# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh03586.fasta.nr -Q ../query/FLJ00292.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00292, 194 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827194 sequences Expectation_n fit: rho(ln(x))= 4.9030+/-0.000181; mu= 8.8960+/- 0.010 mean_var=63.6047+/-12.538, 0's: 46 Z-trim: 47 B-trim: 2733 in 1/65 Lambda= 0.160816 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo ( 194) 1311 312.1 3.2e-83 gi|114602074|ref|XP_527016.2| PREDICTED: similar t ( 482) 1271 303.1 4.1e-80 gi|109078832|ref|XP_001105096.1| PREDICTED: hypoth ( 282) 1186 283.3 2.3e-74 gi|119582619|gb|EAW62215.1| hCG1980385, isoform CR ( 777) 1127 269.9 6.8e-70 gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full ( 161) 1088 260.3 1e-67 gi|194219911|ref|XP_001917929.1| PREDICTED: simila ( 204) 925 222.6 3e-56 gi|73971332|ref|XP_538636.2| PREDICTED: hypothetic ( 196) 847 204.5 8.2e-51 gi|194668930|ref|XP_602849.4| PREDICTED: similar t ( 197) 832 201.0 9.2e-50 gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus ( 166) 815 197.0 1.2e-48 gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full= ( 147) 810 195.8 2.5e-48 gi|116283249|gb|AAH05528.1| Tifab protein [Mus mus ( 147) 809 195.6 3e-48 gi|81882601|sp|Q5BK67.1|TIFAB_RAT RecName: Full=TR ( 147) 802 194.0 9.1e-48 gi|126290140|ref|XP_001370035.1| PREDICTED: simila ( 165) 611 149.7 2.2e-34 gi|45356820|gb|AAS58449.1| TRAF2 binding protein [ ( 193) 215 57.9 1.1e-06 gi|42718028|gb|AAQ74975.2| TRAF2-binding protein [ ( 193) 215 57.9 1.1e-06 gi|81883742|sp|Q5XIB9.1|TIFA_RAT RecName: Full=TRA ( 185) 196 53.4 2.3e-05 gi|33086586|gb|AAP92605.1| Ab2-389 [Rattus norvegi ( 421) 196 53.7 4.4e-05 gi|74751795|sp|Q96CG3.1|TIFA_HUMAN RecName: Full=T ( 184) 189 51.8 7.1e-05 gi|149698279|ref|XP_001503516.1| PREDICTED: simila ( 185) 189 51.8 7.1e-05 gi|74002374|ref|XP_545028.2| PREDICTED: similar to ( 208) 189 51.8 7.8e-05 gi|126331162|ref|XP_001365175.1| PREDICTED: simila ( 179) 188 51.6 8.1e-05 gi|55623106|ref|XP_526660.1| PREDICTED: TRAF-inter ( 184) 188 51.6 8.3e-05 gi|123797702|sp|Q793I8.1|TIFA_MOUSE RecName: Full= ( 184) 184 50.6 0.00016 gi|190360160|sp|A2VDM0.1|TIFA_BOVIN RecName: Full= ( 185) 184 50.7 0.00016 gi|74147494|dbj|BAE38653.1| unnamed protein produc ( 184) 183 50.4 0.00019 gi|50746767|ref|XP_420645.1| PREDICTED: similar to ( 187) 178 49.3 0.00042 gi|109075389|ref|XP_001092116.1| PREDICTED: simila ( 185) 175 48.6 0.00068 gi|85857152|dbj|BAE78590.1| TRAF6 binding protein ( 178) 160 45.1 0.0073 >>gi|34526521|dbj|BAC85138.1| FLJ00292 protein [Homo sap (194 aa) initn: 1311 init1: 1311 opt: 1311 Z-score: 1650.3 bits: 312.1 E(): 3.2e-83 Smith-Waterman score: 1311; 100.000% identity (100.000% similar) in 194 aa overlap (1-194:1-194) 10 20 30 40 50 60 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPP 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 RLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 RLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVN 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 GLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 GLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDE 130 140 150 160 170 180 190 FLJ002 WEGISQGQPPPGSG :::::::::::::: gi|345 WEGISQGQPPPGSG 190 >>gi|114602074|ref|XP_527016.2| PREDICTED: similar to FL (482 aa) initn: 1271 init1: 1271 opt: 1271 Z-score: 1594.5 bits: 303.1 E(): 4.1e-80 Smith-Waterman score: 1271; 98.446% identity (98.964% similar) in 193 aa overlap (2-194:290-482) 10 20 30 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRT ::::::::::::::::::::::::: :::: gi|114 FQTHMTGPKYDPEGVCGTAIKLSGPWRSIRALPALPKPAYSLSRAHSCRTRARCALAIRT 260 270 280 290 300 310 40 50 60 70 80 90 FLJ002 SSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHL :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|114 SSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHL 320 330 340 350 360 370 100 110 120 130 140 150 FLJ002 SLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SLEPYLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEE 380 390 400 410 420 430 160 170 180 190 FLJ002 GTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG ::::::::::::::::::::::::::::::::::: ::::::: gi|114 GTSLEAFVCYFHVSPSPLIYRPEAEETDEWEGISQEQPPPGSG 440 450 460 470 480 >>gi|109078832|ref|XP_001105096.1| PREDICTED: hypothetic (282 aa) initn: 1186 init1: 1186 opt: 1186 Z-score: 1491.3 bits: 283.3 E(): 2.3e-74 Smith-Waterman score: 1186; 92.593% identity (96.296% similar) in 189 aa overlap (6-194:51-239) 10 20 30 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSME :::::::: ::::::::.::: ::: :::: gi|109 EWPFTALSILPVPRPCPLLRPSGKCHVAYTLPKPAYSLPRAHSCRTRVRCALAIRPSSME 30 40 50 60 70 80 40 50 60 70 80 90 FLJ002 KPLTVLRVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEP ::::.:.::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 KPLTILQVSLYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPHLSRRHLSLEP 90 100 110 120 130 140 100 110 120 130 140 150 FLJ002 YLEKGSALLAFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSL :::::::.::::::.:::::::::::::::::::: :: :::. :::::::::::::::: gi|109 YLEKGSAMLAFCLKVLSRKGCVWVNGLTLRYLEQVTLSPVNRLFFSGIQMLVRVEEGTSL 150 160 170 180 190 200 160 170 180 190 FLJ002 EAFVCYFHVSPSPLIYRPEAEETDEWEGISQGQPPPGSG ::::::::::::::::::::::::::::::: ::::::: gi|109 EAFVCYFHVSPSPLIYRPEAEETDEWEGISQEQPPPGSGQQTSGCLGFLHGPSQTWDSPP 210 220 230 240 250 260 gi|109 QPRPGGGTEIQLQREPPDSTLC 270 280 >>gi|119582619|gb|EAW62215.1| hCG1980385, isoform CRA_a (777 aa) initn: 1110 init1: 1110 opt: 1127 Z-score: 1411.0 bits: 269.9 E(): 6.8e-70 Smith-Waterman score: 1127; 92.778% identity (96.667% similar) in 180 aa overlap (15-194:294-473) 10 20 30 40 FLJ002 GALPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVS ..: :.. .. . ::::::::::::::: gi|119 LGQREEENAFYIMVVAMWKRHISLNIRFRMKTHVCKAYVKHVMHERTSSMEKPLTVLRVS 270 280 290 300 310 320 50 60 70 80 90 100 FLJ002 LYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYHPTLGPSAFANVPPRLQHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALL 330 340 350 360 370 380 110 120 130 140 150 160 FLJ002 AFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AFCLKALSRKGCVWVNGLTLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHV 390 400 410 420 430 440 170 180 190 FLJ002 SPSPLIYRPEAEETDEWEGISQGQPPPGSG :::::::::::::::::::::::::::::: gi|119 SPSPLIYRPEAEETDEWEGISQGQPPPGSGCQQFLFSAQKDDRFAPRASYKEVQLHSQAL 450 460 470 480 490 500 >>gi|172046187|sp|Q6ZNK6.2|TIFAB_HUMAN RecName: Full=TRA (161 aa) initn: 1088 init1: 1088 opt: 1088 Z-score: 1371.8 bits: 260.3 E(): 1e-67 Smith-Waterman score: 1088; 100.000% identity (100.000% similar) in 161 aa overlap (34-194:1-161) 10 20 30 40 50 60 FLJ002 PALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQ :::::::::::::::::::::::::::::: gi|172 MEKPLTVLRVSLYHPTLGPSAFANVPPRLQ 10 20 30 70 80 90 100 110 120 FLJ002 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT 40 50 60 70 80 90 130 140 150 160 170 180 FLJ002 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG 100 110 120 130 140 150 190 FLJ002 ISQGQPPPGSG ::::::::::: gi|172 ISQGQPPPGSG 160 >>gi|194219911|ref|XP_001917929.1| PREDICTED: similar to (204 aa) initn: 925 init1: 925 opt: 925 Z-score: 1166.0 bits: 222.6 E(): 3e-56 Smith-Waterman score: 925; 83.230% identity (95.031% similar) in 161 aa overlap (34-194:1-161) 10 20 30 40 50 60 FLJ002 PALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQ ::.:::::::::.::: ::.::.::: .:: gi|194 MERPLTVLRVSLHHPTQGPAAFTNVPLQLQ 10 20 30 70 80 90 100 110 120 FLJ002 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT :::::::.:::.:::.::.:: ::::::::::: :::::::.::::::::.::::::::: gi|194 HDTSPLLVGRGRDAHIQLRLPNLSRRHLSLEPYREKGSALLVFCLKALSRRGCVWVNGLT 40 50 60 70 80 90 130 140 150 160 170 180 FLJ002 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG ::.::::::::::::.:.::::.:.:: ::::::::: ::.:::::::::.::::::::. gi|194 LRFLEQVPLSTVNRVTFAGIQMVVHVEGGTSLEAFVCCFHLSPSPLIYRPQAEETDEWES 100 110 120 130 140 150 190 FLJ002 ISQGQPPPGSG : : ::::::: gi|194 IPQEQPPPGSGERALGHLGFLHGPSQIQDDPPQPSPGGGTEIQFQREPPDSLLC 160 170 180 190 200 >>gi|73971332|ref|XP_538636.2| PREDICTED: hypothetical p (196 aa) initn: 847 init1: 847 opt: 847 Z-score: 1068.4 bits: 204.5 E(): 8.2e-51 Smith-Waterman score: 847; 79.747% identity (92.405% similar) in 158 aa overlap (34-191:1-158) 10 20 30 40 50 60 FLJ002 PALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQ ::. ::::.:::.::: .:::.:: .:: gi|739 MERALTVLHVSLHHPTRDLDAFAKVPAQLQ 10 20 30 70 80 90 100 110 120 FLJ002 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT :::::::.::: ::::.: ::.::::::::::: :.:::::.:::::::::::::::::: gi|739 HDTSPLLVGRGPDAHLRLLLPHLSRRHLSLEPYREEGSALLTFCLKALSRKGCVWVNGLT 40 50 60 70 80 90 130 140 150 160 170 180 FLJ002 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG ::.:::::::.::::.::::::.:::: :::::::.: ::.::::::.::.::::::::. gi|739 LRFLEQVPLSVVNRVAFSGIQMVVRVEGGTSLEAFACCFHLSPSPLIHRPQAEETDEWES 100 110 120 130 140 150 190 FLJ002 ISQGQPPPGSG :: :::: gi|739 TSQEQPPPRPRLQAPEHPGLHRPSLASPEGGTETQLQKEPSDRVPC 160 170 180 190 >>gi|194668930|ref|XP_602849.4| PREDICTED: similar to TI (197 aa) initn: 832 init1: 832 opt: 832 Z-score: 1049.6 bits: 201.0 E(): 9.2e-50 Smith-Waterman score: 832; 77.019% identity (91.304% similar) in 161 aa overlap (34-194:1-161) 10 20 30 40 50 60 FLJ002 PALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQ ::.:::::::::.::: : ..:: :::.:. gi|194 MERPLTVLRVSLHHPTPGSATFAYVPPQLE 10 20 30 70 80 90 100 110 120 FLJ002 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT ::.::::.::: ::::.::::::::.:::::::::::.. ::: :::::::: ::::::: gi|194 HDASPLLVGRGPDAHLRLQLPRLSRQHLSLEPYLEKGGTRLAFSLKALSRKGSVWVNGLT 40 50 60 70 80 90 130 140 150 160 170 180 FLJ002 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG ::.:::: :..::::.:::.::.::.: ::::::::: ::.:::::::: .:::::: :. gi|194 LRFLEQVTLGAVNRVAFSGVQMVVRIEGGTSLEAFVCCFHLSPSPLIYRLRAEETDERES 100 110 120 130 140 150 190 FLJ002 ISQGQPPPGSG . : ::::::: gi|194 VPQEQPPPGSGHGAPDHLGFLHSPLQPSPGGVPEIPLQREPLDGSLS 160 170 180 190 >>gi|60359824|dbj|BAD90131.1| mFLJ00292 protein [Mus mus (166 aa) initn: 815 init1: 815 opt: 815 Z-score: 1029.3 bits: 197.0 E(): 1.2e-48 Smith-Waterman score: 815; 80.405% identity (94.595% similar) in 148 aa overlap (33-180:19-166) 10 20 30 40 50 60 FLJ002 LPALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRL :::.:::::.::::::: :: :::.:: .: gi|603 RPGLRKLQKCVFVMFFPGSMERPLTVLQVSLYHPTQGPVAFAHVPQQL 10 20 30 40 70 80 90 100 110 120 FLJ002 QHDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGL :::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.::::::: gi|603 QHDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGL 50 60 70 80 90 100 130 140 150 160 170 180 FLJ002 TLRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWE :::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.:::: gi|603 PLRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE 110 120 130 140 150 160 190 FLJ002 GISQGQPPPGSG >>gi|81878254|sp|Q8JZM6.1|TIFAB_MOUSE RecName: Full=TRAF (147 aa) initn: 810 init1: 810 opt: 810 Z-score: 1023.8 bits: 195.8 E(): 2.5e-48 Smith-Waterman score: 810; 80.272% identity (94.558% similar) in 147 aa overlap (34-180:1-147) 10 20 30 40 50 60 FLJ002 PALPKPAYSLSRAHSCRTRARCAPAIRTSSMEKPLTVLRVSLYHPTLGPSAFANVPPRLQ ::.:::::.::::::: :: :::.:: .:: gi|818 MERPLTVLQVSLYHPTQGPVAFAHVPQQLQ 10 20 30 70 80 90 100 110 120 FLJ002 HDTSPLLLGRGQDAHLQLQLPRLSRRHLSLEPYLEKGSALLAFCLKALSRKGCVWVNGLT ::.: ::.::::..:::::::.::: ::::::::::::.:::::::.:.::.::::::: gi|818 HDASRLLVGRGQNTHLQLQLPQLSRYHLSLEPYLEKGSSLLAFCLKVLTRKSCVWVNGLP 40 50 60 70 80 90 130 140 150 160 170 180 FLJ002 LRYLEQVPLSTVNRVSFSGIQMLVRVEEGTSLEAFVCYFHVSPSPLIYRPEAEETDEWEG :::::::::.:.::.:::::::::: : :.:::.::::::.:::::::::.:.:::: gi|818 LRYLEQVPLGTINRISFSGIQMLVRKEGGASLETFVCYFHLSPSPLIYRPKAQETDE 100 110 120 130 140 190 FLJ002 ISQGQPPPGSG 194 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:57:30 2009 done: Fri Feb 27 12:02:06 2009 Total Scan time: 655.680 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]