# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh02878.fasta.nr -Q ../query/FLJ00290.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00290, 150 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827394 sequences Expectation_n fit: rho(ln(x))= 4.7711+/-0.000184; mu= 8.8488+/- 0.010 mean_var=62.7719+/-12.410, 0's: 43 Z-trim: 45 B-trim: 1391 in 1/66 Lambda= 0.161879 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748496|dbj|BAC03385.1| FLJ00290 protein [Homo ( 150) 1053 253.6 8.2e-66 gi|114618655|ref|XP_001174439.1| PREDICTED: simila ( 466) 981 237.1 2.3e-60 >>gi|21748496|dbj|BAC03385.1| FLJ00290 protein [Homo sap (150 aa) initn: 1053 init1: 1053 opt: 1053 Z-score: 1337.7 bits: 253.6 E(): 8.2e-66 Smith-Waterman score: 1053; 100.000% identity (100.000% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRALPPTSFSLYVDLELGWSWDPEVRERKGLQEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SCCLGLHGPESPSEQRMLMDSSQLGGCRALPPTSFSLYVDLELGWSWDPEVRERKGLQEG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 TQQGSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDEGKAHRVLFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 TQQGSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDEGKAHRVLFP 70 80 90 100 110 120 130 140 150 FLJ002 SHRPPLALLCVANPHPEADFRMLRKAALSL :::::::::::::::::::::::::::::: gi|217 SHRPPLALLCVANPHPEADFRMLRKAALSL 130 140 150 >>gi|114618655|ref|XP_001174439.1| PREDICTED: similar to (466 aa) initn: 981 init1: 981 opt: 981 Z-score: 1240.0 bits: 237.1 E(): 2.3e-60 Smith-Waterman score: 981; 94.667% identity (96.667% similar) in 150 aa overlap (1-150:317-466) 10 20 30 FLJ002 SCCLGLHGPESPSEQRMLMDSSQLGGCRAL :: ::::::::::::::::::::::::::: gi|114 GEESPHLQRKSRLQVKWSEPLKDLLRFGSRSCFLGLHGPESPSEQRMLMDSSQLGGCRAL 290 300 310 320 330 340 40 50 60 70 80 90 FLJ002 PPTSFSLYVDLELGWSWDPEVRERKGLQEGTQQGSWERGLVCLSIGGAEETFMKASEREA :: :::::::::::::::::::: :::::::::::::: ::::: ::::::::::::::: gi|114 PPISFSLYVDLELGWSWDPEVREGKGLQEGTQQGSWERELVCLSTGGAEETFMKASEREA 350 360 370 380 390 400 100 110 120 130 140 150 FLJ002 GRIFTPGLQLQGLHEGMGGDEGKAHRVLFPSHRPPLALLCVANPHPEADFRMLRKAALSL :::::::::::::.::::::::::::::.:::::::::::::.::::::::::::::::: gi|114 GRIFTPGLQLQGLREGMGGDEGKAHRVLLPSHRPPLALLCVAQPHPEADFRMLRKAALSL 410 420 430 440 450 460 150 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:48:57 2009 done: Fri Feb 27 11:53:07 2009 Total Scan time: 596.740 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]