# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04004.fasta.huge -Q ../query/FLJ00297.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00297, 141 aa vs ./tmplib.10216 library 2210853 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.3144+/-0.00438; mu= 22.1115+/- 0.295 mean_var=99.2447+/-21.930, 0's: 0 Z-trim: 1 B-trim: 142 in 2/38 Lambda= 0.128742 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0749 ( 678 res) hk04328 ( 678) 102 28.2 0.76 KIAA1509 ( 1365 res) fh14721 (1365) 101 28.6 1.2 FLJ00315 ( 925 res) sh06842 ( 925) 95 27.2 2.1 KIAA1673 ( 712 res) fg00690 ( 712) 86 25.3 6.1 KIAA0654 ( 1267 res) fh18335 (1267) 87 25.9 6.8 KIAA1619 ( 869 res) fj14720 ( 869) 85 25.3 7.5 KIAA1648 ( 112 res) fg05002 ( 112) 78 22.3 7.7 KIAA1462 ( 1363 res) ef00562 (1363) 86 25.8 8 FLJ00406 ( 261 res) sj08464 ( 261) 79 23.1 9.8 FLJ00193 ( 491 res) sj02629 ( 491) 81 24.0 9.9 KIAA1748 ( 758 res) pj02084 ( 758) 82 24.6 10 KIAA0476 ( 1626 res) ah04654 (1626) 84 25.6 11 KIAA0807 ( 1329 res) hk04449(revised) (1329) 83 25.2 12 KIAA1643 ( 993 res) hh10131(revised) ( 993) 82 24.8 12 KIAA1447 ( 1721 res) fh04686 (1721) 83 25.4 13 KIAA1491 ( 757 res) fj08187 ( 757) 80 24.2 14 KIAA1458 ( 612 res) fh16694 ( 612) 79 23.8 14 KIAA1726 ( 624 res) pf01109 ( 624) 79 23.9 14 FLJ00253 ( 349 res) sj09455 ( 349) 77 23.0 14 KIAA0467 ( 2687 res) ff08895 (2687) 83 25.8 16 KIAA1727 ( 1130 res) pg00153 (1130) 80 24.5 16 KIAA0855 ( 632 res) hk06219 ( 632) 78 23.7 16 KIAA0937 ( 653 res) hh04715 ( 653) 78 23.7 16 KIAA1662 ( 1653 res) fj03879s1 (1653) 81 25.0 17 KIAA1629 ( 1329 res) fh20517 (1329) 80 24.7 17 KIAA0940 ( 699 res) hh04894 ( 699) 77 23.6 19 KIAA1742 ( 1301 res) pj01304s1 (1301) 79 24.5 19 FLJ00085 ( 292 res) as00085 ( 292) 74 22.3 20 KIAA0341 ( 546 res) hg01438 ( 546) 76 23.2 20 KIAA0369 ( 794 res) hh00177 ( 794) 77 23.7 20 KIAA1860 ( 689 res) fh18358 ( 689) 76 23.4 22 KIAA0516 ( 1382 res) hg00484s2 (1382) 78 24.3 23 KIAA1300 ( 1820 res) fg06819 (1820) 78 24.6 25 KIAA2012 ( 555 res) ah04096 ( 555) 74 22.8 26 KIAA1688 ( 1094 res) fh26207 (1094) 76 23.8 26 KIAA0375 ( 1540 res) hh00360s1 (1540) 77 24.2 27 KIAA0007 ( 686 res) ha02056 ( 686) 74 23.0 28 KIAA1087 ( 952 res) hk02378 ( 952) 75 23.5 28 FLJ00146 ( 522 res) sh05065 ( 522) 73 22.6 28 KIAA1602 ( 1003 res) fj10252 (1003) 75 23.5 29 KIAA1745 ( 893 res) pj01678 ( 893) 74 23.2 31 KIAA1159 ( 221 res) hj00357 ( 221) 69 21.1 33 FLJ00084 ( 641 res) as00084 ( 641) 72 22.6 35 FLJ00277 ( 357 res) sh01540 ( 357) 70 21.7 35 KIAA1866 ( 1783 res) pf09734 (1783) 75 24.0 37 FLJ00093 ( 977 res) as00093 ( 977) 73 23.1 37 KIAA2006 ( 1367 res) ff02026 (1367) 74 23.6 37 KIAA0038 ( 230 res) ha01502 ( 230) 68 21.0 38 KIAA1285 ( 785 res) hh11563(revised) ( 785) 72 22.8 38 KIAA0875 ( 621 res) hk07350 ( 621) 71 22.4 39 >>KIAA0749 ( 678 res) hk04328 (678 aa) initn: 72 init1: 46 opt: 102 Z-score: 108.5 bits: 28.2 E(): 0.76 Smith-Waterman score: 115; 30.496% identity (51.064% similar) in 141 aa overlap (7-140:437-554) 10 20 30 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKP ::. . .: : :: :..: ::: :: KIAA07 PRSSQGLSRGEGVFVIDATCVVIRSQYVPTPRT---QQVQLLPSGVTRVVGD-SPSQSKP 410 420 430 440 450 460 40 50 60 70 80 90 FLJ002 LRENG----TYPDAEQQVCVPGRQAHHGGVGPGHPRIRHGVIEESRGQIFHVGRDGQFSL .:.: ..:. :. .: :. : : : :..: :: :. .: KIAA07 GKEEGEGATVFPSPCQKRLSSSRLLHQPGGGRGG---------EAEG-----GRPGDSTL 470 480 490 500 100 110 120 130 140 FLJ002 GDTQ---MGVGSPELGPGRAPAPVRVMSCQHSVALCCASGDALHQGRASASC . .:. .::.. ::.. : .:.. ::: :::: .: KIAA07 EERTFRILGLPAPEVN--LRDAPTQPGSPEHQALGPAASGA---QGRAEGSEVAVVQRRA 510 520 530 540 550 560 KIAA07 GRGWARTPGPYAGALREAVSRIRRHTAPDSDTDEAEELSVHSGSSDGSDTEAPGASWRNE 570 580 590 600 610 620 >>KIAA1509 ( 1365 res) fh14721 (1365 aa) initn: 99 init1: 62 opt: 101 Z-score: 105.2 bits: 28.6 E(): 1.2 Smith-Waterman score: 105; 31.250% identity (53.571% similar) in 112 aa overlap (30-136:781-878) 10 20 30 40 50 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTYPD--AEQQVCVPGRQA ::. .::: .. :: : . :. :.: KIAA15 LIKPKKEGSRERLKSTVDSPPWQLESSDPASPAASQPLRSQAENPDTPALGSNCAEERDA 760 770 780 790 800 810 60 70 80 90 100 110 FLJ002 HHGGVGPGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPELGPGRAPAPVRVMS :.:.:: : : : .. .::. : : :: :. .: .:. :. . . KIAA15 HNGSVGKG-P----GDLKPKRGSP-HRG-----SLDRTD---ASTDLAMRSWPSELGSRT 820 830 840 850 120 130 140 FLJ002 CQHSVALCCASGD---ALHQGRASASC :. :.. :.. : : :: KIAA15 CSTSATTTAPSNSTPIARHPGRTKGYNSDDNLCEPSLEFEVPNHRQYVSRPSSLESSRNT 860 870 880 890 900 910 >>FLJ00315 ( 925 res) sh06842 (925 aa) initn: 88 init1: 56 opt: 95 Z-score: 100.4 bits: 27.2 E(): 2.1 Smith-Waterman score: 95; 27.778% identity (55.556% similar) in 90 aa overlap (27-112:222-306) 10 20 30 40 50 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTYPDAEQQVCVPGRQ :. .:: .:: : : . . . : FLJ003 AGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAGMTPLYAGQRL 200 210 220 230 240 250 60 70 80 90 100 110 FLJ002 AHHGGVGP--GHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPELGP--GRAPAP .:: :: ..: :.:: ... .... :: : :.. .. ...: :. ::: FLJ003 PQHGYPGPPQAQPLPRQGV-KRTYSEVY----PGQQYLQGGQYAPSTAQFAPSPGQPPAP 260 270 280 290 300 120 130 140 FLJ002 VRVMSCQHSVALCCASGDALHQGRASASC FLJ003 SPSYPGHRLPLQQGMTQSLSVPGPTGLHYKPTEQFNGQGASFNGGSVSYSQPGLSGPTRS 310 320 330 340 350 360 >>KIAA1673 ( 712 res) fg00690 (712 aa) initn: 81 init1: 49 opt: 86 Z-score: 92.3 bits: 25.3 E(): 6.1 Smith-Waterman score: 91; 27.143% identity (49.286% similar) in 140 aa overlap (4-136:568-690) 10 20 FLJ002 SDRGQAPRSL----LAMLLQALGCGVCRALGTR : .:: : :::... : ::: : KIAA16 PVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDT 540 550 560 570 580 590 30 40 50 60 70 80 FLJ002 SPSLRKPLRENGTYPDAEQQVCVPGRQAHHGGVGPGHPRIRHGVIEESRGQIFHVGRDGQ .: :. :: . .: ..:.. .... ...:: :.. : .. : : KIAA16 DPELK--------YPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDK-RVEVKPYVLDDQ 600 610 620 630 640 90 100 110 120 130 140 FLJ002 FSLGDTQMGVGSPELGPGRAPAPVRVMSC-QHSVALCCASGDALHQ--GRASASC : : .:. . : :: ..: :. : : :.:. :: KIAA16 --LCDECQGA---RCGGKFAPFFCANVTCLQYYCEYCWA---AIHSRAGREFHKPLVKEG 650 660 670 680 690 700 KIAA16 GDRPRHISFRWN 710 >>KIAA0654 ( 1267 res) fh18335 (1267 aa) initn: 51 init1: 51 opt: 87 Z-score: 91.4 bits: 25.9 E(): 6.8 Smith-Waterman score: 87; 40.909% identity (65.909% similar) in 44 aa overlap (28-67:1198-1241) 10 20 30 40 50 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLREN---GTYPDAEQQVCVPG .:::: :: .::. :. ::. ... KIAA06 QARQLLEKEFSNLISLGTDRRLDEDSAKSFSRSPSWRKMFREKDLRGVTPDSAEMLPPNF 1170 1180 1190 1200 1210 1220 60 70 80 90 100 110 FLJ002 RQAHHGGVG-PGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPELGPGRAPAPV :.: :..: :: : KIAA06 RSAAAGALGSPGLPLRKLQPEGQTSGSSRADGVSVRTYSC 1230 1240 1250 1260 >>KIAA1619 ( 869 res) fj14720 (869 aa) initn: 77 init1: 52 opt: 85 Z-score: 90.6 bits: 25.3 E(): 7.5 Smith-Waterman score: 85; 25.253% identity (57.576% similar) in 99 aa overlap (7-101:24-114) 10 20 30 40 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTY ::.. . : : .. : .. .::::.: :: KIAA16 ASHSPPPQPVTLAPFGGLVSLGLPRKMWGRLWPLL-LSILTATAVPGPSLRRPSREL--- 10 20 30 40 50 50 60 70 80 90 FLJ002 PDAEQQVCVPGRQA----HHGGVGPGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGV :: .. .: .. : : . .. . ..::. .... .: . :::. ...: KIAA16 -DATPRMTIPYEELSGTRHFKGQAQNYSTL---LLEEASARLLVGARGALFSLSANDIGD 60 70 80 90 100 110 100 110 120 130 140 FLJ002 GSPELGPGRAPAPVRVMSCQHSVALCCASGDALHQGRASASC :. KIAA16 GAHKEIHWEASPEMQSKCHQKGKNNQTECFNHVRFLQRLNSTHLYACGTHAFQPLCAAID 120 130 140 150 160 170 >>KIAA1648 ( 112 res) fg05002 (112 aa) initn: 83 init1: 57 opt: 78 Z-score: 90.4 bits: 22.3 E(): 7.7 Smith-Waterman score: 78; 24.176% identity (49.451% similar) in 91 aa overlap (26-112:5-95) 10 20 30 40 50 60 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTYPDAEQQVCVPGRQAHHG ..: : ::.: .:. ..... .::: . KIAA16 GGIGVNTGMPELRHPRQEEVCTHTSQEETSLPGRTDDQP 10 20 30 70 80 90 100 110 FLJ002 GVG---PGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPEL-GPGRAPAPVRVM .. : :: ..: : . . . : : .. . : ::::. : KIAA16 WLSLRSGGPPRHTAHWVKEYPGGVRSMTHLPGTSTWGCQAATPAAVLTGPGRGTDPPLEN 40 50 60 70 80 90 120 130 140 FLJ002 SCQHSVALCCASGDALHQGRASASC KIAA16 DTSNIRMCQLDLC 100 110 >>KIAA1462 ( 1363 res) ef00562 (1363 aa) initn: 45 init1: 45 opt: 86 Z-score: 90.1 bits: 25.8 E(): 8 Smith-Waterman score: 86; 31.624% identity (46.154% similar) in 117 aa overlap (23-123:878-989) 10 20 30 40 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRA--LGTR--SPSLRKPLRENGTYPDAEQ :: .: : :: .: . : :. KIAA14 EEEESSSSSSSSSSSSEESEAEPQQENRAHCRQEDVGFRGNSPEMRVEPQPRMWVP--ES 850 860 870 880 890 900 50 60 70 80 90 FLJ002 QVCVPGRQAHHGG-----VGPGHPRI---RHGV--IEESRGQIFHVGRDGQFSL--GDTQ :: :: .. . ::::: : .::. : : . ::. : : . KIAA14 PVCRSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPF-CSADGSTSAEKGHLE 910 920 930 940 950 960 100 110 120 130 140 FLJ002 MGVGSPELGPGRAPAPVRVMSCQHSVALCCASGDALHQGRASASC .. : ::. .: :: :: . : : KIAA14 VSNGMDELAG--SPFPVTRMSSRSSDAKPLPASYPAEPREPQESPKITSAFSSVKPSEAV 970 980 990 1000 1010 1020 >>FLJ00406 ( 261 res) sj08464 (261 aa) initn: 74 init1: 45 opt: 79 Z-score: 88.6 bits: 23.1 E(): 9.8 Smith-Waterman score: 79; 31.068% identity (49.515% similar) in 103 aa overlap (44-136:164-261) 20 30 40 50 60 70 FLJ002 LLQALGCGVCRALGTRSPSLRKPLRENGTYPDAEQQVCVPGRQAHH---GGVGPGHPRIR : :: :. : . :::: . FLJ004 VHRPQDPWHIPGVPEPVHRPQDPWPWLQLVPPAELAYCLLMLLLAHCMKQQARPGHPDFL 140 150 160 170 180 190 80 90 100 110 120 FLJ002 HGVIEESRGQIFHVGRDGQFSLGDTQMGVGSP----ELGPGRAPAPVRVMSC-QHSV-AL : .:. . . .: : : : ... : : ::::: . . . : .::: .: FLJ004 H---REAWACLSAAG--GLASPGLLLWATARPRASGEAGPGRALVGADAACCPRHSVLSL 200 210 220 230 240 130 140 FLJ002 C-CASGDALHQGRASASC ::..: ::. FLJ004 VDIPSGQVLPQGQ 250 260 >>FLJ00193 ( 491 res) sj02629 (491 aa) initn: 92 init1: 42 opt: 81 Z-score: 88.5 bits: 24.0 E(): 9.9 Smith-Waterman score: 81; 28.829% identity (45.045% similar) in 111 aa overlap (21-125:89-188) 10 20 30 40 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRAL-GTRSPSLRKPLRENGTYPDAEQQ :.: : : .:. .: : . . : FLJ001 SCQRSCQPGRYGKRCVPCKCANHSFCHPSNGTCYCLAGWTGPDCSQPC-PPGHWGENCAQ 60 70 80 90 100 110 50 60 70 80 90 100 FLJ002 VCVPGRQAHHGGVGPGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSP-ELGPGR .: : ::::. ::. : : : .: :: . ..: . :::. FLJ001 TC----QCHHGGTC--HPQ--DGSCICPLGWTGHHCLEG-CPLGTFGANCSQPCQCGPGE 120 130 140 150 160 110 120 130 140 FLJ002 APAPVRVMSC----QHSVALCCASGDALHQGRASASC : .. .: :: : : FLJ001 KCHP-ETGACVCPPGHSGAPCRIGIQEPFTVMPTTPVAYNSLGAVIGIAVLGSLVVALVA 170 180 190 200 210 220 141 residues in 1 query sequences 2210853 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:15 2009 done: Fri Feb 27 10:51:15 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]