# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04143.fasta.huge -Q ../query/FLJ00299.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00299, 72 aa vs ./tmplib.10216 library 2210922 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.7396+/-0.00396; mu= 15.3516+/- 0.268 mean_var=84.9146+/-18.223, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.139182 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00291 ( 159 res) sh02993 ( 159) 95 26.5 0.3 KIAA1149 ( 532 res) fg04087 ( 532) 91 26.5 0.97 KIAA0913 ( 1881 res) fh07519s2 (1881) 86 26.4 3.7 KIAA0641 ( 1326 res) hj03494s1 (1326) 81 25.2 6.3 KIAA1440 ( 1377 res) hg02441b (1377) 80 25.0 7.3 KIAA0282 ( 711 res) ha06845s1 ( 711) 75 23.5 10 KIAA0589 ( 687 res) hj02695 ( 687) 74 23.3 12 KIAA1391 ( 1194 res) hh12985 (1194) 76 24.1 12 KIAA0732 ( 1449 res) fg05988b (1449) 76 24.2 13 KIAA0029 ( 974 res) ha00566 ( 974) 73 23.3 16 FLJ00108 ( 216 res) as00108 ( 216) 66 20.9 20 FLJ00121 ( 448 res) sh00381 ( 448) 68 21.8 22 KIAA0350 ( 1062 res) hg01945 (1062) 71 23.0 22 KIAA1886 ( 655 res) fk01837 ( 655) 69 22.3 23 KIAA0058 ( 181 res) ha01532 ( 181) 64 20.4 24 KIAA1205 ( 1217 res) fg03511a (1217) 71 23.1 24 KIAA0227 ( 336 res) ha02748 ( 336) 66 21.2 25 KIAA0310 ( 2388 res) ee03470 (2388) 73 24.0 26 FLJ00043 ( 1415 res) as00043 (1415) 71 23.2 26 KIAA0571 ( 683 res) hh02388 ( 683) 68 22.1 27 FLJ00315 ( 925 res) sh06842 ( 925) 69 22.5 27 FLJ00066 ( 162 res) as00066 ( 162) 62 19.9 29 KIAA0711 ( 661 res) hg00358 ( 661) 67 21.9 30 KIAA1445 ( 1202 res) fg03469b (1202) 69 22.7 31 KIAA1184 ( 380 res) hg01696a ( 380) 64 20.9 35 KIAA0104 ( 291 res) ha00685 ( 291) 63 20.5 35 KIAA0343 ( 1187 res) hg01457 (1187) 68 22.5 36 KIAA2038 ( 917 res) pj01991 ( 917) 67 22.1 36 KIAA1031 ( 940 res) fh00470 ( 940) 67 22.1 36 KIAA0945 ( 797 res) hj04760 ( 797) 66 21.8 38 KIAA1858 ( 2469 res) ae00147 (2469) 70 23.4 40 FLJ00198 ( 677 res) sj03504 ( 677) 65 21.5 41 KIAA0422 ( 1160 res) hh01205s1 (1160) 67 22.3 41 KIAA0840 ( 523 res) hk04921s1 ( 523) 64 21.1 41 KIAA0897 ( 419 res) hk09524 ( 419) 63 20.7 42 KIAA0901 ( 1233 res) hk09716 (1233) 67 22.3 42 KIAA1234 ( 727 res) fh08618 ( 727) 65 21.5 42 KIAA0848 ( 988 res) hk05607 ( 988) 66 21.9 43 FLJ00096 ( 208 res) as00096 ( 208) 60 19.7 44 KIAA0672 ( 824 res) hk02382 ( 824) 65 21.6 45 KIAA0599 ( 697 res) hj03137 ( 697) 64 21.3 47 KIAA1002 ( 962 res) hk09859 ( 962) 65 21.7 49 KIAA0665 ( 760 res) hk02064 ( 760) 64 21.4 49 FLJ00242 ( 804 res) sj07550 ( 804) 64 21.4 51 KIAA0079 ( 1102 res) ha03543 (1102) 65 21.8 52 KIAA1845 ( 705 res) fg05317(revised) ( 705) 63 21.1 55 KIAA0918 ( 966 res) hk09360(revised) ( 966) 64 21.5 56 KIAA1974 ( 362 res) ah03502 ( 362) 60 20.0 59 FLJ00361 ( 366 res) sh04352 ( 366) 60 20.1 59 KIAA1236 ( 1840 res) pg00641 (1840) 66 22.4 59 >>FLJ00291 ( 159 res) sh02993 (159 aa) initn: 79 init1: 79 opt: 95 Z-score: 115.9 bits: 26.5 E(): 0.3 Smith-Waterman score: 95; 33.929% identity (53.571% similar) in 56 aa overlap (1-53:53-107) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGA : :. ::: : . ..:. .. .: FLJ002 AELESGGVLTSPPKPNQNFLLGVAIRGPSAGAAGVEGQGQALLTWQEAAKETEGRAPR-P 30 40 50 60 70 80 40 50 60 70 FLJ002 LEPG---PYCPGHLLYLAHSYLPCSPESCLLCPAQAETAVLVHSP .. : : ::: : : : . :: : FLJ002 VQGGNLVPTAPGHTLSLRHPHGPCHPAVERTACLEVTFRALLHREDCELIQFTASGAAGG 90 100 110 120 130 140 >>KIAA1149 ( 532 res) fg04087 (532 aa) initn: 44 init1: 44 opt: 91 Z-score: 106.6 bits: 26.5 E(): 0.97 Smith-Waterman score: 91; 32.812% identity (45.312% similar) in 64 aa overlap (2-63:1-63) 10 20 30 40 50 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPY-CPGHLLYLAHSY-LPCSPESCLL ::. : : :.: . : . .: : : : ::: :. :: .: . KIAA11 EATSTTQTW-GQAPGTDVGQCEPRGPEGRGPPWPKPCPGSCCGWARECCLPTAPSTASG 10 20 30 40 50 60 70 FLJ002 CPAQAETAVLVHSP :: : KIAA11 CPCAAAWGGAPLGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQT 60 70 80 90 100 110 >>KIAA0913 ( 1881 res) fh07519s2 (1881 aa) initn: 67 init1: 45 opt: 86 Z-score: 96.1 bits: 26.4 E(): 3.7 Smith-Waterman score: 86; 33.824% identity (54.412% similar) in 68 aa overlap (11-72:1523-1588) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGP----- :. :.. :.:. : ...: ::: KIAA09 CSASGIRAGGEAGRGMPEGRGGPGTEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHG 1500 1510 1520 1530 1540 1550 40 50 60 70 FLJ002 YCPGHLLYLA-HSYLPCSPESCLLCPAQAETAVLVHSP . :: : : . .:::::. : ::. . : : KIAA09 HSPGLHPYTALQPHLPCSPQY-LTHPAHPAHP-MPHMPRPAVFPVPSSAYPQGVHPAFLG 1560 1570 1580 1590 1600 1610 KIAA09 AQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVALSSVHPASTFPAIQG 1620 1630 1640 1650 1660 1670 >>KIAA0641 ( 1326 res) hj03494s1 (1326 aa) initn: 78 init1: 53 opt: 81 Z-score: 92.1 bits: 25.2 E(): 6.3 Smith-Waterman score: 81; 46.154% identity (61.538% similar) in 39 aa overlap (28-66:686-721) 10 20 30 40 50 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPYCPGHLLYLAHSYLPCSPESCL :.: ::: ::: : .: : .: :: KIAA06 HAEGCPSPKQTPRASPEPGYPGEPLLGLQAASAQEPG-CCPG-LPHLC-SAQGLAPAPCL 660 670 680 690 700 710 60 70 FLJ002 LCPAQAETAVLVHSP . :. .::: KIAA06 VTPSWTETASSGGDHPQAEPKLATEAEGTTGPRLPLPSVPSPSQEGAPLPSEEASAPDAP 720 730 740 750 760 770 >>KIAA1440 ( 1377 res) hg02441b (1377 aa) initn: 64 init1: 40 opt: 80 Z-score: 90.8 bits: 25.0 E(): 7.3 Smith-Waterman score: 80; 37.736% identity (60.377% similar) in 53 aa overlap (20-70:1297-1347) 10 20 30 40 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPG-PYCPGHLLY-LAHS . :.: : :.:. : :: : . .... KIAA14 ILSFFSTNLQRLMSSAEECCRNLAFSLALRSMQNSPSIAAAFLPTFMYCLGSQDFEVVQT 1270 1280 1290 1300 1310 1320 50 60 70 FLJ002 YLPCSPESCLLCPAQAETAVLVHSP : :: ::: : ..:::.: KIAA14 ALRNLPEYALLC--QEHAAVLLHRAFLVGMYGQMDPSAQISEALRILHMEAVM 1330 1340 1350 1360 1370 >>KIAA0282 ( 711 res) ha06845s1 (711 aa) initn: 70 init1: 70 opt: 75 Z-score: 88.1 bits: 23.5 E(): 10 Smith-Waterman score: 75; 25.424% identity (50.847% similar) in 59 aa overlap (10-68:128-184) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPYCPG ..: :.. .. : : : :. : : KIAA02 RAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKS--PNGVRVFPPAMPP 100 110 120 130 140 150 40 50 60 70 FLJ002 HLLYLAHSYLPCSPESCLLCPAQAETAVLVHSP .:. . : .::. :: .. .: KIAA02 PATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKC 160 170 180 190 200 210 >>KIAA0589 ( 687 res) hj02695 (687 aa) initn: 78 init1: 48 opt: 74 Z-score: 87.1 bits: 23.3 E(): 12 Smith-Waterman score: 74; 34.000% identity (58.000% similar) in 50 aa overlap (10-55:42-88) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGAL----EPGP ::... . : :: .:.:. .: .:: KIAA05 PRRRPRAAMELEVPDEAESAEAGAVPSEAAWAAESGAAAGLAQKKAAPTEVLSMTAQPG- 20 30 40 50 60 70 40 50 60 70 FLJ002 YCPGHLLYLAHSYLPCSPESCLLCPAQAETAVLVHSP ::: :.: . : :. KIAA05 --PGHGKKLGHRGVDASGETTYKKTTSSTLKGAIQLGIGYTVGHLSSKPERDVLMQDFYV 80 90 100 110 120 >>KIAA1391 ( 1194 res) hh12985 (1194 aa) initn: 86 init1: 63 opt: 76 Z-score: 87.1 bits: 24.1 E(): 12 Smith-Waterman score: 76; 35.294% identity (61.765% similar) in 34 aa overlap (8-39:1049-1082) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTAQDS--ASPAGALEPGP ..:. : ..:. .. ::: : ::: : KIAA13 TKKDTMEWHSQMHSVTLHPSTWLRNGVASLKNWSLKKKAKAARPEEEKIASPKGPLEPPP 1020 1030 1040 1050 1060 1070 40 50 60 70 FLJ002 YCPGHLLYLAHSYLPCSPESCLLCPAQAETAVLVHSP . : KIAA13 HASGVPEANSLQEEQKDLPLRAAEGLSPVQSAQRCSSSPFQDSERHCSSPFSLVESRLKL 1080 1090 1100 1110 1120 1130 >>KIAA0732 ( 1449 res) fg05988b (1449 aa) initn: 53 init1: 53 opt: 76 Z-score: 86.3 bits: 24.2 E(): 13 Smith-Waterman score: 76; 29.310% identity (60.345% similar) in 58 aa overlap (12-64:545-600) 10 20 30 FLJ002 GEAACEGQDWAGKATSHAVTA----QDSASPAGALEPGPYC : :... :. : ..:.... :::: KIAA07 PTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVGPTNGVYPGPYY 520 530 540 550 560 570 40 50 60 70 FLJ002 PGHLLYLAHSYLPCSP-ESCLLCPAQAETAVLVHSP ::. . .:. ::: . . : ..: KIAA07 PGYPTP-SGQYV-CSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVADNQELQLSNLLSRD 580 590 600 610 620 630 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 52 init1: 52 opt: 73 Z-score: 84.6 bits: 23.3 E(): 16 Smith-Waterman score: 73; 28.000% identity (50.000% similar) in 50 aa overlap (13-62:678-725) 10 20 30 40 FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPYCPGHLL ..:: . : .. : : : :: . KIAA00 YSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCTAGPPPP--PGGGM 650 660 670 680 690 700 50 60 70 FLJ002 YLAHSYLPCSPESCLLCPAQAETAVLVHSP . . .: .:.:: : : KIAA00 VMMQLSVPNNPQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPA 710 720 730 740 750 760 72 residues in 1 query sequences 2210922 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:17 2009 done: Fri Feb 27 10:51:18 2009 Total Scan time: 0.270 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]