# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04326.fasta.huge -Q ../query/FLJ00360.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00360, 137 aa vs ./tmplib.10216 library 2210857 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.4779+/-0.00351; mu= 18.1009+/- 0.237 mean_var=71.1686+/-15.048, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.152030 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0698 ( 1104 res) hg00360s1 (1104) 111 33.1 0.041 KIAA0386 ( 1085 res) hj00015 (1085) 93 29.1 0.63 KIAA1962 ( 746 res) hm00158 ( 746) 83 26.7 2.4 KIAA1389 ( 1514 res) hh03860 (1514) 85 27.6 2.5 KIAA0458 ( 1552 res) ef01252 (1552) 82 26.9 4.1 FLJ00418 ( 200 res) sj09371 ( 200) 74 23.8 4.6 KIAA1845 ( 705 res) fg05317(revised) ( 705) 78 25.5 4.9 KIAA1157 ( 428 res) hh05862 ( 428) 76 24.7 5.1 FLJ00321 ( 245 res) sh07670 ( 245) 73 23.7 6 FLJ00330 ( 246 res) sj03258 ( 246) 73 23.7 6 KIAA1022 ( 1131 res) fg00613 (1131) 77 25.6 7.3 KIAA1447 ( 1721 res) fh04686 (1721) 78 26.1 7.9 FLJ00053 ( 443 res) as00053 ( 443) 73 24.1 8.2 FLJ00283 ( 500 res) sh02088 ( 500) 73 24.2 8.8 KIAA0356 ( 1058 res) hh00006s1 (1058) 75 25.1 9.6 FLJ00341 ( 2760 res) sf00005 (2760) 78 26.5 10 FLJ00384 ( 118 res) sj03287 ( 118) 66 21.7 12 FLJ00288 ( 217 res) sh02579 ( 217) 67 22.3 14 KIAA0837 ( 745 res) hj06536 ( 745) 70 23.8 17 KIAA0231 ( 823 res) fk16230 ( 823) 70 23.9 18 FLJ00104 ( 287 res) as00104 ( 287) 66 22.3 19 KIAA0994 ( 686 res) hk07627 ( 686) 69 23.5 19 KIAA1926 ( 412 res) hh10052 ( 412) 67 22.7 20 KIAA1027 ( 2550 res) fh00156s1 (2550) 73 25.3 21 KIAA1685 ( 1505 res) pf04287 (1505) 71 24.5 21 FLJ00084 ( 641 res) as00084 ( 641) 68 23.3 21 KIAA1616 ( 1017 res) fj13825 (1017) 69 23.8 23 KIAA1457 ( 1359 res) fh16161s1 (1359) 70 24.2 23 FLJ00068 ( 1194 res) as00068 (1194) 69 23.9 25 FLJ00400 ( 782 res) sj07486 ( 782) 67 23.2 27 FLJ00408 ( 597 res) sj08719 ( 597) 66 22.8 28 KIAA1746 ( 1098 res) pj01729 (1098) 68 23.6 28 FLJ00106 ( 379 res) as00106 ( 379) 64 22.0 30 KIAA0905 ( 1229 res) hk10341 (1229) 68 23.7 30 KIAA0127 ( 315 res) ha03921 ( 315) 63 21.7 31 KIAA0992 ( 772 res) hk07554 ( 772) 66 23.0 32 FLJ00023 ( 192 res) as00023 ( 192) 61 20.9 32 FLJ00077 ( 278 res) as00077 ( 278) 62 21.4 34 FLJ00259 ( 659 res) sh04102 ( 659) 65 22.6 34 KIAA1316 ( 1590 res) fh12964 (1590) 68 23.9 34 KIAA0120 ( 219 res) ha01756 ( 219) 61 21.0 35 FLJ00393 ( 547 res) sj05490 ( 547) 64 22.3 36 KIAA0469 ( 559 res) hg01666 ( 559) 64 22.3 36 KIAA1153 ( 424 res) hh01454 ( 424) 63 21.9 36 KIAA1832 ( 694 res) fg02852(revised) ( 694) 64 22.4 41 KIAA0201 ( 949 res) ha03256 ( 949) 65 22.9 41 KIAA1808 ( 539 res) fk00917 ( 539) 63 22.1 41 KIAA0163 ( 550 res) ha01059 ( 550) 63 22.1 42 KIAA1679 ( 1536 res) fh22954 (1536) 66 23.4 45 FLJ00398 ( 660 res) sj06617 ( 660) 63 22.2 46 >>KIAA0698 ( 1104 res) hg00360s1 (1104 aa) initn: 74 init1: 48 opt: 111 Z-score: 131.2 bits: 33.1 E(): 0.041 Smith-Waterman score: 111; 37.313% identity (64.179% similar) in 67 aa overlap (58-121:612-674) 30 40 50 60 70 80 FLJ003 HSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLD--GT .::: : : . .:.:. . :..: : :: KIAA06 MCKGDTVAWHLLGLGTETDVHGVMFQGNTVQLQGMRKGAAMLFPHTF-VMAIMQPDNLGT 590 600 610 620 630 640 90 100 110 120 130 FLJ003 PRV-CRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVFSWKSTKK .. :.:.: : :: :.. . .:::. : : .: KIAA06 FEIYCQAGSHREAGM---RAIYNVSQCPGHQATPRQRYQAARIYYIMAEEVEWDYCPDRS 650 660 670 680 690 KIAA06 WEREWHNQSEKDSYGYIFLSNKDGLLGSRYKKAVFREYTDGTFRIPRPRTGPEEHLGILG 700 710 720 730 740 750 >>KIAA0386 ( 1085 res) hj00015 (1085 aa) initn: 74 init1: 74 opt: 93 Z-score: 110.0 bits: 29.1 E(): 0.63 Smith-Waterman score: 93; 30.588% identity (60.000% similar) in 85 aa overlap (27-108:910-994) 10 20 30 40 50 FLJ003 SSRWVWDLFLCGYWQQPSKLAAVLPNSHS-GDLGPPLSCLL--VTLIEELHCAGQA ::. .:: :: : :.... :. . KIAA03 SQILDQAEPLLSSSLSSEVVTVFQYYSYFTSHGVSDLESYLSQLARQVSMVQTLQSLRDE 880 890 900 910 920 930 60 70 80 90 100 110 FLJ003 KVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPG :... .. ..: ..::. ::: .: .:.. ::.: .:. :::: KIAA03 KLLQTMSDLAPSNLLAQQEVLRTLALLLTREDNEVSEAVTLYLAAASKNQHFREKALLYY 940 950 960 970 980 990 120 130 FLJ003 QVADPGHRCVGIGKLVFSWKSTKK KIAA03 CEALTKTNLQLQKAACLALKILEATESIKMLVTLCQSDTEEIRNVASETLLSLGEDGRLA 1000 1010 1020 1030 1040 1050 >>KIAA1962 ( 746 res) hm00158 (746 aa) initn: 39 init1: 39 opt: 83 Z-score: 99.7 bits: 26.7 E(): 2.4 Smith-Waterman score: 83; 30.667% identity (56.000% similar) in 75 aa overlap (63-132:11-82) 40 50 60 70 80 90 FLJ003 GPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAA .. ..: :::: : . . .::: .. KIAA19 DTMQAVVPLNKMTAISPEPQTL---ASTEQNEVPRVVTSG 10 20 30 100 110 120 130 FLJ003 S--ARLAG-AVRNRSFREKVR--CPGQVADPGHRCVGIGKLVFSWKSTKK : : : :. .:::.. : : ..:: : . . .: .: KIAA19 EQEAILRGNAADAESFRQRFRWFCYSEVAGPRKALSQLWELCNQWLRPDIHTKEQILELL 40 50 60 70 80 90 KIAA19 VFEQFLTILPGEIRIWVKSQHPESSEEVVTLIEDLTQMLEEKDPVSQDSTVSQEENSKED 100 110 120 130 140 150 >>KIAA1389 ( 1514 res) hh03860 (1514 aa) initn: 74 init1: 74 opt: 85 Z-score: 99.1 bits: 27.6 E(): 2.5 Smith-Waterman score: 85; 29.091% identity (61.818% similar) in 55 aa overlap (84-136:1142-1196) 60 70 80 90 100 110 FLJ003 KVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRV-CRAASARL-AGAVRNRSFREKVRC :.: . : .:. : .. : : . KIAA13 ASAISAGSAAEGSMGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDSSKVYIVSHSSGQQV 1120 1130 1140 1150 1160 1170 120 130 FLJ003 PGQVADPGHRCVGIGKLVFSWKSTKK ::... : :: ...: :..::... KIAA13 PGSMSKPYHRQGAVNKYVIGWKKSEGSPPPEEPEVTECPGMYSEMDVMSTATQHQTVVGD 1180 1190 1200 1210 1220 1230 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 102 init1: 78 opt: 82 Z-score: 95.5 bits: 26.9 E(): 4.1 Smith-Waterman score: 82; 30.556% identity (50.000% similar) in 72 aa overlap (16-87:793-856) 10 20 30 40 FLJ003 SSRWVWDLFLCGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIE .:.. . : : . :::. : . KIAA04 GSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSP-HPPLQPLTGS--- 770 780 790 800 810 50 60 70 80 90 100 FLJ003 ELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSF ::: .. . : :: : :..:.: ::: : :. KIAA04 ----AGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTS 820 830 840 850 860 870 110 120 130 FLJ003 REKVRCPGQVADPGHRCVGIGKLVFSWKSTKK KIAA04 PAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP 880 890 900 910 920 930 >>FLJ00418 ( 200 res) sj09371 (200 aa) initn: 36 init1: 36 opt: 74 Z-score: 94.4 bits: 23.8 E(): 4.6 Smith-Waterman score: 74; 34.694% identity (55.102% similar) in 49 aa overlap (87-132:131-176) 60 70 80 90 100 110 FLJ003 RKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRC---PG :: :: . : :::.: ....: :. FLJ004 DQSCREGVAGQGDHWPYHLWPGGPSLWLRLRVSRAIRGSL---VRNHSQGQSMECDCGPS 110 120 130 140 150 120 130 FLJ003 QVADPGHRCVGIGKLVFSWKSTKK :: :: .:. .: FLJ004 VPPGPGVRCGCVGSDCRKWPGGLSLGDRCCVHAPLAEPRPFVQ 160 170 180 190 200 >>KIAA1845 ( 705 res) fg05317(revised) (705 aa) initn: 43 init1: 43 opt: 78 Z-score: 94.0 bits: 25.5 E(): 4.9 Smith-Waterman score: 78; 37.255% identity (54.902% similar) in 51 aa overlap (77-125:547-592) 50 60 70 80 90 100 FLJ003 LHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFR :. .:: :. :: .. ::. :: . KIAA18 RVFSTGRVSLSAIRAVAKNTTPGAALPAGEWGTVQLRGSWRV-----GQTAGGSRNFASY 520 530 540 550 560 570 110 120 130 FLJ003 EKVRC-PGQVAD-PGHRCVGIGKLVFSWKSTKK : : .: . :: ::: : KIAA18 PTNPCFPFSVPEGPGPRCVRITLHQHCRPSDTEFHPIGFHIFQVPEGGRSQDAPPLLLQE 580 590 600 610 620 630 >>KIAA1157 ( 428 res) hh05862 (428 aa) initn: 47 init1: 47 opt: 76 Z-score: 93.7 bits: 24.7 E(): 5.1 Smith-Waterman score: 80; 29.412% identity (48.529% similar) in 136 aa overlap (18-133:33-164) 10 20 30 40 FLJ003 SSRWVWDLFLCGYWQQPSKLAAVLPNSHSGDL-----GPPLSCLLVT :: . :::... .: . .:: . KIAA11 STHNEDQASCEVLTVKKKAGAVTSTPNRNSSKRRSSLPNGEGLQLKENSESEGVSCHYWS 10 20 30 40 50 60 50 60 70 80 90 FLJ003 LIEELHCAGQAKVV--RKLQGKRLGQLQPLPQTLRAWALLQ---LDGTPRVCRAASARLA :.. : .. : :: : :: . ::: . . :. :.: : :. : : :. KIAA11 LFDG-HAGSGAAVVASRLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLT 70 80 90 100 110 120 100 110 120 130 FLJ003 GAVRNRSFREKVRCPGQVADPG----------HRCVGIGKLVFSWKSTKK : :.: : ::. . : :.:. :: : ..: KIAA11 ---RAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSSYN 130 140 150 160 170 KIAA11 ISGGCTALIVICLLGKLYVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPH 180 190 200 210 220 230 >>FLJ00321 ( 245 res) sh07670 (245 aa) initn: 48 init1: 48 opt: 73 Z-score: 92.4 bits: 23.7 E(): 6 Smith-Waterman score: 75; 30.108% identity (46.237% similar) in 93 aa overlap (49-126:127-213) 20 30 40 50 60 70 FLJ003 KLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWA ::: . : : .: .:::::: : FLJ003 ELFLAWPPGLLDGTADDATTVDTLLASKSSCAGL--LCRTLA--HLEELQPLPQRPSPWP 100 110 120 130 140 150 80 90 100 110 120 FLJ003 LLQLDGTP----RVCRAASA-----------RLAGAVRNRSFREKVRCPGQVADPGHRCV .: :. :.: ...: ::: :: . : . : ... .:: FLJ003 QASLLGATVTVLRLCDGSAAPASSVGGHLCGTLAGCVRVQ--RAALDFLGTLSQGTGECV 160 170 180 190 200 210 130 FLJ003 GIGKLVFSWKSTKK : FLJ003 LYGFGVGLSLCPHSPFCSEAPGNCCPSLFLLWGGG 220 230 240 >>FLJ00330 ( 246 res) sj03258 (246 aa) initn: 76 init1: 54 opt: 73 Z-score: 92.4 bits: 23.7 E(): 6 Smith-Waterman score: 73; 31.818% identity (52.273% similar) in 44 aa overlap (64-107:127-170) 40 50 60 70 80 90 FLJ003 PPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAAS : :. :: .. :. :. ::: . FLJ003 SVGPRPRPRGRSHPALAFAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPR 100 110 120 130 140 150 100 110 120 130 FLJ003 ARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVFSWKSTKK : : : . : .:. FLJ003 ALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILA 160 170 180 190 200 210 137 residues in 1 query sequences 2210857 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:01:51 2009 done: Fri Feb 27 11:01:51 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]