100 FLJ002 IMFQYDKESTVPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEGPKHI : :. . : .::. :: : KIAA14 IRFSESAEPLGNGEQHFKNGELKLEEASRQPCGQQLSGGASDSGRGPQRPDARLLRSQST 220 230 240 250 260 270 >>KIAA1217 ( 1339 res) fh03001s1 (1339 aa) initn: 68 init1: 68 opt: 72 Z-score: 93.4 bits: 26.1 E(): 5.3 Smith-Waterman score: 72; 42.500% identity (60.000% similar) in 40 aa overlap (56-93:621-660) 30 40 50 60 70 80 FLJ002 VKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHITNGTLTGVLSLSELKRS--E ::::: .: :: . .:: :..:: : KIAA12 EKMMKTTANRNHTDSAGTPHVSGGKMLSALESTVPPSQPPPVGTSAIHMSLLEMRRSVAE 600 610 620 630 640 650 90 100 110 FLJ002 LNKTLQTLSETYFIMCATAEGPKHIKLYIHNKTE : :: . . KIAA12 LRLQLQQMRQLQLQNQELLRAMMKKAELEISGKVMETMKRLEDPVQRQRVLVEQERQKYL 660 670 680 690 700 710 >>KIAA0596 ( 1531 res) hg01605 (1531 aa) initn: 48 init1: 48 opt: 71 Z-score: 91.4 bits: 25.9 E(): 6.9 Smith-Waterman score: 71; 28.261% identity (60.870% similar) in 46 aa overlap (60-105:506-549) 30 40 50 60 70 80 FLJ002 RNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHITNGTLTGVLSLSELKRSELNKTLQ :..::...: :.: . ::. :.. :. KIAA05 ALLDTELPGGDKADASLLDPRVGIRSVCVSPNGQHLASGDRMGTLRVHELQ--SLSEMLK 480 490 500 510 520 530 90 100 110 FLJ002 TLSETYFIMCATAEGPKHIKLYIHNKTE . .. :.: : KIAA05 VEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFA 540 550 560 570 580 590 >>KIAA2005 ( 1587 res) eg01633 (1587 aa) initn: 72 init1: 48 opt: 71 Z-score: 91.2 bits: 26.0 E(): 7 Smith-Waterman score: 81; 28.125% identity (54.167% similar) in 96 aa overlap (37-115:317-409) 10 20 30 40 50 60 FLJ002 HINTGIDMLNQLGCVFFAGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHIT :::::. :. :..: :.. :::... KIAA20 IREPRFVEVLLQNNTPSDRFVIEVDTIPKHSICNDKYFY---IQMQICKDKIWKQNQNLS 290 300 310 320 330 340 70 80 90 100 FLJ002 -----NGTLTGVLSLSELKRSELNKTLQTLS----------ETYFI--MCATAEGPKHIK ... .:. :. . ... ::.:. : : . : .:: : .: KIAA20 LFVREGASSRDILANSKQRDVDFKAFLQNLKSLVASRKEAEEEYGMKAMKKESEGLKLVK 350 360 370 380 390 400 110 FLJ002 LYIHNKTE : : :. KIAA20 LLIGNRDSLDNSYYDWYILVTNKCHPNQIKHLDFLKEIKWFAVLEFDPESMINGVVKAYK 410 420 430 440 450 460 >>FLJ00368 ( 299 res) sh06338 (299 aa) initn: 40 init1: 40 opt: 63 Z-score: 90.0 bits: 23.3 E(): 8.2 Smith-Waterman score: 63; 31.148% identity (65.574% similar) in 61 aa overlap (32-88:20-78) 10 20 30 40 50 FLJ002 LLTMQHINTGIDMLNQLGCVFFAGVKPQRNICNLSSICNDSAFFRGE-IMFQYD--KEST ::.. :::::.. ::. :.:. : :. FLJ003 TEAQSEGEVPARESGRSDAICSFV-ICNDSSL-RGQPIIFNPDFFVEKL 10 20 30 40 60 70 80 90 100 110 FLJ002 VPQNQHI-TNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEGPKHIKLYIHNKTE .. .: :. ..... : .: .:: . . FLJ003 RHEKPEIFTELVVSNITRLIDLPGTELAQLMGEVDLKLPGGAGPASGFFRSLMSLKRKEK 50 60 70 80 90 100 FLJ003 GVIFGSPLTEEGIAQIYQLIEYLHKNLRVEGLFRVPGNSVRQQILRDALNNGTDIDLESG 110 120 130 140 150 160 >>KIAA0226 ( 973 res) fg02838 (973 aa) initn: 74 init1: 47 opt: 68 Z-score: 89.9 bits: 25.0 E(): 8.2 Smith-Waterman score: 68; 27.941% identity (60.294% similar) in 68 aa overlap (39-103:424-491) 10 20 30 40 50 60 FLJ002 NTGIDMLNQLGCVFFAGVKPQRNICNLSSICNDSAFFRGEIMFQ-YDKESTVPQNQHIT- :::.: .:: . .. ..: ..:.. .. KIAA02 SHSDTSIASRGAPGGPRNITIIVEDPIAESCNDKAKLRGPLPYSGQSSEVSTPSSLYMEY 400 410 420 430 440 450 70 80 90 100 110 FLJ002 NGTLTGVLSLSELKR-SELNKTLQTLSETYFIMCATAEGPKHIKLYIHNKTE .: . . ..: :: .. .. ::: : :: : KIAA02 EGGRYLCSGEGMFRRPSEGQSLISYLSEQDFGSCADLEKENAHFSISESLIAAIELMKCN 460 470 480 490 500 510 KIAA02 MMSQCLEEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPMYQEAEHGSFRVTSSSSQF 520 530 540 550 560 570 >>KIAA1086 ( 902 res) hj08218 (902 aa) initn: 42 init1: 42 opt: 67 Z-score: 89.0 bits: 24.7 E(): 9.2 Smith-Waterman score: 67; 25.974% identity (62.338% similar) in 77 aa overlap (46-117:596-672) 20 30 40 50 60 70 FLJ002 NQLGCVFFAGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHITNGTL-TGVL ::. . ::.:.: . .. .:.. .:.: KIAA10 TEQELLAVQRAVSHAERALKLVSDTLAEEDRGRREEEGDKRSSVAPQTRVLKGVMRVGIL 570 580 590 600 610 620 80 90 100 110 FLJ002 SLSELKRSELNKTLQTL-SE--TYFIMCATAEG-PKHIKLYIHNKTE . . : :.. : : : :: :. .. :. :..... ... : KIAA10 AKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEYEVSSDPEANIVISS 630 640 650 660 670 680 KIAA10 CEEPRMQVTISVTSPLMREDPSTDPGVEEPQADAGDVLSPKKCLESLAALRHARWFQARA 690 700 710 720 730 740 >>KIAA0056 ( 1507 res) ha01062 (1507 aa) initn: 46 init1: 46 opt: 69 Z-score: 88.8 bits: 25.4 E(): 9.5 Smith-Waterman score: 69; 27.586% identity (62.069% similar) in 58 aa overlap (39-96:396-448) 10 20 30 40 50 60 FLJ002 NTGIDMLNQLGCVFFAGVKPQRNICNLSSICNDSAFFRGEIMFQYDKESTVPQNQHITNG :.. :.: . ...:.. : .:. KIAA00 LQHICAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAW-LYKYSRSSKIPHRVF---- 370 380 390 400 410 420 70 80 90 100 110 FLJ002 TLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEGPKHIKLYIHNKTE :: ::.: :: . :...::. . .. KIAA00 TLDVVLALLELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHC 430 440 450 460 470 480 117 residues in 1 query sequences 2210877 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:50:52 2009 done: Fri Feb 27 10:50:53 2009 Total Scan time: 0.300 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]