# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh02302.fasta.nr -Q ../query/FLJ00355.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00355, 469 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7823294 sequences Expectation_n fit: rho(ln(x))= 6.3863+/-0.000195; mu= 6.0896+/- 0.011 mean_var=107.3694+/-20.941, 0's: 29 Z-trim: 38 B-trim: 472 in 1/65 Lambda= 0.123775 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748562|dbj|BAC03418.1| FLJ00355 protein [Homo ( 469) 3122 568.0 1.8e-159 gi|38260694|gb|AAR15506.1| NOEL1C [Homo sapiens] ( 550) 3122 568.0 2.1e-159 gi|33439251|gb|AAQ18784.1| Rab11-family interactin ( 612) 3037 552.9 8.3e-155 gi|28273122|dbj|BAC56924.1| FLJ00294 protein [Homo ( 681) 3037 552.9 9e-155 gi|50659104|ref|NP_001002814.1| RAB11 family inter (1283) 3037 553.1 1.5e-154 gi|33439255|gb|AAQ18786.1| Rab11-family interactin (1283) 3037 553.1 1.5e-154 gi|50363230|ref|NP_001002233.1| RAB11 family inter ( 612) 3031 551.8 1.7e-154 gi|67472130|sp|Q6WKZ4.2|RFIP1_HUMAN RecName: Full= (1283) 3031 552.0 3.1e-154 gi|33439253|gb|AAQ18785.1| no Rab11-binding protei ( 504) 2805 511.4 2.1e-142 gi|33439257|gb|AAQ18787.1| no Rab11-binding protei ( 504) 2802 510.9 3.1e-142 gi|109086159|ref|XP_001089664.1| PREDICTED: simila (1275) 2656 485.1 4.5e-134 gi|73979203|ref|XP_539967.2| PREDICTED: similar to (1273) 1662 307.6 1.2e-80 gi|109504361|ref|XP_001070627.1| PREDICTED: simila ( 908) 852 162.8 3.2e-37 gi|124249097|ref|NP_001074282.1| RAB11 family inte (1166) 668 130.0 3.1e-27 gi|18042544|gb|AAL02425.2|AF237668_1 Rab11 family ( 673) 525 104.3 9.6e-20 gi|149541453|ref|XP_001519944.1| PREDICTED: simila (1348) 499 99.9 4.2e-18 gi|47847500|dbj|BAD21422.1| mFLJ00294 protein [Mus ( 163) 435 87.8 2.2e-15 gi|126304077|ref|XP_001381852.1| PREDICTED: simila (1290) 357 74.5 1.7e-10 gi|33439259|gb|AAQ18788.1| no Rab11-binding protei ( 439) 341 71.4 5.4e-10 gi|119931322|ref|XP_001252747.1| PREDICTED: simila ( 787) 323 68.3 7.9e-09 gi|193787318|dbj|BAG52524.1| unnamed protein produ ( 415) 269 58.5 3.8e-06 gi|68139024|gb|AAY86040.1| Rab11-family interactin ( 501) 269 58.5 4.4e-06 gi|119583753|gb|EAW63349.1| RAB11 family interacti ( 648) 269 58.6 5.4e-06 gi|78459239|gb|ABB43161.1| RAB11-family interactin ( 649) 269 58.6 5.4e-06 gi|50603589|gb|AAH77720.1| RAB11 family interactin ( 649) 263 57.5 1.1e-05 gi|20068811|gb|AAM09571.1|AF368294_1 Rab-coupling ( 649) 262 57.4 1.3e-05 gi|73979205|ref|XP_857501.1| PREDICTED: similar to ( 649) 251 55.4 5e-05 gi|38018633|gb|AAR08363.1| Rab coupling protein [M ( 217) 240 53.1 8.2e-05 gi|89273343|emb|CAJ81459.1| novel protein similar ( 996) 227 51.2 0.0014 gi|194226439|ref|XP_001915472.1| PREDICTED: RAB11 ( 650) 216 49.1 0.0038 gi|116138490|gb|AAI25401.1| Rab11fip1 protein [Mus ( 645) 209 47.9 0.009 gi|67472138|sp|Q9D620.1|RFIP1_MOUSE RecName: Full= ( 645) 209 47.9 0.009 >>gi|21748562|dbj|BAC03418.1| FLJ00355 protein [Homo sap (469 aa) initn: 3122 init1: 3122 opt: 3122 Z-score: 3019.2 bits: 568.0 E(): 1.8e-159 Smith-Waterman score: 3122; 100.000% identity (100.000% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVPSIDSMMRKLEEMGLNLRKDQKKTKKRVSFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 ESQAGSLVESKARDAAEEVAPPLPMGASVPSIDSMMRKLEEMGLNLRKDQKKTKKRVSFS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 EQLFTEEAVAGAALLVEGHSSCPQELNPAWSVAGNASDGEPPESPHAEDSERESVTTPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 EQLFTEEAVAGAALLVEGHSSCPQELNPAWSVAGNASDGEPPESPHAEDSERESVTTPGP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 ATCGAPASPADHLLLPSQEESFSEVPMSEASSAKDTPLFRMEGEDALVTQYQSKASDHEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 ATCGAPASPADHLLLPSQEESFSEVPMSEASSAKDTPLFRMEGEDALVTQYQSKASDHEG 130 140 150 160 170 180 190 200 210 220 230 240 FLJ003 LLSDPLSDLQLVSDFKSPIMADLNLSLPSIPEVASDDERIDQVEDDGDQVEDDGETAKSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LLSDPLSDLQLVSDFKSPIMADLNLSLPSIPEVASDDERIDQVEDDGDQVEDDGETAKSS 190 200 210 220 230 240 250 260 270 280 290 300 FLJ003 TLDIGALSLGLVVPCPERGKGPSGEADRLVLGEGLCDFRLQAPQASVTAPSEQTTEFGIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 TLDIGALSLGLVVPCPERGKGPSGEADRLVLGEGLCDFRLQAPQASVTAPSEQTTEFGIH 250 260 270 280 290 300 310 320 330 340 350 360 FLJ003 KPHLGKSSSLDKQLPGPSGGEEEKPMGNGSPSPPPGTSLDNPVPSPSPSEIFPVTHSFPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KPHLGKSSSLDKQLPGPSGGEEEKPMGNGSPSPPPGTSLDNPVPSPSPSEIFPVTHSFPS 310 320 330 340 350 360 370 380 390 400 410 420 FLJ003 SAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQAWVSPSETHPVSAQPGAGTGSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SAHSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQAWVSPSETHPVSAQPGAGTGSA 370 380 390 400 410 420 430 440 450 460 FLJ003 KHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMMKVCPLRSWCVR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KHRLHPVKPMNATATKVANCSLGTATIISENLNNEVMMKVCPLRSWCVR 430 440 450 460 >>gi|38260694|gb|AAR15506.1| NOEL1C [Homo sapiens] g (550 aa) initn: 3122 init1: 3122 opt: 3122 Z-score: 3018.2 bits: 568.0 E(): 2.1e-159 Smith-Waterman score: 3122; 100.000% identity (100.000% similar) in 469 aa overlap (1-469:82-550) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|382 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 120 130 140 150 160 170 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 180 190 200 210 220 230 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 240 250 260 270 280 290 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 300 310 320 330 340 350 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 360 370 380 390 400 410 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 420 430 440 450 460 470 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|382 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE 480 490 500 510 520 530 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::::::::::::: gi|382 NLNNEVMMKVCPLRSWCVR 540 550 >>gi|33439251|gb|AAQ18784.1| Rab11-family interacting pr (612 aa) initn: 3037 init1: 3037 opt: 3037 Z-score: 2935.5 bits: 552.9 E(): 8.3e-155 Smith-Waterman score: 3037; 100.000% identity (100.000% similar) in 459 aa overlap (1-459:82-540) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|334 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 120 130 140 150 160 170 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 180 190 200 210 220 230 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 240 250 260 270 280 290 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 300 310 320 330 340 350 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 360 370 380 390 400 410 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 420 430 440 450 460 470 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE 480 490 500 510 520 530 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|334 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 540 550 560 570 580 590 >>gi|28273122|dbj|BAC56924.1| FLJ00294 protein [Homo sap (681 aa) initn: 3037 init1: 3037 opt: 3037 Z-score: 2934.8 bits: 552.9 E(): 9e-155 Smith-Waterman score: 3037; 100.000% identity (100.000% similar) in 459 aa overlap (1-459:151-609) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|282 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 130 140 150 160 170 180 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 190 200 210 220 230 240 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 250 260 270 280 290 300 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 310 320 330 340 350 360 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 370 380 390 400 410 420 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 430 440 450 460 470 480 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 490 500 510 520 530 540 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE 550 560 570 580 590 600 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|282 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 610 620 630 640 650 660 >>gi|50659104|ref|NP_001002814.1| RAB11 family interacti (1283 aa) initn: 3037 init1: 3037 opt: 3037 Z-score: 2930.9 bits: 553.1 E(): 1.5e-154 Smith-Waterman score: 3037; 100.000% identity (100.000% similar) in 459 aa overlap (1-459:753-1211) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|506 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 730 740 750 760 770 780 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 790 800 810 820 830 840 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 850 860 870 880 890 900 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 910 920 930 940 950 960 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 970 980 990 1000 1010 1020 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 1030 1040 1050 1060 1070 1080 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 1090 1100 1110 1120 1130 1140 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|506 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE 1150 1160 1170 1180 1190 1200 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|506 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 1210 1220 1230 1240 1250 1260 >>gi|33439255|gb|AAQ18786.1| Rab11-family interacting pr (1283 aa) initn: 3037 init1: 3037 opt: 3037 Z-score: 2930.9 bits: 553.1 E(): 1.5e-154 Smith-Waterman score: 3037; 100.000% identity (100.000% similar) in 459 aa overlap (1-459:753-1211) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|334 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 730 740 750 760 770 780 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 790 800 810 820 830 840 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 850 860 870 880 890 900 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 910 920 930 940 950 960 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 970 980 990 1000 1010 1020 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 1030 1040 1050 1060 1070 1080 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 1090 1100 1110 1120 1130 1140 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE 1150 1160 1170 1180 1190 1200 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|334 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 1210 1220 1230 1240 1250 1260 >>gi|50363230|ref|NP_001002233.1| RAB11 family interacti (612 aa) initn: 3031 init1: 3031 opt: 3031 Z-score: 2929.7 bits: 551.8 E(): 1.7e-154 Smith-Waterman score: 3031; 99.782% identity (99.782% similar) in 459 aa overlap (1-459:82-540) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|503 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 120 130 140 150 160 170 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 180 190 200 210 220 230 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 240 250 260 270 280 290 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 300 310 320 330 340 350 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 360 370 380 390 400 410 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|503 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 420 430 440 450 460 470 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|503 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNAMATKVANCSLGTATIISE 480 490 500 510 520 530 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|503 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 540 550 560 570 580 590 >>gi|67472130|sp|Q6WKZ4.2|RFIP1_HUMAN RecName: Full=Rab1 (1283 aa) initn: 3031 init1: 3031 opt: 3031 Z-score: 2925.1 bits: 552.0 E(): 3.1e-154 Smith-Waterman score: 3031; 99.782% identity (99.782% similar) in 459 aa overlap (1-459:753-1211) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|674 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 730 740 750 760 770 780 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 790 800 810 820 830 840 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 850 860 870 880 890 900 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 910 920 930 940 950 960 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 970 980 990 1000 1010 1020 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 1030 1040 1050 1060 1070 1080 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 1090 1100 1110 1120 1130 1140 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|674 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNAMATKVANCSLGTATIISE 1150 1160 1170 1180 1190 1200 460 FLJ003 NLNNEVMMKVCPLRSWCVR ::::::::: gi|674 NLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQKETISKKEFQVRELEDYIDNLLVRV 1210 1220 1230 1240 1250 1260 >>gi|33439253|gb|AAQ18785.1| no Rab11-binding protein 1A (504 aa) initn: 2805 init1: 2805 opt: 2805 Z-score: 2712.8 bits: 511.4 E(): 2.1e-142 Smith-Waterman score: 2805; 99.764% identity (100.000% similar) in 423 aa overlap (1-423:82-504) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|334 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 120 130 140 150 160 170 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 180 190 200 210 220 230 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 240 250 260 270 280 290 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|334 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGVLSLGLVVPCPERGKGPSGEADRLV 300 310 320 330 340 350 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS 360 370 380 390 400 410 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 420 430 440 450 460 470 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE ::::::::::::::::::::::::::::::::: gi|334 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHR 480 490 500 460 FLJ003 NLNNEVMMKVCPLRSWCVR >>gi|33439257|gb|AAQ18787.1| no Rab11-binding protein 1B (504 aa) initn: 2802 init1: 2802 opt: 2802 Z-score: 2709.9 bits: 510.9 E(): 3.1e-142 Smith-Waterman score: 2802; 99.764% identity (100.000% similar) in 423 aa overlap (1-423:82-504) 10 20 30 FLJ003 ESQAGSLVESKARDAAEEVAPPLPMGASVP :::::::::::::::::::::::::::::: gi|334 AQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAAEEVAPPLPMGASVP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ003 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVAGAALLVEGHSSCPQELNPAW 120 130 140 150 160 170 100 110 120 130 140 150 FLJ003 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPADHLLLPSQEESFSEVPMSEA 180 190 200 210 220 230 160 170 180 190 200 210 FLJ003 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 SSAKDTPLFRMEGEDALVTQYQSKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSI 240 250 260 270 280 290 220 230 240 250 260 270 FLJ003 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PEVASDDERIDQVEDDGDQVEDDGETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLV 300 310 320 330 340 350 280 290 300 310 320 330 FLJ003 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPHLGKSSSLDKQLPGPSGGEEEKPMGNGS ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|334 LGEGLCDFRLQAPQASVTAPSEQTTEFGIHKPYLGKSSSLDKQLPGPSGGEEEKPMGNGS 360 370 380 390 400 410 340 350 360 370 380 390 FLJ003 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|334 PSPPPGTSLDNPVPSPSPSEIFPVTHSFPSSAHSDTHHTSTAESQKKATAEGSAGRVENF 420 430 440 450 460 470 400 410 420 430 440 450 FLJ003 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHRLHPVKPMNATATKVANCSLGTATIISE ::::::::::::::::::::::::::::::::: gi|334 GKRKPLLQAWVSPSETHPVSAQPGAGTGSAKHR 480 490 500 460 FLJ003 NLNNEVMMKVCPLRSWCVR 469 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 20:35:49 2009 done: Fri Feb 27 20:42:39 2009 Total Scan time: 922.380 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]