# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh02993.fasta.huge -Q ../query/FLJ00291.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00291, 159 aa vs ./tmplib.10216 library 2210835 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.0159+/-0.00455; mu= 11.6121+/- 0.307 mean_var=115.1051+/-24.923, 0's: 0 Z-trim: 1 B-trim: 5 in 1/39 Lambda= 0.119544 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00299 ( 72 res) sh04143 ( 72) 95 25.0 0.84 KIAA1375 ( 546 res) fj04426 ( 546) 96 26.3 2.5 FLJ00214 ( 322 res) sj05155 ( 322) 93 25.5 2.6 FLJ00328 ( 238 res) sj02853 ( 238) 88 24.5 4 KIAA1539 ( 543 res) fg02356 ( 543) 92 25.6 4 KIAA1715 ( 429 res) hh02382 ( 429) 87 24.6 6.4 KIAA0618 ( 1052 res) hg03971 (1052) 91 25.9 6.8 KIAA0346 ( 1682 res) hg01508s1 (1682) 93 26.5 7.1 KIAA0495 ( 209 res) hg00106 ( 209) 81 23.2 8.5 FLJ00201 ( 705 res) sj04110 ( 705) 85 24.6 11 FLJ00361 ( 366 res) sh04352 ( 366) 81 23.5 12 KIAA1482 ( 818 res) fj06205 ( 818) 85 24.7 12 KIAA1733 ( 509 res) ph00321 ( 509) 82 23.9 13 FLJ00207 ( 288 res) sj04935 ( 288) 77 22.7 17 KIAA1887 ( 967 res) fk02232 ( 967) 83 24.4 17 KIAA1991 ( 712 res) bf00209 ( 712) 81 23.9 18 FLJ00052 ( 368 res) as00052 ( 368) 77 22.8 19 KIAA1243 ( 828 res) pf00817 ( 828) 81 24.0 19 KIAA1538 ( 1029 res) fg06773 (1029) 82 24.3 20 KIAA1443 ( 573 res) hj01820b ( 573) 79 23.4 20 KIAA1912 ( 589 res) fj18220 ( 589) 79 23.5 20 FLJ00176 ( 403 res) sj00934 ( 403) 77 22.9 20 KIAA0731 ( 1096 res) hk03714 (1096) 82 24.3 20 KIAA0288 ( 1097 res) ha06116(revised) (1097) 82 24.3 20 KIAA1639 ( 2584 res) af14886 (2584) 86 25.5 21 KIAA0152 ( 315 res) ha03561 ( 315) 75 22.4 22 KIAA1886 ( 655 res) fk01837 ( 655) 78 23.3 24 KIAA1029 ( 1015 res) fh00363 (1015) 80 23.9 25 FLJ00173 ( 1269 res) sj00667 (1269) 81 24.2 25 FLJ00315 ( 925 res) sh06842 ( 925) 79 23.7 26 FLJ00198 ( 677 res) sj03504 ( 677) 77 23.2 28 FLJ00077 ( 278 res) as00077 ( 278) 72 21.8 29 KIAA0269 ( 567 res) ha06751 ( 567) 75 22.7 31 KIAA1608 ( 872 res) fj20142 ( 872) 77 23.3 32 FLJ00224 ( 896 res) sj06244 ( 896) 77 23.3 33 KIAA0693 ( 404 res) hk03927 ( 404) 73 22.2 33 KIAA0179 ( 762 res) ha02738 ( 762) 76 23.1 33 KIAA1391 ( 1194 res) hh12985 (1194) 78 23.7 34 KIAA1661 ( 90 res) hg03945 ( 90) 65 20.0 34 KIAA1125 ( 1205 res) hk07594 (1205) 78 23.7 34 FLJ00400 ( 782 res) sj07486 ( 782) 75 22.9 38 KIAA1441 ( 1258 res) hg02860b (1258) 77 23.5 40 KIAA0915 ( 846 res) hk06275s1 ( 846) 75 23.0 40 KIAA0985 ( 697 res) hj08038 ( 697) 74 22.7 40 KIAA0458 ( 1552 res) ef01252 (1552) 78 23.8 40 KIAA0199 ( 1283 res) ha03150s1 (1283) 77 23.6 40 KIAA0793 ( 1055 res) hk05692 (1055) 76 23.3 40 KIAA0476 ( 1626 res) ah04654 (1626) 78 23.9 41 KIAA0755 ( 1093 res) hk04532 (1093) 76 23.3 41 KIAA1200 ( 1403 res) fg02656 (1403) 77 23.6 42 >>FLJ00299 ( 72 res) sh04143 (72 aa) initn: 79 init1: 79 opt: 95 Z-score: 107.7 bits: 25.0 E(): 0.84 Smith-Waterman score: 95; 33.929% identity (53.571% similar) in 56 aa overlap (53-107:1-53) 30 40 50 60 70 80 FLJ002 AELESGGVLTSPPKPNQNFLLGVAIRGPSAGAAGVEGQGQALLTWQEAAKETEGRAPR-P : :. ::: : . ..:. .. .: FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGA 10 20 30 90 100 110 120 130 140 FLJ002 VQGGNLVPTAPGHTLSLRHPHGPCHPAVERTACLEVTFRALLHREDCELIQFTASGAAGG .. : : ::: : : : . :: : FLJ002 LEPG---PYCPGHLLYLAHSYLPCSPESCLLCPAQAETAVLVHSP 40 50 60 70 >>KIAA1375 ( 546 res) fj04426 (546 aa) initn: 106 init1: 50 opt: 96 Z-score: 99.2 bits: 26.3 E(): 2.5 Smith-Waterman score: 96; 35.294% identity (45.588% similar) in 68 aa overlap (34-101:433-494) 10 20 30 40 50 60 FLJ002 GGPHGSAVSLQLFHGEAKMAELESGGVLTSPPKPNQNFLLGVAIRGPSAGAAGVEGQGQA : .: : : :.::: : . : : : KIAA13 PAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVL--PANRAPSATAPSPVGAGTA 410 420 430 440 450 460 70 80 90 100 110 120 FLJ002 LLTWQEAAKETEGRAPRPVQGGNLVPTAPGHTLSLRHPHGPCHPAVERTACLEVTFRALL : ..: : :: : : :: ::. . : KIAA13 ----APAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYH 470 480 490 500 510 130 140 150 FLJ002 HREDCELIQFTASGAAGGGCDGGDLRPGGGASLHLI KIAA13 QSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ 520 530 540 >>FLJ00214 ( 322 res) sj05155 (322 aa) initn: 35 init1: 35 opt: 93 Z-score: 98.9 bits: 25.5 E(): 2.6 Smith-Waterman score: 93; 31.765% identity (60.000% similar) in 85 aa overlap (26-108:164-242) 10 20 30 40 50 FLJ002 HARGGPHGSAVSLQLFHGEAKMAELESGGVLTSPPKPNQNFLLGVAIRGPSAGAA :::. . . .:.. . ....: :..: FLJ002 PQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPEKAGRRS-SLQSP-ASVA 140 150 160 170 180 190 60 70 80 90 100 110 FLJ002 GVEGQGQALLTWQEAAKETEGR-APRPVQGGNLVPTAPG-HTLSLRHPHGPCHPAVERTA .: : . . : . ::::: ::. :.::: : : . . .: :: .:. FLJ002 PPQGPGTKIQAPQLLGGETEGREAPQ----GELVPEARGLRQEGPEHKPGPSEPSSVQLE 200 210 220 230 240 120 130 140 150 FLJ002 CLEVTFRALLHREDCELIQFTASGAAGGGCDGGDLRPGGGASLHLI FLJ002 EQEGPNQAWTWPRDKQRPESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWP 250 260 270 280 290 300 >>FLJ00328 ( 238 res) sj02853 (238 aa) initn: 70 init1: 46 opt: 88 Z-score: 95.6 bits: 24.5 E(): 4 Smith-Waterman score: 93; 27.184% identity (51.456% similar) in 103 aa overlap (13-106:131-233) 10 20 30 40 FLJ002 HARGGPHGSAVSLQLFHGEAKMA-ELESGGVLTSPPKPNQNF . :: ..: .: ... :: . : : .. FLJ003 LGCLPCAQDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPPCSY 110 120 130 140 150 160 50 60 70 80 90 FLJ002 LLG----VAIRG--PSAGAAGVEGQGQALLTWQEAAKETEGRAPRPVQGGNLVPT--APG : : ....: :. ::. .: . : : . ::.: :.. : FLJ003 LRGPPGGASLQGCSPAQTAAARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCET 170 180 190 200 210 220 100 110 120 130 140 150 FLJ002 HTLSLRHPHGPCHPAVERTACLEVTFRALLHREDCELIQFTASGAAGGGCDGGDLRPGGG ::: .. : . :: FLJ003 HTLPFQAPLARCHGRFLC 230 >>KIAA1539 ( 543 res) fg02356 (543 aa) initn: 74 init1: 52 opt: 92 Z-score: 95.5 bits: 25.6 E(): 4 Smith-Waterman score: 92; 28.571% identity (48.214% similar) in 112 aa overlap (12-114:197-308) 10 20 30 40 FLJ002 HARGGPHGSAVSLQLFHGEAKMAELESGGVLTSPPKPNQNF :: . :.. .: . .:: : .:. KIAA15 SPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN 170 180 190 200 210 220 50 60 70 80 90 FLJ002 LLGVAIRGPSAGAAGVEGQGQALLTWQEA---AKETEGRAPRPVQGGNLVPTAPGHTLSL . :. : : . :: :: ..: :: ::: .:. ::: . . . KIAA15 GHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAK 230 240 250 260 270 280 100 110 120 130 140 150 FLJ002 RHP---H---GPCHPAVERTACLEVTFRALLHREDCELIQFTASGAAGGGCDGGDLRPGG : : :: .:... : : KIAA15 ATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPT 290 300 310 320 330 340 >>KIAA1715 ( 429 res) hh02382 (429 aa) initn: 91 init1: 57 opt: 87 Z-score: 91.9 bits: 24.6 E(): 6.4 Smith-Waterman score: 87; 33.929% identity (46.429% similar) in 56 aa overlap (50-104:153-208) 20 30 40 50 60 70 FLJ002 AKMAELESGGVLTSPPKPNQNFLLGVAIRGPSAGAAGVEGQGQALLTWQEAAKETEGRAP :::::: . :: . : .. KIAA17 EVMEKETYKTAKLILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNLSPTPA 130 140 150 160 170 180 80 90 100 110 120 130 FLJ002 RPVQGGN-LVPTAPGHTLSLRHPHGPCHPAVERTACLEVTFRALLHREDCELIQFTASGA : :: ::..:: . : :: KIAA17 SPNQGPPPQVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPPG 190 200 210 220 230 240 >>KIAA0618 ( 1052 res) hg03971 (1052 aa) initn: 71 init1: 47 opt: 91 Z-score: 91.5 bits: 25.9 E(): 6.8 Smith-Waterman score: 91; 28.788% identity (63.636% similar) in 66 aa overlap (32-95:482-546) 10 20 30 40 50 60 FLJ002 ARGGPHGSAVSLQLFHGEAKMAELESGGVLTSP-PKPNQNFLLGVAIRGPSAGAAGVEGQ ..: : :.:.::.:. .::. :: . .. KIAA06 LIPAPSMVPATDTKAPPTLQAETATKPQATSAPSPAPKQSFLFGTQNTSPSSPAAPAASS 460 470 480 490 500 510 70 80 90 100 110 FLJ002 GQALLTWQ-EAAKETEGRAPRPVQGGNLVPTAPGHTLSLRHPHGPCHPAVERTACLEVTF . .. : ..: ..: : : ... :::. . KIAA06 APPMFKPIFTAPPKSEKEGPTP-PGPSVTATAPSSSSLPTTTSTTAPTFQPVFSSMGPPA 520 530 540 550 560 570 120 130 140 150 FLJ002 RALLHREDCELIQFTASGAAGGGCDGGDLRPGGGASLHLI KIAA06 SVPLPAPFFKQTTTPATAPTTTAPLFTGLASATSAVAPITSASPSTDSASKPAFGFGINS 580 590 600 610 620 630 >>KIAA0346 ( 1682 res) hg01508s1 (1682 aa) initn: 82 init1: 49 opt: 93 Z-score: 91.1 bits: 26.5 E(): 7.1 Smith-Waterman score: 94; 31.522% identity (47.826% similar) in 92 aa overlap (29-118:267-353) 10 20 30 40 50 FLJ002 HARGGPHGSAVSLQLFHGEAKMAELESGGVLTSPPKPNQNFLLGVAIRGPSAGAAGVE :. :::: . : ...: : : : KIAA03 NSEQTGLPPGLPLPPPPLPPPPPPPPPPLPGLATSPPFQLTKPGLWSTLHGD---AWGPE 240 250 260 270 280 290 60 70 80 90 100 110 FLJ002 GQGQALLTWQEAAKETEGRAPRPVQGGNLVPTAPGHTLSLRHPHGPCH--PAVERTACLE .:.: :: . : :. . . : ::: : : :: :..: .:: KIAA03 RKGSAPPERQEQRHSLPHPYPYPAPAYTAHP--PGHRLVPAAPPGPGPRPPGAESHGCLP 300 310 320 330 340 350 120 130 140 150 FLJ002 VTFRALLHREDCELIQFTASGAAGGGCDGGDLRPGGGASLHLI .: KIAA03 ATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTGLR 360 370 380 390 400 410 >>KIAA0495 ( 209 res) hg00106 (209 aa) initn: 81 init1: 81 opt: 81 Z-score: 89.7 bits: 23.2 E(): 8.5 Smith-Waterman score: 81; 50.000% identity (58.333% similar) in 24 aa overlap (84-107:19-42) 60 70 80 90 100 110 FLJ002 AAGVEGQGQALLTWQEAAKETEGRAPRPVQGGNLVPTAPGHTLSLRHPHGPCHPAVERTA ::.: ::.::: : :: : KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGPGHLHPAACPGGPALPVHRPPR 10 20 30 40 120 130 140 150 FLJ002 CLEVTFRALLHREDCELIQFTASGAAGGGCDGGDLRPGGGASLHLI KIAA04 VPGLGSPGPLTGLGHLPGKAPAPPSAPAGRDPLLAREASPGGIVLAPSPKGSAPSEHPPP 50 60 70 80 90 100 >>FLJ00201 ( 705 res) sj04110 (705 aa) initn: 59 init1: 59 opt: 85 Z-score: 87.7 bits: 24.6 E(): 11 Smith-Waterman score: 85; 27.778% identity (49.074% similar) in 108 aa overlap (5-107:426-528) 10 20 30 FLJ002 HARGGPHGSAVSLQLFHGEAKMAELESGGVLTSP ::.: : . . : . : : : FLJ002 GDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLP 400 410 420 430 440 450 40 50 60 70 80 FLJ002 PKPNQNFLLGV-AIRGPSA--GAAGVEG-QGQALLTWQEAAKETEGRAPRP-VQGGNLVP .:. :. ...::.. : :. : .:. : . :::: .: . : . : FLJ002 GQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLP----GPPGEGRAGEPGTAGPTGPP 460 470 480 490 500 510 90 100 110 120 130 140 FLJ002 TAPGHTLSLRHPHGPCHPAVERTACLEVTFRALLHREDCELIQFTASGAAGGGCDGGDLR .:: . .. : :: : FLJ002 GVPG-SPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGE 520 530 540 550 560 570 159 residues in 1 query sequences 2210835 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:10 2009 done: Fri Feb 27 10:51:10 2009 Total Scan time: 0.340 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]