# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04107.fasta.huge -Q ../query/FLJ00142.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00142, 674 aa vs ./tmplib.10216 library 2210320 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3475+/-0.00395; mu= 18.8462+/- 0.268 mean_var=84.7138+/-18.573, 0's: 0 Z-trim: 2 B-trim: 21 in 1/39 Lambda= 0.139347 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00129 ( 668 res) sh01893 ( 668) 4512 917.2 0 KIAA0634 ( 1321 res) hj03064 (1321) 111 32.8 0.28 FLJ00296 ( 187 res) sh03944 ( 187) 92 27.9 1.2 KIAA1068 ( 354 res) hj05437 ( 354) 83 26.5 6.3 KIAA1386 ( 1214 res) fj06274 (1214) 88 28.2 6.7 KIAA0980 ( 1406 res) hj07083 (1406) 87 28.1 8.4 KIAA0091 ( 1058 res) ha01032 (1058) 84 27.3 11 KIAA1878 ( 453 res) pj01649 ( 453) 80 26.0 11 FLJ00377 ( 190 res) sh08074 ( 190) 76 24.7 12 KIAA0701 ( 1354 res) hg01611s1 (1354) 84 27.4 12 KIAA1439 ( 561 res) hg01641b ( 561) 80 26.1 13 KIAA0935 ( 952 res) af13188 ( 952) 82 26.8 13 KIAA1787 ( 1564 res) fh19054 (1564) 84 27.5 14 FLJ00375 ( 708 res) sh07824 ( 708) 80 26.3 15 FLJ00183 ( 227 res) sj01602 ( 227) 75 24.6 15 KIAA0584 ( 738 res) hj00933 ( 738) 80 26.3 15 FLJ00115 ( 757 res) as00115 ( 757) 79 26.1 18 FLJ00091 ( 170 res) as00091 ( 170) 72 23.8 19 KIAA1061 ( 693 res) hj00491 ( 693) 78 25.8 19 KIAA1218 ( 864 res) fh03016 ( 864) 78 26.0 22 KIAA0249 ( 902 res) ha07006 ( 902) 78 26.0 22 KIAA1004 ( 1163 res) hj01244 (1163) 79 26.3 23 KIAA1108 ( 763 res) hh03387s1 ( 763) 77 25.7 23 KIAA2032 ( 952 res) eh00720 ( 952) 77 25.8 26 KIAA1730 ( 787 res) pg01135 ( 787) 76 25.5 27 KIAA0401 ( 344 res) hg01095 ( 344) 72 24.2 29 KIAA1883 ( 1480 res) fh02249 (1480) 78 26.3 30 KIAA1944 ( 657 res) fh11215 ( 657) 74 25.0 32 KIAA0482 ( 1332 res) hj01880 (1332) 77 26.0 32 KIAA0236 ( 1696 res) ha04654 (1696) 78 26.4 33 FLJ00319 ( 456 res) sh07415 ( 456) 72 24.4 34 KIAA1355 ( 1189 res) fj01564 (1189) 76 25.7 35 KIAA1964 ( 757 res) ph00746 ( 757) 74 25.1 35 KIAA1030 ( 763 res) fh00432 ( 763) 74 25.1 35 KIAA0130 ( 1006 res) ha01208 (1006) 75 25.5 36 KIAA0495 ( 209 res) hg00106 ( 209) 68 23.1 37 KIAA1170 ( 838 res) hg04224(revised) ( 838) 74 25.1 37 KIAA1822 ( 533 res) fh13781 ( 533) 72 24.5 37 KIAA0469 ( 559 res) hg01666 ( 559) 72 24.5 38 FLJ00150 ( 1793 res) sh05613 (1793) 77 26.2 39 FLJ00204 ( 573 res) sj04432 ( 573) 72 24.5 39 KIAA1762 ( 1460 res) fh27937(revised) (1460) 76 25.9 39 KIAA1747 ( 791 res) pj02023 ( 791) 73 24.9 41 KIAA1927 ( 1325 res) hj03131 (1325) 75 25.6 43 FLJ00101 ( 294 res) as00101 ( 294) 68 23.3 45 KIAA1882 ( 1176 res) aj00515 (1176) 74 25.3 45 KIAA0851 ( 607 res) hk06032 ( 607) 71 24.4 46 KIAA1799 ( 610 res) fj20761 ( 610) 71 24.4 46 KIAA0114 ( 79 res) ha00680 ( 79) 62 21.4 47 KIAA1931 ( 514 res) fj14393 ( 514) 70 24.1 48 >>FLJ00129 ( 668 res) sh01893 (668 aa) initn: 4512 init1: 4512 opt: 4512 Z-score: 4901.0 bits: 917.2 E(): 0 Smith-Waterman score: 4512; 100.000% identity (100.000% similar) in 657 aa overlap (18-674:12-668) 10 20 30 40 50 60 FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGAGAGPHWASSPLGTGSGSIDPDELRTVLQ ::::::::::::::::::::::::::::::::::::::::::: FLJ001 LKFLFQVYDIDVCARQGASAGTEWGAGAGPHWASSPLGTGSGSIDPDELRTVLQ 10 20 30 40 50 70 80 90 100 110 120 FLJ001 SCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 SCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHW 60 70 80 90 100 110 130 140 150 160 170 180 FLJ001 LTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMVAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 LTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMVAK 120 130 140 150 160 170 190 200 210 220 230 240 FLJ001 GCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVVVGLSLVHTVA 180 190 200 210 220 230 250 260 270 280 290 300 FLJ001 HTVNFVLQAQAEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLFMFICSSSCIRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 HTVNFVLQAQAEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLFMFICSSSCIRR 240 250 260 270 280 290 310 320 330 340 350 360 FLJ001 SGHFEVFYWTHLSYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAAVCIMEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 SGHFEVFYWTHLSYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAAVCIMEV 300 310 320 330 340 350 370 380 390 400 410 420 FLJ001 NLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 NLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQ 360 370 380 390 400 410 430 440 450 460 470 480 FLJ001 GQWTNRLYESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GQWTNRLYESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPY 420 430 440 450 460 470 490 500 510 520 530 540 FLJ001 GTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 GTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKL 480 490 500 510 520 530 550 560 570 580 590 600 FLJ001 HKVDFIWINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 HKVDFIWINRDQRSFEWFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALGKNDMKAIGLQ 540 550 560 570 580 590 610 620 630 640 650 660 FLJ001 MALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALAKVLKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: FLJ001 MALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALAKVLKG 600 610 620 630 640 650 670 FLJ001 HCEKFGFRFFQENF :::::::::::::: FLJ001 HCEKFGFRFFQENF 660 >>KIAA0634 ( 1321 res) hj03064 (1321 aa) initn: 68 init1: 68 opt: 111 Z-score: 116.2 bits: 32.8 E(): 0.28 Smith-Waterman score: 111; 29.221% identity (59.740% similar) in 154 aa overlap (20-170:119-264) 10 20 30 40 FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGAGAGPHWASSPLGTGS-G :: ::.::: ::::. :.:: . :: : KIAA06 SREPDSPCRLKTVTVSTLPALRESDIGWSGARAGAGAGT--GAGAAAA-AASPGSPGSAG 90 100 110 120 130 140 50 60 70 80 90 100 FLJ001 SIDPDELRTVLQSCLRESAISLPDEKLDQLTLALFESADADGNGA-ITFEELRDELQRFP . ..: ... : . :.. :. ::. : .: . . .:..: :.. . :.. . KIAA06 TAAESRLLLFVRNEL-PGRIAVQDD-LDNTELPFF-TLEMSGTAADISLVHWRQQWLENG 150 160 170 180 190 200 110 120 130 140 150 160 FLJ001 GVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHN-HRSQLFCLATYAGLHVLLFGLAA .. ....:.. : : : : ..: .... : : : . : . : .:.: .: KIAA06 TLYFHVSMSSSGQL-AQATAPTLQEPSEIVEEQMHILHISVMGGLIALL-LLLLVFTVAL 210 220 230 240 250 260 170 180 190 200 210 220 FLJ001 SAHRDLGASVMVAKGCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLM :.: KIAA06 YAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRSSRLQTHNSVIGVPIRET 270 280 290 300 310 320 >>FLJ00296 ( 187 res) sh03944 (187 aa) initn: 72 init1: 72 opt: 92 Z-score: 104.8 bits: 27.9 E(): 1.2 Smith-Waterman score: 92; 28.829% identity (51.351% similar) in 111 aa overlap (3-108:71-175) 10 20 30 FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGA ..: .. :.: . : : .:. :: FLJ002 SEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGS-WGQ 50 60 70 80 90 40 50 60 70 80 FLJ001 GAGPHWASSPLGTGSGSI---DPDELRTVLQSCLRESAISLPDEKLDQLTLA--LFESAD : :: :: ::. .: . :: .: ..: .. :: .: ..: : : . FLJ002 GPGPSIAS--LGS-DGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLA 100 110 120 130 140 150 90 100 110 120 130 140 FLJ001 ADGNGAITFEELRDELQRFPGVMENLTISAAHWLTAPAPRPRPRRPRQLTRAYWHNHRSQ .:.. : : : . .:: FLJ002 ISGTAEQDFVLLSDLF--LPGDCWVLRKEPPAP 160 170 180 >>KIAA1068 ( 354 res) hj05437 (354 aa) initn: 55 init1: 55 opt: 83 Z-score: 92.0 bits: 26.5 E(): 6.3 Smith-Waterman score: 83; 23.684% identity (56.579% similar) in 76 aa overlap (343-413:206-281) 320 330 340 350 360 FLJ001 SYLLVWLLLIFHGPNFWKWLLVPGILFFLEKAIGLAVSRMAA-VCIMEVN----LLPSKV : ...:.: . : ..: : :. .:. KIAA10 NGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKL 180 190 200 210 220 230 370 380 390 400 410 420 FLJ001 THLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRL :: . . .. .:: . .:. ...: :. . . : . : : KIAA10 THKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDKINKERSMATVDEEEQ 240 250 260 270 280 290 430 440 450 460 470 480 FLJ001 YESFKASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRI KIAA10 AVLDRLTFDYHQKLQGKPQSHELKVHEMLKKGWDAEGSPFRGQRFDPAMFNISPGAVQF 300 310 320 330 340 350 >>KIAA1386 ( 1214 res) fj06274 (1214 aa) initn: 134 init1: 54 opt: 88 Z-score: 91.6 bits: 28.2 E(): 6.7 Smith-Waterman score: 88; 23.810% identity (51.020% similar) in 147 aa overlap (510-652:648-790) 480 490 500 510 520 530 FLJ001 YGTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHT-CPSCQHSWIEGVQDNM .: . ... .: : .:.... .. KIAA13 PEELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEW 620 630 640 650 660 670 540 550 560 570 580 590 FLJ001 KLHKVDFIWINRDQRSFE--WFVSLLTKLEMDQAEEAQYGRFLELHMYMTSALG-KNDMK : :. . : : .: : .: :: : .. :: :: .: :: . KIAA13 KKHSSSTGGYYRCTR-YEVIQHVEEQSK-EMTVEAEKKHKRFQELDRFMHYYTRFKNHEH 680 690 700 710 720 730 600 610 620 630 640 650 FLJ001 AIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCGSPALA . :.. : : . ::: .... .:. : :: . . . : . : . ... :. : KIAA13 SYQLEQRL-LKTAKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTR-RILKCSYPYGF 740 750 760 770 780 790 660 670 FLJ001 KVLKGHCEKFGFRFFQENF KIAA13 FLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIKAACLVQQKRQEFLASV 800 810 820 830 840 850 >>KIAA0980 ( 1406 res) hj07083 (1406 aa) initn: 133 init1: 64 opt: 87 Z-score: 89.8 bits: 28.1 E(): 8.4 Smith-Waterman score: 87; 35.593% identity (66.102% similar) in 59 aa overlap (43-100:232-283) 20 30 40 50 60 70 FLJ001 PPLLAVCARQGASAGTEWGAGAGPHWASSPLGTGS-GSIDPDELRTVLQSCLRESAISLP ::.:: : .. .:: .: :: .. : KIAA09 WDSEDFGSPQKSCSPSFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQG---LE 210 220 230 240 250 80 90 100 110 120 130 FLJ001 DEKLDQLTLALFESADADGNGAITFEELRDELQRFPGVMENLTISAAHWLTAPAPRPRPR :.:..: :.. : ::.: ...::.. KIAA09 KEELEDL----FNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPE 260 270 280 290 300 310 >>KIAA0091 ( 1058 res) ha01032 (1058 aa) initn: 79 init1: 55 opt: 84 Z-score: 87.9 bits: 27.3 E(): 11 Smith-Waterman score: 84; 39.130% identity (60.870% similar) in 46 aa overlap (90-134:897-935) 60 70 80 90 100 110 FLJ001 QSCLRESAISLPDEKLDQLTLALFESADADGNGAITFEELR-DELQRFPGVMENLTISAA : :..: :... ..:.:. :.: : KIAA00 WLLDALLQYTSYGVTPPSLSHSGNRQRPPSGAGSVTPERMEGNHLHRYSKVLE------A 870 880 890 900 910 920 120 130 140 150 160 170 FLJ001 HWLTAPAPRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGLAASAHRDLGASVMV : : : ::: : :: KIAA00 H-LGDPKPRPLPACPRLSWAKPQPLNETAPSNLWKHQKLLSIDLDKVVLPNFRSNRPQVR 930 940 950 960 970 >>KIAA1878 ( 453 res) pj01649 (453 aa) initn: 98 init1: 56 opt: 80 Z-score: 87.6 bits: 26.0 E(): 11 Smith-Waterman score: 80; 25.989% identity (48.023% similar) in 177 aa overlap (23-184:102-270) 10 20 30 40 50 FLJ001 LAESWRWVNRRGPPLLAVCARQGASAGTEWGAGAGPHWASSPLGTGSGSIDP : .. : .:: : . ::.:: : KIAA18 APPSARAVAIETQPAQGELDAVARATGPAPGPTGEREPAAGPGRSGPGPGLGSGSTSGPA 80 90 100 110 120 130 60 70 80 90 100 FLJ001 DELRTVLQSCLRESAISLPDEKLDQLTLALFESADADGNGAITFE-ELRD-ELQR---FP : .:... : .. :. . . .. .:: . .. ..: : : : KIAA18 D---SVMRQDYRAWKVQRPEPSCRPRSE--YQPSDAPFERETQYQKDFRAWPLPRRGDHP 140 150 160 170 180 110 120 130 140 150 160 FLJ001 GVMENLTISAAHWLTAP---APRPRPRRPRQLTRAYWHNHRSQLFCLATYAGLHVLLFGL . . . :::: .:: ::. ::. .. . : : :. .: : : KIAA18 WIPKPVQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQE---AAPGGAGGLAAGK 190 200 210 220 230 240 170 180 190 200 210 FLJ001 AASA-HRDL----GASVMV--AKGCGQCLNFDCSFIAVLMLRRCLTWLRATWLAQVLPLD :..: .:: : . :: :.: :. KIAA18 ASGADERDTRRKAGPAWMVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQI 250 260 270 280 290 300 >>FLJ00377 ( 190 res) sh08074 (190 aa) initn: 76 init1: 76 opt: 76 Z-score: 87.3 bits: 24.7 E(): 12 Smith-Waterman score: 76; 37.143% identity (65.714% similar) in 35 aa overlap (478-512:44-78) 450 460 470 480 490 500 FLJ001 VTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFAS ::.: . . .:..:: :..:.. FLJ003 SPCVCFQCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVP 20 30 40 50 60 70 510 520 530 540 550 560 FLJ001 ILQSIMYRHQKRKHTCPSCQHSWIEGVQDNMKLHKVDFIWINRDQRSFEWFVSLLTKLEM ::::: FLJ003 ILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWS 80 90 100 110 120 130 >>KIAA0701 ( 1354 res) hg01611s1 (1354 aa) initn: 53 init1: 53 opt: 84 Z-score: 86.7 bits: 27.4 E(): 12 Smith-Waterman score: 84; 26.772% identity (55.118% similar) in 127 aa overlap (504-627:487-605) 480 490 500 510 520 530 FLJ001 CYIDGPYGTPTRRIFASEHAVLIGAGIGITPFASILQSIMYRHQKRKHTCPSCQHSWIEG : : .:: . . .: ::.:.:: .:. KIAA07 SDEHVDVRVDGLMLKFVIPSEVKSECHQDQPRAISIQSSEMIATNTRH-CPNCRHSDLEA 460 470 480 490 500 510 540 550 560 570 580 590 FLJ001 VQDNMKLHKVDFIWINRDQ--RSFEWFVSLLTKLEMDQAEEAQYGRFLELHM-YMTSALG . ...: ::. . . .: . : .:: . . .:.: : .. :.. .: :. KIAA07 LFQDFK--DCDFFSKTYTSFPKSCDNF-NLLHPIFQRHAHE-QDTKMHEIYKGNITPQLN 520 530 540 550 560 570 600 610 620 630 640 650 FLJ001 KNDMKAIGLQMALDLLANKEKKDSITGLQTRTQPGRPDWSKVFQKVAAEKKGKVQVFFCG :: .:. . : :. : .. : .. ::: KIAA07 KNTLKT---SAATDVWAVYFSQFWIDYEGMKSGKGRPISFVDSFPLSIWICQPTRYAESQ 580 590 600 610 620 660 670 FLJ001 SPALAKVLKGHCEKFGFRFFQENF KIAA07 KEPQTCNQVSLNTSQSESSDLAGRLKRKKLLKEYYSTESEPLTNGGQKPSSSDTFFRFSP 630 640 650 660 670 680 674 residues in 1 query sequences 2210320 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:41:26 2009 done: Fri Feb 27 10:41:27 2009 Total Scan time: 0.660 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]