# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh02878.fasta.huge -Q ../query/FLJ00290.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00290, 150 aa vs ./tmplib.10216 library 2210844 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.0177+/-0.00387; mu= 15.6102+/- 0.262 mean_var=80.1970+/-17.231, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.143217 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1984 ( 339 res) hk01547 ( 339) 84 25.8 2.2 FLJ00228 ( 393 res) sj06463 ( 393) 83 25.6 2.8 KIAA1976 ( 351 res) fg02988 ( 351) 81 25.2 3.4 KIAA1726 ( 624 res) pf01109 ( 624) 82 25.7 4.2 FLJ00225 ( 402 res) sj06250 ( 402) 80 25.0 4.3 KIAA0782 ( 1281 res) hk05405s1 (1281) 83 26.4 5.4 FLJ00237 ( 351 res) sj07406 ( 351) 76 24.1 7 KIAA1666 ( 1003 res) fg02554 (1003) 80 25.6 7.3 KIAA0383 ( 1781 res) hh00708s1 (1781) 82 26.4 7.6 KIAA0062 ( 531 res) ha01020 ( 531) 77 24.6 7.8 KIAA0337 ( 1609 res) hg01226 (1609) 80 25.9 9.5 FLJ00034 ( 1343 res) as00034 (1343) 78 25.4 11 KIAA0659 ( 1049 res) fh22726 (1049) 76 24.8 13 FLJ00376 ( 931 res) sh07947 ( 931) 75 24.5 14 KIAA0857 ( 733 res) hk06227 ( 733) 74 24.2 14 KIAA1394 ( 1003 res) hj07546 (1003) 75 24.6 15 KIAA0938 ( 1257 res) hh04777s1 (1257) 75 24.7 17 KIAA1294 ( 1051 res) fg01155 (1051) 74 24.4 18 FLJ00326 ( 122 res) sj01834 ( 122) 65 21.2 19 KIAA1096 ( 1919 res) pf00402 (1919) 76 25.2 19 FLJ00168 ( 588 res) sh07625 ( 588) 71 23.4 19 FLJ00151 ( 302 res) sh05780 ( 302) 68 22.4 20 KIAA0411 ( 1061 res) hg02120 (1061) 73 24.2 20 KIAA2032 ( 952 res) eh00720 ( 952) 72 23.9 22 KIAA1740 ( 1119 res) pj00674 (1119) 72 24.0 24 FLJ00175 ( 1516 res) sj00758 (1516) 73 24.4 25 KIAA1194 ( 575 res) fg00908 ( 575) 69 23.0 25 KIAA0848 ( 988 res) hk05607 ( 988) 71 23.7 26 KIAA0514 ( 483 res) hf00310 ( 483) 68 22.7 26 KIAA0241 ( 522 res) ha04847 ( 522) 68 22.7 28 KIAA0416 ( 529 res) hh00236 ( 529) 68 22.7 28 FLJ00227 ( 196 res) sj06355 ( 196) 64 21.3 28 KIAA0164 ( 929 res) ha02373 ( 929) 70 23.5 29 KIAA2008 ( 793 res) fj04470 ( 793) 69 23.2 31 KIAA1150 ( 499 res) hg02066 ( 499) 67 22.5 31 KIAA1102 ( 1101 res) bh00035 (1101) 70 23.6 32 KIAA1452 ( 694 res) fh12994 ( 694) 68 22.9 33 KIAA0372 ( 1568 res) hh00270 (1568) 71 24.0 34 KIAA0409 ( 464 res) hg01499 ( 464) 66 22.2 34 KIAA1634 ( 874 res) fh21781(revised) ( 874) 68 23.0 37 KIAA0341 ( 546 res) hg01438 ( 546) 66 22.3 38 KIAA0321 ( 1542 res) hg00426 (1542) 70 23.8 39 KIAA0903 ( 962 res) hk09970 ( 962) 68 23.1 39 FLJ00115 ( 757 res) as00115 ( 757) 67 22.7 39 FLJ00283 ( 500 res) sh02088 ( 500) 65 22.1 41 KIAA1246 ( 832 res) hh00149a ( 832) 67 22.8 42 FLJ00321 ( 245 res) sh07670 ( 245) 62 21.0 42 FLJ00214 ( 322 res) sj05155 ( 322) 63 21.4 43 FLJ00204 ( 573 res) sj04432 ( 573) 65 22.2 45 KIAA0170 ( 2090 res) ha02399 (2090) 70 24.0 46 >>KIAA1984 ( 339 res) hk01547 (339 aa) initn: 40 init1: 40 opt: 84 Z-score: 100.2 bits: 25.8 E(): 2.2 Smith-Waterman score: 84; 42.000% identity (56.000% similar) in 50 aa overlap (4-49:29-73) 10 20 30 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRAL---PP ::. : : :. . . :.::: ::: :: KIAA19 GGALLGPVPWAPVTPASGGQVSHHPTRGLGICEPTSCSRGPLWL-SGQLGDTRALLCIPP 10 20 30 40 50 40 50 60 70 80 90 FLJ002 TSFSLYVDLELGW-SWDPEVRERKGLQEGTQQGSWERGLVCLSIGGAEETFMKASEREAG .: :::: .: : KIAA19 ----YHVASELGWPGWGPAALCSSWKQGSRYWASVGYKRPWGECLEEPAAAGAQRARSSS 60 70 80 90 100 110 >>FLJ00228 ( 393 res) sj06463 (393 aa) initn: 43 init1: 43 opt: 83 Z-score: 98.5 bits: 25.6 E(): 2.8 Smith-Waterman score: 83; 40.000% identity (76.667% similar) in 30 aa overlap (92-121:73-99) 70 80 90 100 110 120 FLJ002 QQGSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDEGKAHRVLFPS :.: :...:...: ::: .::...:: FLJ002 AGEDPTTFAAHSLPSDPRLLATVTNAYLGTRVFHDTLHVSGVYNGAGGD---THRAMLPS 50 60 70 80 90 130 140 150 FLJ002 HRPPLALLCVANPHPEADFRMLRKAALSL FLJ002 PLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSI 100 110 120 130 140 150 >>KIAA1976 ( 351 res) fg02988 (351 aa) initn: 100 init1: 65 opt: 81 Z-score: 96.7 bits: 25.2 E(): 3.4 Smith-Waterman score: 81; 28.125% identity (54.688% similar) in 64 aa overlap (3-65:150-208) 10 20 30 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRALPP :. . : ::.. : .::: KIAA19 VWQVEGDGQSFSINFNITKVDGRGCRTAVTCFHYQLPTSPQNAPALPALPP-----TLPP 120 130 140 150 160 170 40 50 60 70 80 90 FLJ002 TSFSLYVDLELGWSWDPEVRERKG-LQEGTQQGSWERGLVCLSIGGAEETFMKASEREAG . . .. :: :. :..:.:.. .: : .:: KIAA19 ACPQAHLLLETPWQLPPRLRDREAQVQMGLGEGSAGDMGAAGGETLEGFPEEGLCTGPQR 180 190 200 210 220 230 100 110 120 130 140 150 FLJ002 RIFTPGLQLQGLHEGMGGDEGKAHRVLFPSHRPPLALLCVANPHPEADFRMLRKAALSL KIAA19 MSQFGCGIKGKSISGGESWAGGTQAVKRAVCVECQQRLGRVTWRGEGRRGREATEGSSAL 240 250 260 270 280 290 >>KIAA1726 ( 624 res) pf01109 (624 aa) initn: 96 init1: 68 opt: 82 Z-score: 95.3 bits: 25.7 E(): 4.2 Smith-Waterman score: 82; 23.967% identity (52.066% similar) in 121 aa overlap (24-141:342-459) 10 20 30 40 50 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRALPPTSFSLYVDLELGWSWDPEVRE :.: :. : ::: .: ... : . KIAA17 TPMPYEQYPKCDSPVDIGYYSMLNAYSNLSLSGPRS-PERRFSLDTDYRIS-SVASDCSS 320 330 340 350 360 60 70 80 90 100 110 FLJ002 RKGLQEGTQQ---GSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGD . ... :... : .:. : ::. .: .. . ..: ::..:. . KIAA17 EGSMSCGSSDSYVGYNDRSYVSSPDPQLEEN-LKCQHMHPHSRLNPQPFLQNFHDPLTRG 370 380 390 400 410 420 120 130 140 150 FLJ002 EGKAHRVLFPSHRPPLALLCVANPHPEADFRMLRKAALSL .. .:. :.::: : . :: . : KIAA17 QSYSHEEPKFHHKPPLPHLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLVATR 430 440 450 460 470 480 KIAA17 IDSISDSRLYDSSPSRQRKPYSRQEGLGSWERPGYGIDAYGYRQTYSLPDNSTQPCYEQF 490 500 510 520 530 540 >>FLJ00225 ( 402 res) sj06250 (402 aa) initn: 68 init1: 46 opt: 80 Z-score: 95.0 bits: 25.0 E(): 4.3 Smith-Waterman score: 80; 32.099% identity (54.321% similar) in 81 aa overlap (25-96:211-290) 10 20 30 40 50 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRALP----PTSFSLYVDLELGWSWDPE : : :: :... : .: : . :: FLJ002 ELPSSVIHKDDLELKEKDQKKPPTAPREVKGTRRKLPTAFLPSKYHGYEEL-LTAKPDPA 190 200 210 220 230 60 70 80 90 100 FLJ002 VRERKGLQEGTQ--QGSWERGLVCLSIGGAEETFMKA---SEREAGRIFTPGLQLQGLHE : ::.:...: : .. :.: : .:..: .:..: :: : FLJ002 FIEPKGIQKNAQALQQMLKHPLLCHSSKPKLDTLQKPYVHKEKRAQRIPIPPPKKTRAQL 240 250 260 270 280 290 110 120 130 140 150 FLJ002 GMGGDEGKAHRVLFPSHRPPLALLCVANPHPEADFRMLRKAALSL FLJ002 LDDIFIRLRDPRNITEAPLGAVLHQWTERRLVNHKQYLEAKRLLKEFQARYRQLVSGSLR 300 310 320 330 340 350 >>KIAA0782 ( 1281 res) hk05405s1 (1281 aa) initn: 68 init1: 68 opt: 83 Z-score: 93.1 bits: 26.4 E(): 5.4 Smith-Waterman score: 83; 26.316% identity (52.632% similar) in 76 aa overlap (56-128:662-737) 30 40 50 60 70 80 FLJ002 GCRALPPTSFSLYVDLELGWSWDPEVRERKGLQEGTQQGSWERGLVCLSIGGAEETFMKA ::. . : : . .. . : .. KIAA07 IVCLAVPPPDTHGFEHTFEVYTEGERLYLFGLESAEQAHEWVKCIAKAFVPPLAEDLLAR 640 650 660 670 680 690 90 100 110 120 130 140 FLJ002 SEREAGRI-FTPGLQLQGLHEGMGGDEGKAHRVLFPSH--RPPLALLCVANPHPEADFRM . .. ::. . ::.:: .:: . :. :..:: . :: : KIAA07 DFERLGRLPYKAGLSLQRAQEGWFSLSGSELRAVFPEGPCEEPLQLRKLQELSIQGDSEN 700 710 720 730 740 750 150 FLJ002 LRKAALSL KIAA07 QVLVLVERRRTLYIQGERRLDFMGWLGAIQKAAASMGDTLSEQQLGDSDIPVIVYRCVDY 760 770 780 790 800 810 >>FLJ00237 ( 351 res) sj07406 (351 aa) initn: 52 init1: 52 opt: 76 Z-score: 91.1 bits: 24.1 E(): 7 Smith-Waterman score: 76; 34.694% identity (53.061% similar) in 49 aa overlap (8-55:82-127) 10 20 30 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRAL-PPTSFS ::: :. : ..: : ::. ::. FLJ002 APHFNPCHHHHRHPHPQPPTTSLLPTEPPSGPEVSSQGR---EASCEGTLRAVDPPVRHH 60 70 80 90 100 40 50 60 70 80 90 FLJ002 LYVDLELGWSWDPEVRERKGLQEGTQQGSWERGLVCLSIGGAEETFMKASEREAGRIFTP : : .: :: .:. . FLJ002 SYGRHEGAWMKDPAARDDRIYVTNYYYGNSLVEFRNLENFKQGRWSNMYKLPYNWIGTGH 110 120 130 140 150 160 >>KIAA1666 ( 1003 res) fg02554 (1003 aa) initn: 72 init1: 48 opt: 80 Z-score: 90.9 bits: 25.6 E(): 7.3 Smith-Waterman score: 80; 29.245% identity (53.774% similar) in 106 aa overlap (12-112:254-354) 10 20 30 40 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRALPPTSFSLYVDL ::. . .: . :: :: : .: . KIAA16 TAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGC--LPAKSPDLGPS- 230 240 250 260 270 280 50 60 70 80 90 FLJ002 ELGWSWDPEVRERKGLQEGTQQGSWERGLVC--LSIGGAEE--TFMKASEREAGRI-FTP .: . : :. :. .: : :: .::: : . .:. : : . .. :: .. . KIAA16 QLPAGQD-EALEEDSLLSGKAQGVVDRGL-CQMVRVGSKTEVATEILDTKTEACQLGLLQ 290 300 310 320 330 100 110 120 130 140 150 FLJ002 GLQLQGLHEGMGGDEGKAHRVLFPSHRPPLALLCVANPHPEADFRMLRKAALSL .. ::: . . : .: KIAA16 SMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALT 340 350 360 370 380 390 >>KIAA0383 ( 1781 res) hh00708s1 (1781 aa) initn: 82 init1: 82 opt: 82 Z-score: 90.6 bits: 26.4 E(): 7.6 Smith-Waterman score: 82; 30.612% identity (57.143% similar) in 49 aa overlap (91-139:163-211) 70 80 90 100 110 120 FLJ002 TQQGSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDEGKAHRVLFP ::.. : : . . .. : . . :: KIAA03 LRSQSDLTSTTNNPAFQQRLRLGAKRAVNNGRLLKDGPQYRVNYGSLDGKGAPQYPSAFP 140 150 160 170 180 190 130 140 150 FLJ002 SHRPPLALLCVANPHPEADFRMLRKAALSL : ::..:: . .:.:: KIAA03 SSLPPVSLLPHEKDQPRADPIPICSFCLGTKESNREKKPEELLSCADCGSSGHPSCLKFC 200 210 220 230 240 250 >>KIAA0062 ( 531 res) ha01020 (531 aa) initn: 58 init1: 58 opt: 77 Z-score: 90.4 bits: 24.6 E(): 7.8 Smith-Waterman score: 77; 33.333% identity (58.824% similar) in 51 aa overlap (102-150:384-434) 80 90 100 110 120 FLJ002 CLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDE-GKAHRV-LFPSHRPPLALL :::. . : : . : .: . .:.: KIAA00 LQASQSACYWLKGVRYSDIGTLAWMITLSDGLHNFIDGLAIGASFTVSVFQGISTSVAIL 360 370 380 390 400 410 130 140 150 FLJ002 CVANPHPEADFRMLRKAALSL : :: .:: .: .:..:. KIAA00 CEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSHFSANWIFALAGG 420 430 440 450 460 470 150 residues in 1 query sequences 2210844 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:09 2009 done: Fri Feb 27 10:51:09 2009 Total Scan time: 0.330 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]