# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh03502.fasta.huge -Q ../query/FLJ00140.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00140, 579 aa vs ./tmplib.10216 library 2210415 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.2930+/-0.00402; mu= 20.3137+/- 0.273 mean_var=85.7869+/-19.342, 0's: 0 Z-trim: 3 B-trim: 108 in 1/39 Lambda= 0.138473 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0485 ( 83 res) hg00837 ( 83) 218 52.1 2.5e-08 KIAA1655 ( 162 res) hg03341 ( 162) 178 44.5 9.3e-06 KIAA1027 ( 2550 res) fh00156s1 (2550) 111 32.7 0.51 KIAA1053 ( 508 res) hh05049 ( 508) 95 28.6 1.8 KIAA1813 ( 673 res) ph00819b ( 673) 94 28.5 2.5 FLJ00283 ( 500 res) sh02088 ( 500) 87 27.0 5.4 FLJ00146 ( 522 res) sh05065 ( 522) 87 27.0 5.6 KIAA1115 ( 895 res) hk05464 ( 895) 89 27.7 5.8 KIAA1541 ( 477 res) hg04104 ( 477) 85 26.5 6.9 FLJ00053 ( 443 res) as00053 ( 443) 84 26.3 7.6 KIAA1185 ( 403 res) hg02311a ( 403) 83 26.0 8.3 KIAA0706 ( 1123 res) pj01355 (1123) 85 27.0 12 KIAA0568 ( 1426 res) hh02280 (1426) 85 27.2 13 KIAA0131 ( 942 res) ha01235 ( 942) 83 26.5 14 KIAA0809 ( 1385 res) hk10195 (1385) 84 27.0 15 FLJ00068 ( 1194 res) as00068 (1194) 83 26.7 16 KIAA0439 ( 995 res) hj00462 ( 995) 82 26.4 16 KIAA0387 ( 1042 res) hj00020s1 (1042) 82 26.4 17 FLJ00116 ( 169 res) as00116 ( 169) 73 23.5 20 KIAA1121 ( 1390 res) hh10147 (1390) 82 26.6 20 KIAA1817 ( 997 res) fj14474 ( 997) 80 26.0 22 KIAA1026 ( 519 res) fh00114 ( 519) 77 25.0 22 KIAA0362 ( 1108 res) hh00083 (1108) 79 25.8 26 KIAA1755 ( 1110 res) fg04230(revised) (1110) 79 25.8 26 KIAA0619 ( 1428 res) hg04117 (1428) 80 26.2 27 KIAA1138 ( 1239 res) hj05928 (1239) 79 25.9 28 KIAA1280 ( 1032 res) hh03711(revised) (1032) 78 25.6 29 KIAA1931 ( 514 res) fj14393 ( 514) 75 24.6 29 KIAA1453 ( 1123 res) fh14729 (1123) 78 25.6 30 KIAA1431 ( 891 res) fj00022 ( 891) 77 25.3 30 FLJ00037 ( 145 res) as00037 ( 145) 69 22.6 31 KIAA1623 ( 1236 res) fj04650 (1236) 78 25.7 32 KIAA0825 ( 553 res) hh03427 ( 553) 74 24.4 35 KIAA0195 ( 1410 res) ha02752 (1410) 78 25.8 35 FLJ00203 ( 1154 res) sj04233s1 (1154) 77 25.5 35 KIAA0895 ( 540 res) hk08826 ( 540) 73 24.2 39 KIAA0079 ( 1102 res) ha03543 (1102) 76 25.2 39 KIAA1137 ( 933 res) hj03907 ( 933) 75 24.9 41 KIAA0130 ( 1006 res) ha01208 (1006) 75 25.0 43 KIAA1527 ( 801 res) fj06850s1 ( 801) 74 24.6 43 KIAA1167 ( 834 res) hj01786(revised) ( 834) 74 24.7 44 FLJ00302 ( 853 res) sh04964 ( 853) 74 24.7 45 KIAA1509 ( 1365 res) fh14721 (1365) 76 25.4 45 KIAA1547 ( 863 res) fh14154 ( 863) 74 24.7 45 KIAA1848 ( 445 res) bm03548 ( 445) 71 23.7 46 KIAA0498 ( 111 res) hg00157 ( 111) 65 21.7 46 KIAA1833 ( 1166 res) fg05835(revised) (1166) 75 25.1 47 KIAA1472 ( 601 res) fj03211 ( 601) 72 24.1 48 KIAA0582 ( 760 res) fh15957 ( 760) 73 24.4 48 KIAA1735 ( 493 res) ph00512 ( 493) 71 23.8 49 >>KIAA0485 ( 83 res) hg00837 (83 aa) initn: 218 init1: 218 opt: 218 Z-score: 243.0 bits: 52.1 E(): 2.5e-08 Smith-Waterman score: 218; 77.500% identity (87.500% similar) in 40 aa overlap (537-576:13-52) 510 520 530 540 550 560 FLJ001 LAQRRFIRGWGLCIFLPFVLSQLEPGCKKTESRSVAQAVVQWCDLGSLRPPPPRFKRSSH ::.::: : :::::::::.:: :::.: : KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDLGSLQPPSPRFRRFSC 10 20 30 40 570 FLJ001 LGLPSSWDYRHPL :.:::::::: KIAA04 LSLPSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK 50 60 70 80 >>KIAA1655 ( 162 res) hg03341 (162 aa) initn: 178 init1: 178 opt: 178 Z-score: 196.7 bits: 44.5 E(): 9.3e-06 Smith-Waterman score: 178; 69.444% identity (80.556% similar) in 36 aa overlap (543-578:84-119) 520 530 540 550 560 570 FLJ001 IRGWGLCIFLPFVLSQLEPGCKKTESRSVAQAVVQWCDLGSLRPPPPRFKRSSHLGLPSS :: :::: ::::.: :: ::. : :. ::: KIAA16 LSAPCSLSLHFLLFSLSPFFFFEIRVLLYRQAGVQWCYLGSLQPLPPGFKQFSCLSYPSS 60 70 80 90 100 110 FLJ001 WDYRHPL ::::.: KIAA16 WDYRRPPPRQANFCIFSTDGVSPCWPRWSLSLDLMIRPPQPPEVLGLQV 120 130 140 150 160 >>KIAA1027 ( 2550 res) fh00156s1 (2550 aa) initn: 127 init1: 64 opt: 111 Z-score: 111.6 bits: 32.7 E(): 0.51 Smith-Waterman score: 126; 22.403% identity (52.597% similar) in 308 aa overlap (132-412:1439-1737) 110 120 130 140 150 160 FLJ001 QPIFCVLRGDGRLEWFSHKEEYENGGHCLGSTALTGYTLLTSQREYLRLLDALCPESL-G : :: :.: ..: :: . . :.: : KIAA10 SKVLGEAMTGISQNAKNGNLPEFGDAISTASKALCGFTEAAAQAAYL--VGVSDPNSQAG 1410 1420 1430 1440 1450 1460 170 180 190 200 210 FLJ001 DHTQEEPDSLLEVPVSFPLFLQ---HP-FRRHLCFSAATREAQHAWRLALQGGIRLQGTV .. :: .. .. .. . : .: . .:::: :.:. :: .. :: .. KIAA10 QQGLVEPTQFARANQAIQMACQSLGEPGCTQAQVLSAATIVAKHT--SALCNSCRLASA- 1470 1480 1490 1500 1510 1520 220 230 240 250 FLJ001 LQRSQAPAA-RAFLDA-----------VRLYRQHQGHFGDDD--------VTLGSDAEVL :. :.: : :... :. . .: : ... . : .. : KIAA10 --RTTNPTAKRQFVQSAKEVANSTANLVKTIKALDGAFTEENRAQCRAATAPLLEAVDNL 1530 1540 1550 1560 1570 1580 260 270 280 290 300 310 FLJ001 TAVLMREQLPALRAQTLPGLRGAGRARAWAWTELLDAVHAAVLAGASAGLCAFQPEKDEL .: .. .. :: : :.: . . . .:... . . .. . .. .: . . KIAA10 SAFASNPEFSSIPAQISPEGRAAMEPIVISAKTMLESAGGLIQTARALAVNPRDPPSWSV 1590 1600 1610 1620 1630 1640 320 330 340 350 360 370 FLJ001 LASLEKTIRPDVDQLLRQ-RARVAGRLRTDIR-GPLESCLRREVDPQLPRVVQTLLRTVE ::. .:. .. .:. . : .. :.:. . . :.:::: . .: : : : KIAA10 LAGHSRTVSDSIKKLITSMRDKAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREG 1650 1660 1670 1680 1690 1700 380 390 400 410 420 430 FLJ001 ASLEAVRTLLAQGMDRLSHRLRQSPSGTRLRREVYSFGEMPWDLALMQTCYREAERSRGR : ::..: . .....:: .. : .. : :. ..: KIAA10 ISQEALHTQMLTAVQEISHLIE--PLANAARAEASQLGHKVSQMAQYFEPLTLAAVGAAS 1710 1720 1730 1740 1750 440 450 460 470 480 490 FLJ001 LGQLAAPFGFLGMQSLVFGAQDLAQQLMADAVATFLQLADQCLTTALNCDQAAQRLERVR KIAA10 KTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDL 1760 1770 1780 1790 1800 1810 >>KIAA1053 ( 508 res) hh05049 (508 aa) initn: 84 init1: 58 opt: 95 Z-score: 101.8 bits: 28.6 E(): 1.8 Smith-Waterman score: 96; 28.462% identity (51.538% similar) in 130 aa overlap (433-544:271-399) 410 420 430 440 450 FLJ001 RLRREVYSFGEMPWDLALMQTCYREAERSRGRLGQLAAPFGFL-GMQSLVFG---AQDLA :.:. : : : :. . :.: .: :. KIAA10 KDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLV 250 260 270 280 290 300 460 470 480 490 500 510 FLJ001 QQLMADAVATFLQLADQCLTTALNCDQAAQRLERVRGRVLKKFKS-------D-SGLAQR .. . ....::: :.:: . .:: . .: : :.: : :: :. KIAA10 SRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQ 310 320 330 340 350 360 520 530 540 550 560 FLJ001 RFIRGWGLCIFLPFV------LSQLEPGCKKTESRSVAQAVVQWCDLGSLRPPPPRFKRS : ::.: :: . ... .: . ::.: .: KIAA10 R-NRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTA 370 380 390 400 410 570 FLJ001 SHLGLPSSWDYRHPL KIAA10 TPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLPVTE 420 430 440 450 460 470 >>KIAA1813 ( 673 res) ph00819b (673 aa) initn: 87 init1: 57 opt: 94 Z-score: 99.4 bits: 28.5 E(): 2.5 Smith-Waterman score: 94; 25.439% identity (50.877% similar) in 114 aa overlap (1-104:26-134) 10 20 FLJ001 QAVVVGK------GRGAPGDDSS--MGGRPSSPLD :: :.:. :: :: . : :. . KIAA18 ASATMAIVQTLPVPLEPAPEAATAPQAPVMGSVSSLISGRPCPGGPAPPRHHGPPGPTFF 10 20 30 40 50 60 30 40 50 60 70 80 FLJ001 KQQRQHLRGQVDTLLRNFLPCY--RGQLAASVLRQISRELGPQEPTGSQLLRSKKLPRVR .:: ::: .. . . : : . .. . :.... . : . :. . .: KIAA18 RQQDGLLRGGYEAQ-EPLCPAVPPRKAVPVTSFTYINEDFRTESPPSP----SSDVEDAR 70 80 90 100 110 90 100 110 120 130 140 FLJ001 EHRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGHCLGSTALTGYTLLTSQR :.:. ..::: ::. :. KIAA18 EQRAHNAHLRGPPPKLIPVSGKLEKNMEKILIRPTAFKPVLPKPRGAPSLPSFMGPRATG 120 130 140 150 160 170 >>FLJ00283 ( 500 res) sh02088 (500 aa) initn: 130 init1: 64 opt: 87 Z-score: 93.2 bits: 27.0 E(): 5.4 Smith-Waterman score: 87; 36.585% identity (51.220% similar) in 41 aa overlap (546-578:142-182) 520 530 540 550 560 FLJ001 WGLCIFLPFVLSQLEPGCKKTESRSVAQAVVQWCDLGSLRPPPPRFK--------RSSHL .: : .:.: :: :: . : .:: FLJ002 GYHEGPALSSGVSECLGESRPGEDGGTGPALQECTVGTLPPPRPRREGRSLPQSGRCTHL 120 130 140 150 160 170 570 FLJ001 GLPSSWDYRHPL : :. :: FLJ002 GTPGRLGAPHPCPPERALPLSLGAWPGPPGGPSVSAPKDIRSVRPISLVRPVLPATLSHG 180 190 200 210 220 230 >>FLJ00146 ( 522 res) sh05065 (522 aa) initn: 92 init1: 47 opt: 87 Z-score: 93.0 bits: 27.0 E(): 5.6 Smith-Waterman score: 87; 38.710% identity (54.839% similar) in 62 aa overlap (42-100:331-384) 20 30 40 50 60 FLJ001 PGDDSSMGGRPSSPLDKQQRQHLRGQVDTLLRNFLPCYRGQLAASVLRQISRELGPQ--E .:..:: : :: ::. : ::::: : FLJ001 SLLEAYVINVTTSQSTKSRYVPNGKLASYTVRDLLPGRRYQL--SVIAVQSTELGPQHSE 310 320 330 340 350 70 80 90 100 110 120 FLJ001 PTGSQLLRSKKLPRVRE-HRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGH :. .. : . :. :.: :: :: FLJ001 PAHLYIITSPRDGADRRWHQG------GHHPRVLKNRPPPARLPELRLLNDHSAPETPTQ 360 370 380 390 400 410 130 140 150 160 170 180 FLJ001 CLGSTALTGYTLLTSQREYLRLLDALCPESLGDHTQEEPDSLLEVPVSFPLFLQHPFRRH FLJ001 PPRFSELVDGRGRVSARFGGSPSKAATVRSHVPGNCSENPCQNGGTCVPGADAHSCDCGP 420 430 440 450 460 470 >>KIAA1115 ( 895 res) hk05464 (895 aa) initn: 178 init1: 59 opt: 89 Z-score: 92.7 bits: 27.7 E(): 5.8 Smith-Waterman score: 93; 25.434% identity (52.023% similar) in 173 aa overlap (311-472:247-403) 290 300 310 320 330 340 FLJ001 RARAWAWTELLDAVHAAVLAGASAGLCAFQPEKDELLASLEKTIRPDVDQLLRQRARVAG :: :.:::.::: . ..::: . . KIAA11 KDENQHSNASQSLCDIIRLSREQMIQVQDSPEPDQLLATLEK--QETIEQLLSNMFEGEQ 220 230 240 250 260 270 350 360 370 380 390 400 FLJ001 RLRTDIRGPLESCLRREVDPQLPRVVQTLLRTVEASLEAVRTLLAQGMDRLSHRLRQSPS . . : . : ..:. :: .. . . .:... ::::: : . . . KIAA11 SQSVIVSGI--QVLLTLLEPRRPRSESVTVNSFFSSVDGQLELLAQGA--LESTVSSVGA 280 290 300 310 320 330 410 420 430 440 450 FLJ001 GTRLRREVYSFGEM---PWDLALMQTCYREAERSRGRLGQLAAPFG-----FLGMQSLVF :: .. : .. : : .: . :.:: :.: . . . .. KIAA11 LHALRPRLSCFHQLLLEPPKLEPLQMTW----------GMLAPPLGNTRLHVVKLLASAL 340 350 360 370 380 460 470 480 490 500 FLJ001 GAQD--LAQQLMA-DAVATFLQLADQCLTTALNCDQAAQRLERVRGRVLKKFKSDSGLAQ .:.: :...:.: :. :.:.: KIAA11 SANDAALTHELLALDVPNTMLDLFFHYVFNNFLHAQVEGCVSTMLSLGPPPDSSPETPIQ 390 400 410 420 430 440 >>KIAA1541 ( 477 res) hg04104 (477 aa) initn: 85 init1: 85 opt: 85 Z-score: 91.3 bits: 26.5 E(): 6.9 Smith-Waterman score: 85; 71.429% identity (92.857% similar) in 14 aa overlap (564-577:1-14) 540 550 560 570 FLJ001 KKTESRSVAQAVVQWCDLGSLRPPPPRFKRSSHLGLPSSWDYRHPL :::::::. :.:.: KIAA15 SSHLGLPKCWEYKHEPWHVAATCLFSLRVY 10 20 30 KIAA15 NWRSYRELGFLLSHTRAHLTPGHCPLKSDIISTVEFNYSGDLLATGDKGGRVVIFQREQE 40 50 60 70 80 90 >>FLJ00053 ( 443 res) as00053 (443 aa) initn: 127 init1: 61 opt: 84 Z-score: 90.5 bits: 26.3 E(): 7.6 Smith-Waterman score: 84; 36.585% identity (51.220% similar) in 41 aa overlap (546-578:142-182) 520 530 540 550 560 FLJ001 WGLCIFLPFVLSQLEPGCKKTESRSVAQAVVQWCDLGSLRPPPPRFK--------RSSHL .: : .:.: :: :: . : .:: FLJ000 GYHEGPALSSGVSECLGESRPGEDGGTGPALQECIVGTLPPPRPRREGRSLPQSGRCTHL 120 130 140 150 160 170 570 FLJ001 GLPSSWDYRHPL : :. :: FLJ000 GTPGRLGAPHPCPPERALPLSLGAWPGPPGGPSVSAPKDIRSVRPISLVRPVLPATLSHG 180 190 200 210 220 230 579 residues in 1 query sequences 2210415 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:40:41 2009 done: Fri Feb 27 10:40:41 2009 Total Scan time: 0.620 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]