# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh02493.fasta.huge -Q ../query/FLJ00135.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00135, 597 aa vs ./tmplib.10216 library 2210397 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.4136+/-0.00346; mu= 23.8923+/- 0.235 mean_var=75.0205+/-16.617, 0's: 0 Z-trim: 4 B-trim: 10 in 1/39 Lambda= 0.148076 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00350 ( 601 res) sg00019 ( 601) 3420 740.1 1.4e-214 FLJ00100 ( 672 res) as00100 ( 672) 104 31.8 0.26 KIAA1535 ( 711 res) fk12792 ( 711) 104 31.9 0.27 FLJ00010 ( 772 res) as00010 ( 772) 104 31.9 0.28 FLJ00317 ( 111 res) sh07047 ( 111) 86 26.7 1.5 KIAA1687 ( 728 res) fh26020 ( 728) 88 28.5 2.9 KIAA1020 ( 638 res) fg00473s1 ( 638) 84 27.5 4.9 KIAA1028 ( 501 res) fh00176s1 ( 501) 83 27.1 5 KIAA1522 ( 1044 res) fh14706(revised) (1044) 84 27.9 6.3 KIAA1388 ( 599 res) fj06552 ( 599) 80 26.6 8.6 KIAA1557 ( 806 res) fh18848 ( 806) 81 27.0 8.6 KIAA0498 ( 111 res) hg00157 ( 111) 74 24.1 8.9 KIAA1887 ( 967 res) fk02232 ( 967) 81 27.2 9.5 KIAA1532 ( 601 res) fg04455(revised) ( 601) 79 26.4 10 FLJ00155 ( 612 res) sh06465 ( 612) 79 26.4 10 KIAA1318 ( 1418 res) fh13683 (1418) 81 27.4 11 KIAA0377 ( 1412 res) hh00412 (1412) 80 27.2 13 KIAA0541 ( 1500 res) fg05763 (1500) 80 27.3 14 FLJ00247 ( 925 res) sj08552 ( 925) 78 26.5 14 KIAA1998 ( 607 res) bf00063 ( 607) 76 25.8 16 KIAA0715 ( 1498 res) pf08610 (1498) 79 27.0 16 FLJ00193 ( 491 res) sj02629 ( 491) 75 25.4 16 KIAA0473 ( 937 res) hh00220 ( 937) 77 26.3 17 KIAA0015 ( 480 res) ha00478 ( 480) 74 25.2 19 KIAA1113 ( 1131 res) hj06379(revised) (1131) 76 26.2 21 FLJ00165 ( 146 res) sh07210 ( 146) 68 23.0 25 KIAA1960 ( 871 res) hk03842 ( 871) 74 25.6 25 KIAA0644 ( 887 res) hj03618 ( 887) 74 25.6 25 KIAA1657 ( 127 res) hg00527 ( 127) 67 22.7 27 KIAA0400 ( 1022 res) hg01091 (1022) 74 25.7 27 KIAA0659 ( 1049 res) fh22726 (1049) 74 25.7 28 KIAA1364 ( 811 res) fj02442 ( 811) 73 25.3 28 FLJ00158 ( 308 res) sh06588 ( 308) 69 23.8 31 KIAA0604 ( 773 res) hg02198b ( 773) 72 25.1 32 FLJ00039 ( 1438 res) as00039 (1438) 74 25.9 32 KIAA1469 ( 662 res) fj01881 ( 662) 71 24.8 34 KIAA0290 ( 906 res) ha06644 ( 906) 72 25.2 34 KIAA1234 ( 727 res) fh08618 ( 727) 71 24.8 36 KIAA2013 ( 730 res) bm04064 ( 730) 71 24.8 36 KIAA1691 ( 558 res) fj00597s1 ( 558) 70 24.4 36 KIAA0796 ( 1876 res) hk06116s1 (1876) 74 26.1 37 KIAA1862 ( 1070 res) aj00563 (1070) 72 25.3 37 KIAA1723 ( 1554 res) pf00881 (1554) 73 25.8 39 FLJ00190 ( 521 res) sj02368 ( 521) 69 24.2 41 KIAA1497 ( 730 res) hg01608 ( 730) 70 24.6 42 KIAA1554 ( 1320 res) fh17222 (1320) 72 25.5 42 KIAA1079 ( 1476 res) hj06972 (1476) 72 25.5 44 FLJ00064 ( 276 res) as00064 ( 276) 66 23.1 46 KIAA1845 ( 705 res) fg05317(revised) ( 705) 69 24.4 47 FLJ00263 ( 764 res) sj01530 ( 764) 69 24.4 49 >>FLJ00350 ( 601 res) sg00019 (601 aa) initn: 3420 init1: 3420 opt: 3420 Z-score: 3945.7 bits: 740.1 E(): 1.4e-214 Smith-Waterman score: 3420; 99.613% identity (99.807% similar) in 517 aa overlap (1-517:1-517) 10 20 30 40 50 60 FLJ001 PFLCQVSRFLHTYSAATQDLQAKELHQLQNLFSKASADYQWLLQSPKGAEATLPTVIAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 PFLCQVSRFLHTYSAATQDLQAKELHQLQNLFSKASADYQWLLQSPKGAEATLPTVIAEL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 QQFLRGARAMCIESWARFSLVRMAGGTALLAASCFICLLASQWAISPGFPFCPLLLTPVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 QQFLRGARAMCIESWARFSLVRMAGGTALLAASCFICLLASQWAISPGFPFCPLLLTPVA 70 80 90 100 110 120 130 140 150 160 170 180 FLJ001 WGLVGAIAYAGLLGTIELKLDLVLLGAVAAVSSFLPFLWKAWAGWGSKRPLATLFPIPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 WGLVGAIAYAGLLGTIELKLDLVLLGAVAAVSSFLPFLWKAWAGWGSKRPLATLFPIPGP 130 140 150 160 170 180 190 200 210 220 230 240 FLJ001 VLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHWEGQLLPPKLLTMPRLGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 VLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHWEGQLLPPKLLTMPRLGTS 190 200 210 220 230 240 250 260 270 280 290 300 FLJ001 ATTNPPRHNGAYALRLGIGLLLCTRLAGLFHRCPEETPVCHSSPWLSPLASMVGGRAKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 ATTNPPRHNGAYALRLGIGLLLCTRLAGLFHRCPEETPVCHSSPWLSPLASMVGGRAKNL 250 260 270 280 290 300 310 320 330 340 350 360 FLJ001 WYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFVRWGLPLMALGTAAYWALASGADEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 WYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFVRWGLPLMALGTAAYWALASGADEA 310 320 330 340 350 360 370 380 390 400 410 420 FLJ001 PPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVTVLVKAGAGAPRTRTVLTPFSGPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 PPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVTVLVKAGAGAPRTRTVLTPFSGPPT 370 380 390 400 410 420 430 440 450 460 470 480 FLJ001 SQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAMVTALTLLAFPLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ003 SQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAMVTALTLLAFPLL 430 440 450 460 470 480 490 500 510 520 530 540 FLJ001 LLHAERISLVFLLLFLQSFLLLHLLAAGIPVTTPGPFTVPWQAVSAWALMATQTFYSTGH ::::::::::::::::::::::::::::::::::: . FLJ003 LLHAERISLVFLLLFLQSFLLLHLLAAGIPVTTPGKYLSSDSLKDNSDVSSAPLVFKEVL 490 500 510 520 530 540 550 560 570 580 590 FLJ001 QPVFPAIHWHAAFVGFPEGHGSCTWLPALLVGANTFASHLLFAGSRLPTAPALAFPV FLJ003 LLMFLSLTEGPMPHTTRKVFLVSSLLPAIAKQIDPSCWFPGFMERRDKESSKTPCGNAAS 550 560 570 580 590 600 >>FLJ00100 ( 672 res) as00100 (672 aa) initn: 140 init1: 66 opt: 104 Z-score: 116.8 bits: 31.8 E(): 0.26 Smith-Waterman score: 104; 31.373% identity (51.961% similar) in 102 aa overlap (79-175:116-212) 50 60 70 80 90 100 FLJ001 AEATLPTVIAELQQFLRGARAMCIESWARFSLVRMAGGTALLAA----SCFICLLASQWA :. . :.. .: : . : .:: . FLJ001 LLQEDYGFFRAISLWPPLVLIGIYATALSASMSSLIGASRILHALARDDLFGVILAPAKV 90 100 110 120 130 140 110 120 130 140 150 160 FLJ001 IS-PGFPFCPLLLTPVAWGLVGAIAYAGLLGTIELKLDLVLLGAVAAVSSFLPFLWKAWA .: : :. .: . :::: . :: :.:. . . : : :::. : : :: FLJ001 VSRGGNPWAAVLYS---WGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVD--LSCLSLEWA 150 160 170 180 190 200 170 180 190 200 210 220 FLJ001 GWGSKRPLATLFPIPGPVLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHWE . . :: .:: FLJ001 SAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLAALLTARGGPSSWG 210 220 230 240 250 260 >>KIAA1535 ( 711 res) fk12792 (711 aa) initn: 78 init1: 49 opt: 104 Z-score: 116.6 bits: 31.9 E(): 0.27 Smith-Waterman score: 104; 25.503% identity (52.349% similar) in 149 aa overlap (193-335:175-310) 170 180 190 200 210 220 FLJ001 AGWGSKRPLATLFPIPGPVLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHW : .. .: : . : : ...::: :: KIAA15 RIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLC---HW 150 160 170 180 190 200 230 240 250 260 270 FLJ001 EG--QLLPPKLLTMPRLGTSATTNPPRHN-G---AYALRLGIGLLLCTRLAGLFHRCPEE .: :.: : : .: . .. :. : ..:: ... .:: . .. KIAA15 DGCLQFLVPMLQDFPPDCWVSINHMVNHSWGRQYSHALFKAMSHMLCIGYG-------QQ 210 220 230 240 250 280 290 300 310 320 330 FLJ001 TPVCHSSPWLSPLASMVGGRAKNLWYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFV .:: . ::. :. .::. .. : .: . .: .. : . ..: :. : : : KIAA15 APVGMPDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKY---KQVEQYMSFH 260 270 280 290 300 310 340 350 360 370 380 390 FLJ001 RWGLPLMALGTAAYWALASGADEAPPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVT KIAA15 KLPADTRQRIHEYYEHRYQGKMFDEESILGELSEPLREEIINFTCRGLVAHMPLFAHADP 320 330 340 350 360 370 >>FLJ00010 ( 772 res) as00010 (772 aa) initn: 104 init1: 66 opt: 104 Z-score: 116.3 bits: 31.9 E(): 0.28 Smith-Waterman score: 104; 31.373% identity (51.961% similar) in 102 aa overlap (79-175:216-312) 50 60 70 80 90 100 FLJ001 AEATLPTVIAELQQFLRGARAMCIESWARFSLVRMAGGTALLAA----SCFICLLASQWA :. . :.. .: : . : .:: . FLJ000 LLQEDYGFFRAISLWPPLVLIGIYATALSASMSSLIGASRILHALARDDLFGVILAPAKV 190 200 210 220 230 240 110 120 130 140 150 160 FLJ001 IS-PGFPFCPLLLTPVAWGLVGAIAYAGLLGTIELKLDLVLLGAVAAVSSFLPFLWKAWA .: : :. .: . :::: . :: :.:. . . : : :::. : : :: FLJ000 VSRGGNPWAAVLYS---WGLVQLVLLAGKLNTLAAVVTVFYLVAYAAVD--LSCLSLEWA 250 260 270 280 290 300 170 180 190 200 210 220 FLJ001 GWGSKRPLATLFPIPGPVLLLLLFRLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHWE . . :: .:: FLJ000 SAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLAALLTARGGPSSWG 310 320 330 340 350 360 >>FLJ00317 ( 111 res) sh07047 (111 aa) initn: 107 init1: 75 opt: 86 Z-score: 103.1 bits: 26.7 E(): 1.5 Smith-Waterman score: 86; 29.032% identity (50.538% similar) in 93 aa overlap (505-594:7-96) 480 490 500 510 520 530 FLJ001 LAFPLLLLHAERISLVFLLLFLQSFLLLHLLAAGIP-VTTPGPFTVPWQAVSAWALMATQ : : : :::: :.:..:. . FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLPT 10 20 30 540 550 560 570 580 590 FLJ001 TFYSTGHQPVFPAIHWHAAFVGFPEGHGSCTWLPALLVGANTFAS--HLLFAGSRLPTAP :. . :: : ::. . . : ::. . . : . :.. .. : . : : : FLJ003 TLTGLGHTPE-PAL--NPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRAPETQPLPP 40 50 60 70 80 90 FLJ001 ALAFPV .:: FLJ003 SLAEAGPPTDPLVVRNAG 100 110 >>KIAA1687 ( 728 res) fh26020 (728 aa) initn: 98 init1: 46 opt: 88 Z-score: 98.0 bits: 28.5 E(): 2.9 Smith-Waterman score: 88; 29.412% identity (54.412% similar) in 68 aa overlap (324-384:510-577) 300 310 320 330 340 FLJ001 GGRAKNLWYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFVRWGL-------PLMALG :.. . ::: : :: :..:.: KIAA16 GVAVIDNKLYVVGGRDGLKTLNTVECFNPVGKIWTVMPPMSTHRHGLGVATLEGPMYAVG 480 490 500 510 520 530 350 360 370 380 390 400 FLJ001 TAAYWALASGADEAPPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVTVLVKAGAGAP :. . ... :. : ::: ::...:..: KIAA16 GHDGWSYLNTVERWDPEGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLKSMEY 540 550 560 570 580 590 410 420 430 440 450 460 FLJ001 RTRTVLTPFSGPPTSQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSA KIAA16 FDPHTNKWSLCAPMSKRRGGVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKGDS 600 610 620 630 640 650 >>KIAA1020 ( 638 res) fg00473s1 (638 aa) initn: 121 init1: 70 opt: 84 Z-score: 93.9 bits: 27.5 E(): 4.9 Smith-Waterman score: 84; 37.288% identity (55.932% similar) in 59 aa overlap (145-201:19-76) 120 130 140 150 160 170 FLJ001 LLTPVAWGLVGAIAYAGLLGTIELKLDLVLLGAVAAVSSFLPFLWKAWAGWGSKRPLATL :.:. ::. : . : :::: :. : : KIAA10 PGIDAPPGRPRAQEAPPPLAAAHMVSGPLALRWCAWAGRGDMGPDMEL 10 20 30 40 180 190 200 210 220 230 FLJ001 FPIPGPVLLLLLF--RLAVFFSDSFVVAEARATPFLLGSFILLLVVQLHWEGQLLPPKLL : . ::: : : :. : ....: KIAA10 -PSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAHKNVLAASSIYFKSLVLHDNLINLD 50 60 70 80 90 100 >>KIAA1028 ( 501 res) fh00176s1 (501 aa) initn: 66 init1: 43 opt: 83 Z-score: 93.7 bits: 27.1 E(): 5 Smith-Waterman score: 83; 24.194% identity (52.419% similar) in 124 aa overlap (354-470:112-229) 330 340 350 360 370 380 FLJ001 GNLKSPEPPMLFVRWGLPLMALGTAAYWALASGADEAPPRL-RVLVSGASMVLPRAVAGL :: :.. : .: : .:.. . . .. : KIAA10 KVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYL 90 100 110 120 130 140 390 400 410 420 430 FLJ001 AASGLALLLWKPVTVLVKAGAGAPRTRTVLTP------FSGPPTSQADLDYVVPQIYRHM :. . ::...:: : : : :. .. :..: :::: :: .. . KIAA10 HANWVLHRDLKPANILV-MGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA 150 160 170 180 190 200 440 450 460 470 480 490 FLJ001 QEEFRGRLERTKSQGPLTVAAYQLGSVYSAAMVTALTLLAFPLLLLHAERISLVFLLLFL : . : . ::. . . .: ... ... KIAA10 PELLLGARHYTKA-----IDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIF 210 220 230 240 250 500 510 520 530 540 550 FLJ001 QSFLLLHLLAAGIPVTTPGPFTVPWQAVSAWALMATQTFYSTGHQPVFPAIHWHAAFVGF KIAA10 SVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLL 260 270 280 290 300 310 >>KIAA1522 ( 1044 res) fh14706(revised) (1044 aa) initn: 72 init1: 43 opt: 84 Z-score: 92.0 bits: 27.9 E(): 6.3 Smith-Waterman score: 84; 26.891% identity (43.697% similar) in 119 aa overlap (324-440:494-608) 300 310 320 330 340 350 FLJ001 GGRAKNLWYGACVAALVALLAAVRLWLRRYGNLKSPEPPMLFVRWGLPLMALGTAAYWAL : .: :: : .: .. : . KIAA15 VPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCPPNPANSW-VPGLSPGGSRRPPR 470 480 490 500 510 520 360 370 380 390 400 410 FLJ001 ASGADEAPPRLRVLVSGASMVLPRAVAGLAASGLALLLWKP--VTVLVKAGAGAPRTRTV . .: ::. . :...:: :: :: :: : . ::.. . : KIAA15 SPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTS 530 540 550 560 570 580 420 430 440 450 460 470 FLJ001 LTPFSGPPTSQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAMVTA : :. : : : ::: . ..: KIAA15 LCSSSSDP---APSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAA 590 600 610 620 630 >>KIAA1388 ( 599 res) fj06552 (599 aa) initn: 69 init1: 69 opt: 80 Z-score: 89.6 bits: 26.6 E(): 8.6 Smith-Waterman score: 80; 26.154% identity (55.385% similar) in 65 aa overlap (380-441:172-236) 350 360 370 380 390 400 FLJ001 YWALASGADEAPPRLRVLVSGASMVLPRAVAGLAASGLALLLWKPVTVLVKAGAGAPRTR .::. .. .::. . : ..:: KIAA13 VQAEQKPFVCGVCKMGFSLLTSLAQHHSSHSGLVKCSICEKTYKPAEAAEPATTAAPSLP 150 160 170 180 190 200 410 420 430 440 450 460 FLJ001 TVLTPFSGPPTSQADLDYVVP---QIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSA .. .: . :. ::: : : . ..:..: : KIAA13 AAPAPSTVTPAEQADKPYSCPICQKPFKHLSELSRHERIHTGEKPYKCTLCDKSFSQSSH 210 220 230 240 250 260 470 480 490 500 510 520 FLJ001 AMVTALTLLAFPLLLLHAERISLVFLLLFLQSFLLLHLLAAGIPVTTPGPFTVPWQAVSA KIAA13 LVHHKRTHSSERPYKCAVCEKTFKHRSHLVRHMYAHSGEHHLFRCNVCELHFKESSELLQ 270 280 290 300 310 320 597 residues in 1 query sequences 2210397 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:40:36 2009 done: Fri Feb 27 10:40:36 2009 Total Scan time: 0.640 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]