# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh04143.fasta.nr -Q ../query/FLJ00299.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00299, 72 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7827311 sequences
  Expectation_n fit: rho(ln(x))= 4.5951+/-0.00018; mu= 5.8218+/- 0.010
 mean_var=59.5235+/-11.479, 0's: 65 Z-trim: 66  B-trim: 7 in 1/64
 Lambda= 0.166238

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|21748504|dbj|BAC03389.1| FLJ00299 protein [Homo (  72)  515 130.6   2e-29


>>gi|21748504|dbj|BAC03389.1| FLJ00299 protein [Homo sap  (72 aa)
 initn: 515 init1: 515 opt: 515  Z-score: 684.5  bits: 130.6 E(): 2e-29
Smith-Waterman score: 515;  100.000% identity (100.000% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
FLJ002 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPYCPGHLLYLAHSYLPCSPESCLLCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 GEAACEGQDWAGKATSHAVTAQDSASPAGALEPGPYCPGHLLYLAHSYLPCSPESCLLCP
               10        20        30        40        50        60

               70  
FLJ002 AQAETAVLVHSP
       ::::::::::::
gi|217 AQAETAVLVHSP
               70  




72 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 12:46:09 2009 done: Fri Feb 27 12:49:47 2009
 Total Scan time: 454.380 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]