# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh02562.fasta.nr -Q ../query/FLJ00287.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00287, 186 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7815079 sequences Expectation_n fit: rho(ln(x))= 6.3428+/-0.000203; mu= 3.1826+/- 0.011 mean_var=133.5908+/-25.585, 0's: 27 Z-trim: 39 B-trim: 48 in 1/66 Lambda= 0.110965 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748494|dbj|BAC03384.1| FLJ00287 protein [Homo ( 186) 1363 228.3 5.1e-58 gi|169208152|ref|XP_001718862.1| PREDICTED: simila ( 347) 1353 227.0 2.4e-57 gi|169217537|ref|XP_001720559.1| PREDICTED: simila ( 205) 1346 225.6 3.6e-57 gi|169208142|ref|XP_001718761.1| PREDICTED: hypoth ( 205) 1302 218.6 4.8e-55 gi|169218097|ref|XP_001720059.1| PREDICTED: simila ( 192) 1256 211.2 7.5e-53 >>gi|21748494|dbj|BAC03384.1| FLJ00287 protein [Homo sap (186 aa) initn: 1363 init1: 1363 opt: 1363 Z-score: 1197.8 bits: 228.3 E(): 5.1e-58 Smith-Waterman score: 1363; 100.000% identity (100.000% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSNQVSWPLWEDVKTPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSNQVSWPLWEDVKTPEP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 130 140 150 160 170 180 FLJ002 PAGGCM :::::: gi|217 PAGGCM >>gi|169208152|ref|XP_001718862.1| PREDICTED: similar to (347 aa) initn: 1424 init1: 1353 opt: 1353 Z-score: 1185.7 bits: 227.0 E(): 2.4e-57 Smith-Waterman score: 1353; 98.925% identity (100.000% similar) in 186 aa overlap (1-186:162-347) 10 20 30 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRA :::::::::::::::::::::::::::::: gi|169 WAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWVIRA 140 150 160 170 180 190 40 50 60 70 80 90 FLJ002 LGPLVPPTEGGLWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDP ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|169 LGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDP 200 210 220 230 240 250 100 110 120 130 140 150 FLJ002 AVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 AVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWE 260 270 280 290 300 310 160 170 180 FLJ002 GDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCM :::::::::::::::::::::::::::::::::::. gi|169 GDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCI 320 330 340 >>gi|169217537|ref|XP_001720559.1| PREDICTED: similar to (205 aa) initn: 1407 init1: 1346 opt: 1346 Z-score: 1182.6 bits: 225.6 E(): 3.6e-57 Smith-Waterman score: 1346; 98.387% identity (100.000% similar) in 186 aa overlap (1-186:20-205) 10 20 30 40 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG ::::::::::::::::::::::::::::::::::::::::: gi|169 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG 10 20 30 40 50 60 50 60 70 80 90 100 FLJ002 LWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP :::.::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|169 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAP 70 80 90 100 110 120 110 120 130 140 150 160 FLJ002 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 130 140 150 160 170 180 170 180 FLJ002 RRSGVCRGADRRLWKLQGLPAGGCM ::::::::::::::::::::::::. gi|169 RRSGVCRGADRRLWKLQGLPAGGCI 190 200 >>gi|169208142|ref|XP_001718761.1| PREDICTED: hypothetic (205 aa) initn: 1363 init1: 1302 opt: 1302 Z-score: 1144.5 bits: 218.6 E(): 4.8e-55 Smith-Waterman score: 1302; 96.774% identity (97.849% similar) in 186 aa overlap (1-186:20-205) 10 20 30 40 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG :::::::::::::::: :::::::::::::::::::::::: gi|169 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPSESTSVLLNWVIRALGPLVPPTEGG 10 20 30 40 50 60 50 60 70 80 90 100 FLJ002 LWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 70 80 90 100 110 120 110 120 130 140 150 160 FLJ002 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS ::::::::.::::::::: : ::::::::::::::::::::::::::::::::::::::: gi|169 RLAWSCVLYSPLSLPLSKPPALYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 130 140 150 160 170 180 170 180 FLJ002 RRSGVCRGADRRLWKLQGLPAGGCM ::::::::::::::::::::::: : gi|169 RRSGVCRGADRRLWKLQGLPAGGRM 190 200 >>gi|169218097|ref|XP_001720059.1| PREDICTED: similar to (192 aa) initn: 1256 init1: 1256 opt: 1256 Z-score: 1105.1 bits: 211.2 E(): 7.5e-53 Smith-Waterman score: 1256; 99.422% identity (100.000% similar) in 173 aa overlap (1-173:20-192) 10 20 30 40 FLJ002 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG ::::::::::::::::::::::::::::::::::::::::: gi|169 MRERPSGSAECQRGRTGPKAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGG 10 20 30 40 50 60 50 60 70 80 90 100 FLJ002 LWSNQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 LWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 70 80 90 100 110 120 110 120 130 140 150 160 FLJ002 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 RLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLS 130 140 150 160 170 180 170 180 FLJ002 RRSGVCRGADRRLWKLQGLPAGGCM :::::::::::: gi|169 RRSGVCRGADRR 190 186 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:33:51 2009 done: Fri Feb 27 11:38:22 2009 Total Scan time: 646.830 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]