# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh04004.fasta.nr -Q ../query/FLJ00297.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00297, 141 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827160 sequences Expectation_n fit: rho(ln(x))= 4.9231+/-0.000186; mu= 8.3601+/- 0.010 mean_var=71.2544+/-13.843, 0's: 44 Z-trim: 44 B-trim: 263 in 2/64 Lambda= 0.151939 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748502|dbj|BAC03388.1| FLJ00297 protein [Homo ( 141) 1000 227.1 6.5e-58 >>gi|21748502|dbj|BAC03388.1| FLJ00297 protein [Homo sap (141 aa) initn: 1000 init1: 1000 opt: 1000 Z-score: 1195.9 bits: 227.1 E(): 6.5e-58 Smith-Waterman score: 1000; 100.000% identity (100.000% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 FLJ002 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTYPDAEQQVCVPGRQAHHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SDRGQAPRSLLAMLLQALGCGVCRALGTRSPSLRKPLRENGTYPDAEQQVCVPGRQAHHG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 GVGPGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPELGPGRAPAPVRVMSCQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GVGPGHPRIRHGVIEESRGQIFHVGRDGQFSLGDTQMGVGSPELGPGRAPAPVRVMSCQH 70 80 90 100 110 120 130 140 FLJ002 SVALCCASGDALHQGRASASC ::::::::::::::::::::: gi|217 SVALCCASGDALHQGRASASC 130 140 141 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 12:34:32 2009 done: Fri Feb 27 12:38:33 2009 Total Scan time: 574.700 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]