# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh02562.fasta.huge -Q ../query/FLJ00287.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00287, 186 aa vs ./tmplib.10216 library 2210808 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 8.4219+/-0.00817; mu= 0.8641+/- 0.549 mean_var=438.6178+/-99.568, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.061239 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1471 ( 1421 res) fj02383s1 (1421) 166 28.0 2.4 KIAA1883 ( 1480 res) fh02249 (1480) 156 27.2 4.5 KIAA0775 ( 639 res) hk05255 ( 639) 147 25.8 5 KIAA0754 ( 1174 res) hh06485 (1174) 150 26.5 5.7 KIAA1856 ( 1134 res) fh03203 (1134) 143 25.8 8.6 KIAA1902 ( 1112 res) hj04383 (1112) 140 25.6 10 KIAA1205 ( 1217 res) fg03511a (1217) 140 25.6 11 KIAA0905 ( 1229 res) hk10341 (1229) 139 25.5 11 KIAA0616 ( 634 res) hg03623 ( 634) 130 24.3 14 KIAA1818 ( 1157 res) hg00622 (1157) 135 25.2 14 KIAA1886 ( 655 res) fk01837 ( 655) 130 24.3 14 KIAA0765 ( 952 res) hk04803s1 ( 952) 133 24.8 15 KIAA0900 ( 503 res) hk09606s1 ( 503) 127 23.9 15 KIAA1029 ( 1015 res) fh00363 (1015) 131 24.7 17 KIAA0910 ( 1315 res) hg02207s1 (1315) 133 25.1 17 KIAA1064 ( 1315 res) hj05008s1 (1315) 132 25.0 18 KIAA1986 ( 334 res) pg00636 ( 334) 119 22.9 20 KIAA0029 ( 974 res) ha00566 ( 974) 128 24.4 20 KIAA0771 ( 948 res) hk05113 ( 948) 127 24.3 21 KIAA1887 ( 967 res) fk02232 ( 967) 127 24.3 21 KIAA1741 ( 1777 res) fh23254 (1777) 131 25.1 23 KIAA1608 ( 872 res) fj20142 ( 872) 125 24.1 23 FLJ00224 ( 896 res) sj06244 ( 896) 125 24.1 23 FLJ00386 ( 811 res) sj04204 ( 811) 124 23.9 23 KIAA0363 ( 1522 res) hh00103 (1522) 129 24.8 24 KIAA1931 ( 514 res) fj14393 ( 514) 119 23.2 25 KIAA1172 ( 929 res) hj03919(revised) ( 929) 123 23.9 26 KIAA0992 ( 772 res) hk07554 ( 772) 121 23.6 27 KIAA1193 ( 544 res) fg00739 ( 544) 118 23.1 27 KIAA1030 ( 763 res) fh00432 ( 763) 120 23.5 29 FLJ00201 ( 705 res) sj04110 ( 705) 119 23.4 29 KIAA1041 ( 642 res) fh02801 ( 642) 118 23.2 29 FLJ00353 ( 1766 res) sh01144 (1766) 126 24.7 30 KIAA0820 ( 892 res) bg00036 ( 892) 120 23.6 31 FLJ00261 ( 1651 res) sh06537 (1651) 125 24.5 31 KIAA1802 ( 821 res) fj21631 ( 821) 119 23.5 31 KIAA0807 ( 1329 res) hk04449(revised) (1329) 123 24.2 32 KIAA0339 ( 1709 res) hg01304(revised) (1709) 125 24.5 32 KIAA0515 ( 670 res) hg00183 ( 670) 117 23.2 32 FLJ00371 ( 625 res) sh06716 ( 625) 116 23.0 33 KIAA0298 ( 901 res) hf00341(revised) ( 901) 119 23.6 33 KIAA0304 ( 2415 res) af07172 (2415) 127 25.0 34 KIAA1375 ( 546 res) fj04426 ( 546) 114 22.8 35 KIAA0819 ( 989 res) hh01037 ( 989) 119 23.6 35 KIAA1357 ( 836 res) fj01906 ( 836) 117 23.3 36 FLJ00163 ( 521 res) sh06933 ( 521) 113 22.6 36 KIAA1681 ( 1236 res) fh23697 (1236) 120 23.9 37 KIAA0583 ( 1952 res) af01829 (1952) 123 24.5 38 KIAA0557 ( 493 res) hh01334 ( 493) 111 22.4 39 KIAA0945 ( 797 res) hj04760 ( 797) 115 23.1 40 >>KIAA1471 ( 1421 res) fj02383s1 (1421 aa) initn: 106 init1: 67 opt: 166 Z-score: 99.7 bits: 28.0 E(): 2.4 Smith-Waterman score: 166; 29.530% identity (46.980% similar) in 149 aa overlap (6-144:984-1122) 10 20 30 FLJ002 AGWQLLPTAR---SPAQHPPESTSVLLNWVIRALG .:. : .: :: : .:.: KIAA14 QPLPTPYTYPAGAKQPIPAQHHFSSGIPTGFPAPRIGPQPQPHPQPHPS-------QAFG 960 970 980 990 1000 40 50 60 70 80 FLJ002 PLVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLPA---SPHPPLQPPAFPDPPIRSPD : : : .. : . :. : .: :. .: :::. .: : ..: KIAA14 PQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPA-QDPL 1010 1020 1030 1040 1050 1060 90 100 110 120 130 140 FLJ002 PAVSSAHSFPAPRLAWSCVLHSPLSL-PLSKLPPLYLTHSPL--RHQSTQAQ-VPAPHLY :: :.: ::.: : ::. : . :. .:: : :. .: .:.::: KIAA14 PAHSGALPFPSPGPPQPP--HPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLV 1070 1080 1090 1100 1110 1120 150 160 170 180 FLJ002 SQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM KIAA14 PSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 1130 1140 1150 1160 1170 1180 >>KIAA1883 ( 1480 res) fh02249 (1480 aa) initn: 169 init1: 113 opt: 156 Z-score: 94.7 bits: 27.2 E(): 4.5 Smith-Waterman score: 156; 33.594% identity (48.438% similar) in 128 aa overlap (1-121:710-828) 10 20 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIR- ::: :. : ::::. : : KIAA18 GPSRRGPLPCPLCSREGACSCLPLERGDAVAGWGGHPALGCP--HPPEDDSSLRAERGSL 680 690 700 710 720 730 30 40 50 60 70 80 FLJ002 ALGPLVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPD : :..::. . . :: . . : :: : .: :: :: : : ::: KIAA18 ADLPMAPPASA---PPEFLDPL---MGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPD 740 750 760 770 780 790 90 100 110 120 130 140 FLJ002 P--AVSSAHS---FPAPRLAWSCV-LHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPH : ::.: : :.:. . : ..:.: : . .: KIAA18 PPSAVASPGSGLSSPGPKPGDSGYETETPFS-PEGAFPGGGAAEEEGVPRPRAPPEPPDP 800 810 820 830 840 850 150 160 170 180 FLJ002 LYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM KIAA18 GAPRPPPDPGPLPLPGPREKPTFVVQVSTEQLLMSLREDVTRNLLGEKGATARETGPRKA 860 870 880 890 900 910 >>KIAA0775 ( 639 res) hk05255 (639 aa) initn: 163 init1: 71 opt: 147 Z-score: 93.8 bits: 25.8 E(): 5 Smith-Waterman score: 147; 33.333% identity (49.425% similar) in 87 aa overlap (57-143:366-449) 30 40 50 60 70 80 FLJ002 VIRALGPLVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIR .: : :. :: :: : : : : KIAA07 SSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRR 340 350 360 370 380 390 90 100 110 120 130 140 FLJ002 SPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYS :: : : .. .: . :: ::. : .:: . :: :.. . . :::. KIAA07 SPVPPCPSPQQRRSPA-SPSC--PSPVPQRRSPVPPSCQSPSPQRRSPVPPSCPAPQPRP 400 410 420 430 440 450 150 160 170 180 FLJ002 QTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM KIAA07 PPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAEGAAYAGASPPWLQAEAATLPK 460 470 480 490 500 510 >>KIAA0754 ( 1174 res) hh06485 (1174 aa) initn: 154 init1: 99 opt: 150 Z-score: 92.8 bits: 26.5 E(): 5.7 Smith-Waterman score: 150; 27.152% identity (50.331% similar) in 151 aa overlap (7-150:815-960) 10 20 30 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVP :.: :. . : : .. . . .: . KIAA07 EPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAA 790 800 810 820 830 840 40 50 60 70 80 90 FLJ002 -PTEGGLWSNQVSWPLWED-----VKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDP :: : .. : :. . .: : ::.:: : : : . :::: : . .:. KIAA07 VPTPEEPTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTP--EEPAFPAPAVPTPEE 850 860 870 880 890 900 100 110 120 130 140 FLJ002 AVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLT-HSPLRHQSTQAQVPAPHLYSQTW ..:.: . :.:. . : . : ... . : . : : :.::.: . : KIAA07 SASAAVAVPTPEESASPAAAVPTPAESASFAAVVATLEEP---TSPAASVPTPAAMVATL 910 920 930 940 950 150 160 170 180 FLJ002 EGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM : KIAA07 EEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAA 960 970 980 990 1000 1010 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 116 init1: 116 opt: 143 Z-score: 89.6 bits: 25.8 E(): 8.6 Smith-Waterman score: 143; 36.047% identity (44.186% similar) in 86 aa overlap (59-144:951-1026) 30 40 50 60 70 80 FLJ002 RALGPLVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSP : : : : ::::: :: .: ::. KIAA18 DRKDPRKKKKGKEAGPGAGLPPPRAPALPSEARAPPPPPPPPPHPPLPPPPLPPPPLPLR 930 940 950 960 970 980 90 100 110 120 130 140 FLJ002 DPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQT : . : :: : : :: : : :.. : :. : : :.: KIAA18 LPPLPPP---PLPRP------HPPPPPPLPPLLPPPQTRT-LPAARTMRQPPPPRLALPR 990 1000 1010 1020 1030 150 160 170 180 FLJ002 WEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM KIAA18 RRRSPPRPPSRPARRGPRPTPQARRRPRPSPRRLLRSPHSLCSPRLRPGPRADPRRERAS 1040 1050 1060 1070 1080 1090 >>KIAA1902 ( 1112 res) hj04383 (1112 aa) initn: 115 init1: 115 opt: 140 Z-score: 88.2 bits: 25.6 E(): 10 Smith-Waterman score: 164; 36.735% identity (40.816% similar) in 98 aa overlap (32-129:543-623) 10 20 30 40 50 60 FLJ002 GWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSNQVSWPLWEDVKTPEPG ::: :: :: . ::: KIAA19 LPVVASGTLSMGSEVVAGNSVGPTMGAASSGPLPPPPP----------PLPPSSDTPETV 520 530 540 550 560 70 80 90 100 110 120 FLJ002 EPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP . : : : :: :: : :: : : : : : : ::. :: . : KIAA19 QNGPVTPPMPPPPPPPPPPPPPPPPPPPPP-------PLPGPASETVPAPPLAPPLPSAP 570 580 590 600 610 130 140 150 160 170 180 FLJ002 PLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLP :: : :: KIAA19 PLPGTSSPTVVFNSGLAAVKIKKPIKTKFRMPVFNWVALKPNQINGTVFNEIDDERILED 620 630 640 650 660 670 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 171 init1: 108 opt: 140 Z-score: 87.9 bits: 25.6 E(): 11 Smith-Waterman score: 155; 30.088% identity (45.133% similar) in 113 aa overlap (36-142:614-716) 10 20 30 40 50 60 FLJ002 LPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSNQVSW----PLWEDVKTPEPG :: :: : . . :: :. : : KIAA12 SALDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPP 590 600 610 620 630 640 70 80 90 100 110 FLJ002 EPGSPLPASPHPPLQP-PAFPDPP-IRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK .: : : :: : ::.:.:: . .: :. .: : : ..: : KIAA12 PAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPP---------PPPAMP-SP 650 660 670 680 690 120 130 140 150 160 170 FLJ002 LPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQG :: . .:: . .:.: KIAA12 PPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEG 700 710 720 730 740 750 >>KIAA0905 ( 1229 res) hk10341 (1229 aa) initn: 66 init1: 66 opt: 139 Z-score: 87.4 bits: 25.5 E(): 11 Smith-Waterman score: 139; 26.554% identity (46.328% similar) in 177 aa overlap (4-169:839-1003) 10 20 30 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGP : : ...: :: . . : : : KIAA09 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENP---PPPGFIMHGNVNPNAAGQ 810 820 830 840 850 860 40 50 60 70 80 FLJ002 LVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLP-----ASPHPPLQPPAFPDPPIRSP : :: : .:: : . . :.: .:..: : .. . : :: : : KIAA09 L--PTSPGHMHTQV--PPYPQ---PQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN 870 880 890 900 910 90 100 110 120 130 140 FLJ002 DPAVSSAHSFPAPRLAWSCVLH---SPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLY : .::: :. . .. . : :: : : ...:: . . ..: . : :. : KIAA09 TPYISSASSYTGQSQLYA-AQHQASSPTSSPATSFPPPPSSGASFQHGGPGAP-PSSSAY 920 930 940 950 960 970 150 160 170 180 FLJ002 SQ---TWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM . : .. : :.:.: : KIAA09 ALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNP 980 990 1000 1010 1020 1030 >>KIAA0616 ( 634 res) hg03623 (634 aa) initn: 99 init1: 99 opt: 130 Z-score: 85.7 bits: 24.3 E(): 14 Smith-Waterman score: 141; 28.571% identity (48.901% similar) in 182 aa overlap (1-161:293-461) 10 20 FLJ002 AGWQLLPTARSPAQHPPESTSVL-LNWVIR :: : . : : :: : ..: : :. : KIAA06 DPEEPTFPALSSSSSTGNLAANLTHLGIGGAG-QGMSTPGSSPQHRPAGVSPLSLSTEAR 270 280 290 300 310 320 30 40 50 60 70 FLJ002 ------ALGPLVPPTEGGLWS-----NQVSWPLWEDVKT----PEPGEPGSPLPASPHPP .:.:: : :.. . .:. . .. .. . :.: : : ::: .:: KIAA06 RQQASPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPQPQPPPPPPPASQQPP 330 340 350 360 370 380 80 90 100 110 120 FLJ002 LQPPAFPDPPIRSPD-----PAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSP :: :. :.: : :..: ... : :: . : ::: : :: ..: KIAA06 PPPP--PQAPVRLPPGGPLLPSASLTRGPQPPPLAVTV----PSSLPQS--PP----ENP 390 400 410 420 130 140 150 160 170 180 FLJ002 LRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM . . . :: : . . . .:.: : KIAA06 GQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHTSTLGSVFGDAYY 430 440 450 460 470 480 KIAA06 EQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLTGSHGSLPDSQQ 490 500 510 520 530 540 >>KIAA1818 ( 1157 res) hg00622 (1157 aa) initn: 187 init1: 91 opt: 135 Z-score: 85.7 bits: 25.2 E(): 14 Smith-Waterman score: 135; 26.050% identity (52.101% similar) in 119 aa overlap (11-123:483-600) 10 20 30 40 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEG .: :. :. .::: . : :: : . KIAA18 THTQLYTSHFDLMKMTAGKRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKPLPPIQVA 460 470 480 490 500 510 50 60 70 80 90 FLJ002 GLWSNQVSWP---LWEDVKTPEPG--EPGSPLPASPHPPLQPPA-FPDPPIRSPDPAVSS .: ..... : .. :. .:. .: : : : :: ::: .:.: . .: .. KIAA18 SLRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGP 520 530 540 550 560 570 100 110 120 130 140 150 FLJ002 AHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDM : :. . .:.. : . : . KIAA18 PAVQPQPQ-PQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNV 580 590 600 610 620 630 186 residues in 1 query sequences 2210808 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:07 2009 done: Fri Feb 27 10:51:07 2009 Total Scan time: 0.360 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]